RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 PRUNE2Q8WUY3 3088 aa1.45□□□□□ -2.18
BRCA1-220ENST00000492859 C5orf42Q9H799 3197 aa1.45□□□□□ -2.18
BRCA1-220ENST00000492859 KRTAP10-4P60372 401 aaPredicted RBP1.45□□□□□ -2.18
BRCA1-220ENST00000492859 FRYLO94915 3013 aa1.45□□□□□ -2.18
BRCA1-220ENST00000492859 BDP1A6H8Y1 2624 aa1.44□□□□□ -2.18
BRCA1-220ENST00000492859 ZFHX4Q86UP3 3567 aa1.43□□□□□ -2.18
BRCA1-220ENST00000492859 USP9YO00507 2555 aaPredicted RBP1.42□□□□□ -2.18
BRCA1-220ENST00000492859 RELNP78509 3460 aa1.42□□□□□ -2.18
BRCA1-220ENST00000492859 CSMD3Q7Z407 3707 aa1.42□□□□□ -2.18
BRCA1-220ENST00000492859 NBPF19A0A087WUL8 3843 aa1.41□□□□□ -2.18
BRCA1-220ENST00000492859 NF1P21359 2839 aa1.41□□□□□ -2.18
BRCA1-220ENST00000492859 DEFB135Q30KP9 77 aa1.41□□□□□ -2.18
BRCA1-220ENST00000492859 ITPR1Q14643 2758 aa1.41□□□□□ -2.18
BRCA1-220ENST00000492859 HTTP42858 3142 aa1.4□□□□□ -2.18
BRCA1-220ENST00000492859 USP24Q9UPU5 2620 aa1.4□□□□□ -2.18
BRCA1-220ENST00000492859 RIF1Q5UIP0 2472 aaKnown RBP1.4□□□□□ -2.19
BRCA1-220ENST00000492859 KRTAP5-5Q701N2 237 aaPredicted RBP1.4□□□□□ -2.19
BRCA1-220ENST00000492859 VPS13DQ5THJ4 4388 aa1.4□□□□□ -2.19
BRCA1-220ENST00000492859 ITPR3Q14573 2671 aa1.4□□□□□ -2.19
BRCA1-220ENST00000492859 EPG5Q9HCE0 2579 aa1.39□□□□□ -2.19
BRCA1-220ENST00000492859 TENM4Q6N022 2769 aa1.39□□□□□ -2.19
BRCA1-220ENST00000492859 ATMQ13315 3056 aa1.39□□□□□ -2.19
BRCA1-220ENST00000492859 COL12A1Q99715 3063 aa1.39□□□□□ -2.19
BRCA1-220ENST00000492859 PTPN13Q12923 2485 aa1.39□□□□□ -2.19
BRCA1-220ENST00000492859 KRTAP12-3P60328 96 aa1.39□□□□□ -2.19
BRCA1-220ENST00000492859 TRIOO75962 3097 aa1.39□□□□□ -2.19
BRCA1-220ENST00000492859 DNAH11Q96DT5 4516 aa1.38□□□□□ -2.19
BRCA1-220ENST00000492859 TNP1P09430 55 aa1.38□□□□□ -2.19
BRCA1-220ENST00000492859 BOD1L1Q8NFC6 3051 aa1.38□□□□□ -2.19
BRCA1-220ENST00000492859 FAM186AA6NE01 2351 aa1.37□□□□□ -2.19
BRCA1-220ENST00000492859 SZT2Q5T011 3432 aa1.37□□□□□ -2.19
BRCA1-220ENST00000492859 CHD8Q9HCK8 2581 aa1.37□□□□□ -2.19
BRCA1-220ENST00000492859 DEFB124Q8NES8 71 aa1.37□□□□□ -2.19
BRCA1-220ENST00000492859 FLNCQ14315 2725 aa1.37□□□□□ -2.19
BRCA1-220ENST00000492859 FBN2P35556 2912 aa1.37□□□□□ -2.19
BRCA1-220ENST00000492859 MKI67P46013 3256 aaKnown RBP1.36□□□□□ -2.19
BRCA1-220ENST00000492859 LRRK2Q5S007 2527 aa1.36□□□□□ -2.19
BRCA1-220ENST00000492859 A0A096LPF7 62 aa1.36□□□□□ -2.19
BRCA1-220ENST00000492859 KRTAP2-3P0C7H8 128 aa1.36□□□□□ -2.19
BRCA1-220ENST00000492859 SPART-AS1P0CW21 52 aa1.36□□□□□ -2.19
BRCA1-220ENST00000492859 KRTAP2-4Q9BYR9 128 aa1.36□□□□□ -2.19
BRCA1-220ENST00000492859 KRTAP2-1Q9BYU5 128 aa1.36□□□□□ -2.19
BRCA1-220ENST00000492859 GCN1Q92616 2671 aaKnown RBP1.36□□□□□ -2.19
BRCA1-220ENST00000492859 LRBAP50851 2863 aa1.36□□□□□ -2.19
BRCA1-220ENST00000492859 APCP25054 2843 aa1.36□□□□□ -2.19
BRCA1-220ENST00000492859 HIVEP3Q5T1R4 2406 aa1.35□□□□□ -2.19
BRCA1-220ENST00000492859 HELZ2Q9BYK8 2649 aaKnown RBP1.35□□□□□ -2.19
BRCA1-220ENST00000492859 MAP1AP78559 2803 aaPredicted RBP1.34□□□□□ -2.19
BRCA1-220ENST00000492859 DNAH12Q6ZR08 3092 aa1.34□□□□□ -2.19
BRCA1-220ENST00000492859 COL7A1Q02388 2944 aa1.34□□□□□ -2.19
