RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PSMG4Q5JS54 123 aa1.44□□□□□ -2.18
VPS13A-212ENST00000493341 PSENENQ9NZ42 101 aa1.44□□□□□ -2.18
VPS13A-212ENST00000493341 TRBV7-3A0A075B6L6 115 aa1.43□□□□□ -2.18
VPS13A-212ENST00000493341 MGST2Q99735 147 aa1.43□□□□□ -2.18
VPS13A-212ENST00000493341 NMES1Q9C002 83 aa1.43□□□□□ -2.18
VPS13A-212ENST00000493341 DNAH2Q9P225 4427 aa1.43□□□□□ -2.18
VPS13A-212ENST00000493341 C7orf77A4D0Y5 90 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 SPART-AS1P0CW21 52 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 SPAG11BQ08648 103 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 WFDC2Q14508 124 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 BVES-AS1Q5T3Y7 98 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 KRTAP5-7Q6L8G8 165 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 SPAG11AQ6PDA7 123 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 LENEPQ9Y5L5 61 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 EPPK1P58107 5090 aaKnown RBP1.42□□□□□ -2.18
VPS13A-212ENST00000493341 PKD1P98161 4303 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 DEFB131BA0A096LNP1 70 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 H3BNG1 76 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 C10orf113Q5VZT2 155 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 FAM213BQ8TBF2 198 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 FAM167A-AS1Q96KT0 104 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 FAT2Q9NYQ8 4349 aa1.42□□□□□ -2.18
VPS13A-212ENST00000493341 AHNAK2Q8IVF2 5795 aa1.41□□□□□ -2.18
VPS13A-212ENST00000493341 hADV29S1A0JD25 119 aa1.41□□□□□ -2.18
VPS13A-212ENST00000493341 DEFB4AO15263 64 aa1.41□□□□□ -2.18
VPS13A-212ENST00000493341 DEFB1P60022 68 aa1.41□□□□□ -2.18
VPS13A-212ENST00000493341 ETDBQ3ZM63 59 aa1.41□□□□□ -2.18
VPS13A-212ENST00000493341 TMEM263Q8WUH6 116 aaKnown RBP1.41□□□□□ -2.18
VPS13A-212ENST00000493341 ST20Q9HBF5 79 aa1.41□□□□□ -2.18
VPS13A-212ENST00000493341 SPCS1Q9Y6A9 102 aa1.41□□□□□ -2.18
VPS13A-212ENST00000493341 DYNC1H1Q14204 4646 aaKnown RBP1.41□□□□□ -2.18
VPS13A-212ENST00000493341 HERC2O95714 4834 aa1.41□□□□□ -2.18
VPS13A-212ENST00000493341 VPS13BQ7Z7G8 4022 aa1.41□□□□□ -2.18
VPS13A-212ENST00000493341 H3BUT2 72 aa1.4□□□□□ -2.18
VPS13A-212ENST00000493341 CCL18P55774 89 aa1.4□□□□□ -2.18
VPS13A-212ENST00000493341 PMCHL2Q9BQD1 86 aa1.4□□□□□ -2.18
VPS13A-212ENST00000493341 TIMM8BQ9Y5J9 83 aaPredicted RBP1.4□□□□□ -2.18
VPS13A-212ENST00000493341 DNAH11Q96DT5 4516 aa1.4□□□□□ -2.19
VPS13A-212ENST00000493341 SPINK4O60575 86 aa1.4□□□□□ -2.19
VPS13A-212ENST00000493341 SFTA3P0C7M3 94 aa1.4□□□□□ -2.19
VPS13A-212ENST00000493341 ADIRFQ15847 76 aa1.4□□□□□ -2.19
VPS13A-212ENST00000493341 SMIM11BQ8TCY0 68 aa1.4□□□□□ -2.19
VPS13A-212ENST00000493341 MANBALQ9NQG1 85 aa1.39□□□□□ -2.19
VPS13A-212ENST00000493341 PKHD1P08F94 4074 aa1.39□□□□□ -2.19
VPS13A-212ENST00000493341 TRBV6-1A0A0K0K1D8 114 aa1.39□□□□□ -2.19
VPS13A-212ENST00000493341 CHKB-CPT1BH3BT56 60 aa1.39□□□□□ -2.19
VPS13A-212ENST00000493341 M0R3E3 92 aa1.39□□□□□ -2.19
VPS13A-212ENST00000493341 SEC11AP67812 179 aa1.39□□□□□ -2.19
VPS13A-212ENST00000493341 SERF2P84101 59 aa1.39□□□□□ -2.19
VPS13A-212ENST00000493341 BAGE3Q86Y29 109 aa1.39□□□□□ -2.19
VPS13A-212ENST00000493341 NOP10Q9NPE3 64 aaKnown RBP1.39□□□□□ -2.19
VPS13A-212ENST00000493341 ARL2-SNX15V9GYD0 113 aa1.39□□□□□ -2.19
VPS13A-212ENST00000493341 RYR1P21817 5038 aa1.38□□□□□ -2.19
VPS13A-212ENST00000493341 SYS1-DBNDD2H3BUS1 97 aa1.38□□□□□ -2.19
VPS13A-212ENST00000493341 UBE2DNLQ8IWF7 75 aa1.38□□□□□ -2.19
VPS13A-212ENST00000493341 HIGD1BQ9P298 99 aa1.38□□□□□ -2.19
VPS13A-212ENST00000493341 A0A096LPF7 62 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 TRAV21A0A0B4J279 112 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 TRBV7-7A0A0K0K1E9 115 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 CTXND1A0A1B0GTU2 59 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 DEFB130BP0DP73 79 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 DEFB130AP0DP74 79 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 HTN3P15516 51 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 GCHFRP30047 84 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 ASIPP42127 132 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 C18orf32Q8TCD1 76 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 TMEM167BQ9NRX6 74 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 PRO0255Q9UI72 69 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 PKHD1L1Q86WI1 4243 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 HSPG2P98160 4391 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 DNAH8Q96JB1 4490 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 A0A087WWC5 75 aa1.37□□□□□ -2.19
VPS13A-212ENST00000493341 DNAH5Q8TE73 4624 aa1.36□□□□□ -2.19
VPS13A-212ENST00000493341 APOBP04114 4563 aaKnown RBP1.36□□□□□ -2.19
VPS13A-212ENST00000493341 GVQW2A0A096LPI5 108 aaPredicted RBP1.36□□□□□ -2.19
VPS13A-212ENST00000493341 UMAD1C9J7I0 102 aa1.36□□□□□ -2.19
VPS13A-212ENST00000493341 LINC01556Q5JQF7 62 aa1.36□□□□□ -2.19
VPS13A-212ENST00000493341 CFAP126Q5VTH2 177 aa1.36□□□□□ -2.19
VPS13A-212ENST00000493341 LRP1BQ9NZR2 4599 aa1.36□□□□□ -2.19
VPS13A-212ENST00000493341 KIAA1109Q2LD37 5005 aa1.35□□□□□ -2.19
VPS13A-212ENST00000493341 FXYD6-FXYD2A0A087WZ82 144 aa1.35□□□□□ -2.19
VPS13A-212ENST00000493341 HTN1P15515 57 aa1.35□□□□□ -2.19
VPS13A-212ENST00000493341 KRTDAPP60985 99 aa1.35□□□□□ -2.19
VPS13A-212ENST00000493341 LELP1Q5T871 98 aa1.35□□□□□ -2.19
VPS13A-212ENST00000493341 CRIP1P50238 77 aa1.35□□□□□ -2.19
VPS13A-212ENST00000493341 Q6ZRX8 168 aa1.35□□□□□ -2.19
VPS13A-212ENST00000493341 PCLOQ9Y6V0 5065 aa1.34□□□□□ -2.19
VPS13A-212ENST00000493341 Q5VV11 94 aa1.34□□□□□ -2.19
VPS13A-212ENST00000493341 SFTA2Q6UW10 78 aa1.34□□□□□ -2.19
VPS13A-212ENST00000493341 WFDC10BQ8IUB3 73 aa1.34□□□□□ -2.19
VPS13A-212ENST00000493341 PRR15LQ9BU68 103 aa1.34□□□□□ -2.19
VPS13A-212ENST00000493341 NXT2Q9NPJ8 142 aaKnown RBP1.34□□□□□ -2.19
VPS13A-212ENST00000493341 KANTRA0A1W2PQU2 76 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 F8VRH5 84 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 ATOX1O00244 68 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 UBE2D3P61077 147 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 UBE2D2P62837 147 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 PMCHL1Q16048 86 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 SERP2Q8N6R1 65 aa1.33□□□□□ -2.2
VPS13A-212ENST00000493341 CNFNQ9BYD5 112 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 134 ms