BRCA1-220ENST00000492859 M0R2T5 61 aa1.34□□□□□ -2.2
BRCA1-220ENST00000492859 DMXL1Q9Y485 3027 aa1.33□□□□□ -2.2
BRCA1-220ENST00000492859 ZZEF1O43149 2961 aa1.33□□□□□ -2.2
BRCA1-220ENST00000492859 AKAP9Q99996 3911 aa1.33□□□□□ -2.2
BRCA1-220ENST00000492859 LYSTQ99698 3801 aa1.32□□□□□ -2.2
BRCA1-220ENST00000492859 DMXL2Q8TDJ6 3036 aa1.32□□□□□ -2.2
BRCA1-220ENST00000492859 SETXQ7Z333 2677 aaKnown RBP1.32□□□□□ -2.2
BRCA1-220ENST00000492859 SPENQ96T58 3664 aaKnown RBP1.31□□□□□ -2.2
BRCA1-220ENST00000492859 NBEAL2Q6ZNJ1 2754 aa1.31□□□□□ -2.2
BRCA1-220ENST00000492859 NCOR2Q9Y618 2525 aa1.3□□□□□ -2.2
BRCA1-220ENST00000492859 MYCBP2O75592 4640 aa1.3□□□□□ -2.2
BRCA1-220ENST00000492859 SPG11Q96JI7 2443 aa1.3□□□□□ -2.2
BRCA1-220ENST00000492859 UTP20O75691 2785 aaKnown RBP1.3□□□□□ -2.2
BRCA1-220ENST00000492859 CFAP47Q6ZTR5 3102 aa1.3□□□□□ -2.2
BRCA1-220ENST00000492859 CACNA1AO00555 2505 aa1.3□□□□□ -2.2
BRCA1-220ENST00000492859 SONP18583 2426 aaKnown RBP1.29□□□□□ -2.2
BRCA1-220ENST00000492859 BSNQ9UPA5 3926 aa1.29□□□□□ -2.2
BRCA1-220ENST00000492859 TACC2O95359 2948 aa1.29□□□□□ -2.2
BRCA1-220ENST00000492859 CELSR3Q9NYQ7 3312 aa1.29□□□□□ -2.2
BRCA1-220ENST00000492859 VPS13AQ96RL7 3174 aa1.28□□□□□ -2.2
BRCA1-220ENST00000492859 C9orf92A6NGG3 77 aa1.28□□□□□ -2.2
BRCA1-220ENST00000492859 ZANQ9Y493 2812 aa1.28□□□□□ -2.21
BRCA1-220ENST00000492859 KRTAP21-3Q3LHN1 58 aa1.27□□□□□ -2.21
BRCA1-220ENST00000492859 LINC01556Q5JQF7 62 aa1.27□□□□□ -2.21
BRCA1-220ENST00000492859 SMR3AQ99954 134 aa1.27□□□□□ -2.21
BRCA1-220ENST00000492859 SRCAPQ6ZRS2 3230 aa1.27□□□□□ -2.21
BRCA1-220ENST00000492859 KMT2AQ03164 3969 aa1.27□□□□□ -2.21
BRCA1-220ENST00000492859 DCHS1Q96JQ0 3298 aa1.27□□□□□ -2.21
BRCA1-220ENST00000492859 STAB1Q9NY15 2570 aa1.27□□□□□ -2.21
BRCA1-220ENST00000492859 KALRNO60229 2985 aa1.27□□□□□ -2.21
BRCA1-220ENST00000492859 H3BNG1 76 aa1.26□□□□□ -2.21
BRCA1-220ENST00000492859 LCE1CQ5T751 118 aa1.26□□□□□ -2.21
BRCA1-220ENST00000492859 LCE1BQ5T7P3 118 aa1.26□□□□□ -2.21
BRCA1-220ENST00000492859 MTORP42345 2549 aa1.26□□□□□ -2.21
BRCA1-220ENST00000492859 FREM2Q5SZK8 3169 aa1.25□□□□□ -2.21
BRCA1-220ENST00000492859 DNAH8Q96JB1 4490 aa1.25□□□□□ -2.21
BRCA1-220ENST00000492859 HIVEP1P15822 2718 aa1.25□□□□□ -2.21
BRCA1-220ENST00000492859 VPS13BQ7Z7G8 4022 aa1.24□□□□□ -2.21
BRCA1-220ENST00000492859 NIPBLQ6KC79 2804 aaeCLIP1.24□□□□□ -2.21
BRCA1-220ENST00000492859 PKD1L1Q8TDX9 2849 aa1.24□□□□□ -2.21
BRCA1-220ENST00000492859 ZNF469Q96JG9 3925 aaPredicted RBP1.24□□□□□ -2.21
BRCA1-220ENST00000492859 CFAP46Q8IYW2 2715 aa1.24□□□□□ -2.21
BRCA1-220ENST00000492859 Q9Y3F1 56 aa1.24□□□□□ -2.21
BRCA1-220ENST00000492859 SACSQ9NZJ4 4579 aa1.24□□□□□ -2.21
BRCA1-220ENST00000492859 GOLGB1Q14789 3259 aaKnown RBP1.24□□□□□ -2.21
BRCA1-220ENST00000492859 ANKHD1Q8IWZ3 2542 aaKnown RBP1.23□□□□□ -2.21
BRCA1-220ENST00000492859 TNXBP22105 4242 aa1.23□□□□□ -2.21
BRCA1-220ENST00000492859 SPEGQ15772 3267 aa1.23□□□□□ -2.21
BRCA1-220ENST00000492859 ACANP16112 2415 aa1.23□□□□□ -2.21
BRCA1-220ENST00000492859 FBN3Q75N90 2809 aa1.22□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms