RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 Q6ZR54 194 aa3.57□□□□□ -1.84
VPS41-214ENST00000490924 BRK1Q8WUW1 75 aa3.57□□□□□ -1.84
VPS41-214ENST00000490924 APLNQ9ULZ1 77 aa3.57□□□□□ -1.84
VPS41-214ENST00000490924 MMP24-AS1A0A0U1RRL7 71 aa3.56□□□□□ -1.84
VPS41-214ENST00000490924 LOC101927531A0A1B0GV80 90 aa3.56□□□□□ -1.84
VPS41-214ENST00000490924 LRCOL1A6NCL2 159 aa3.56□□□□□ -1.84
VPS41-214ENST00000490924 K7EIL1 84 aa3.56□□□□□ -1.84
VPS41-214ENST00000490924 LINC00208Q96KT6 92 aa3.56□□□□□ -1.84
VPS41-214ENST00000490924 CMYA5Q8N3K9 4069 aa3.56□□□□□ -1.84
VPS41-214ENST00000490924 DYNC2H1Q8NCM8 4307 aaKnown RBP3.56□□□□□ -1.84
VPS41-214ENST00000490924 IGKV2-24A0A0C4DH68 120 aa3.54□□□□□ -1.84
VPS41-214ENST00000490924 NUPR2A6NF83 97 aa3.54□□□□□ -1.84
VPS41-214ENST00000490924 WFDC13Q8IUB5 93 aa3.54□□□□□ -1.84
VPS41-214ENST00000490924 SPACA4Q8TDM5 124 aa3.54□□□□□ -1.84
VPS41-214ENST00000490924 HUWE1Q7Z6Z7 4374 aaKnown RBP3.53□□□□□ -1.84
VPS41-214ENST00000490924 NBDYA0A0U1RRE5 68 aa3.53□□□□□ -1.84
VPS41-214ENST00000490924 CD164Q04900 197 aa3.53□□□□□ -1.84
VPS41-214ENST00000490924 Q6ZRN7 208 aaPredicted RBP3.53□□□□□ -1.84
VPS41-214ENST00000490924 Q75L30 129 aa3.53□□□□□ -1.84
VPS41-214ENST00000490924 UBE2DNLQ8IWF7 75 aa3.53□□□□□ -1.84
VPS41-214ENST00000490924 Q96NJ1 140 aa3.53□□□□□ -1.84
VPS41-214ENST00000490924 STAB2Q8WWQ8 2551 aa3.53□□□□□ -1.85
VPS41-214ENST00000490924 PHF5AQ7RTV0 110 aaKnown RBP3.52□□□□□ -1.85
VPS41-214ENST00000490924 A0A1B0GVX0 72 aa3.51□□□□□ -1.85
VPS41-214ENST00000490924 Q5VV11 94 aa3.51□□□□□ -1.85
VPS41-214ENST00000490924 C8orf17Q9NRJ1 99 aa3.51□□□□□ -1.85
VPS41-214ENST00000490924 ATP11AUNQ6ZP68 121 aa3.5□□□□□ -1.85
VPS41-214ENST00000490924 KRTAP11-1Q8IUC1 163 aa3.5□□□□□ -1.85
VPS41-214ENST00000490924 PLAC8Q9NZF1 115 aa3.5□□□□□ -1.85
VPS41-214ENST00000490924 LINC01558Q9Y6Z2 57 aa3.5□□□□□ -1.85
VPS41-214ENST00000490924 IGLV5-52A0A0A0MRZ9 124 aa3.49□□□□□ -1.85
VPS41-214ENST00000490924 C8orf87E5RJ46 101 aa3.49□□□□□ -1.85
VPS41-214ENST00000490924 ZNF861PO60384 105 aa3.49□□□□□ -1.85
VPS41-214ENST00000490924 CHTF8P0CG12 524 aa3.49□□□□□ -1.85
VPS41-214ENST00000490924 COA5Q86WW8 74 aa3.49□□□□□ -1.85
VPS41-214ENST00000490924 MRPL34Q9BQ48 92 aaKnown RBP3.49□□□□□ -1.85
VPS41-214ENST00000490924 SACSQ9NZJ4 4579 aa3.49□□□□□ -1.85
VPS41-214ENST00000490924 CDK2AP2O75956 126 aa3.48□□□□□ -1.85
VPS41-214ENST00000490924 PMAIP1Q13794 54 aa3.48□□□□□ -1.85
VPS41-214ENST00000490924 DEFB116Q30KQ4 102 aa3.48□□□□□ -1.85
VPS41-214ENST00000490924 HYDINQ4G0P3 5121 aa3.47□□□□□ -1.85
VPS41-214ENST00000490924 A8MUN3 132 aa3.47□□□□□ -1.85
VPS41-214ENST00000490924 SSBP3-AS1Q7Z2R9 100 aa3.47□□□□□ -1.85
VPS41-214ENST00000490924 RYR2Q92736 4967 aa3.47□□□□□ -1.85
VPS41-214ENST00000490924 A0A087WTM6 91 aa3.46□□□□□ -1.86
VPS41-214ENST00000490924 A0A087X002 238 aa3.46□□□□□ -1.86
VPS41-214ENST00000490924 A0A0G2JQZ4 141 aa3.46□□□□□ -1.86
VPS41-214ENST00000490924 PSPHP1O15172 72 aa3.46□□□□□ -1.86
VPS41-214ENST00000490924 CDC42SE1Q9NRR8 79 aa3.46□□□□□ -1.86
VPS41-214ENST00000490924 DNAH9Q9NYC9 4486 aa3.45□□□□□ -1.86
VPS41-214ENST00000490924 CHKB-CPT1BH3BT56 60 aa3.45□□□□□ -1.86
VPS41-214ENST00000490924 KRTAP13-3Q3SY46 172 aa3.45□□□□□ -1.86
VPS41-214ENST00000490924 PCLOQ9Y6V0 5065 aa3.45□□□□□ -1.86
VPS41-214ENST00000490924 LYSTQ99698 3801 aa3.44□□□□□ -1.86
VPS41-214ENST00000490924 NDUFS5O43920 106 aa3.44□□□□□ -1.86
VPS41-214ENST00000490924 PRR4Q16378 134 aa3.44□□□□□ -1.86
VPS41-214ENST00000490924 PRR26Q8N8Z3 221 aa3.44□□□□□ -1.86
VPS41-214ENST00000490924 PRR15LQ9BU68 103 aa3.44□□□□□ -1.86
VPS41-214ENST00000490924 PSORS1C2Q9UIG4 136 aa3.44□□□□□ -1.86
VPS41-214ENST00000490924 DNAH10Q8IVF4 4471 aa3.43□□□□□ -1.86
VPS41-214ENST00000490924 PANO1I0J062 215 aa3.43□□□□□ -1.86
VPS41-214ENST00000490924 HERC2O95714 4834 aa3.43□□□□□ -1.86
VPS41-214ENST00000490924 VPS13DQ5THJ4 4388 aa3.43□□□□□ -1.86
VPS41-214ENST00000490924 IGHV6-1A0A0B4J1U7 121 aa3.42□□□□□ -1.86
VPS41-214ENST00000490924 IGLV9-49A0A0B4J1Y8 123 aa3.42□□□□□ -1.86
VPS41-214ENST00000490924 RTL8CO15255 209 aa3.42□□□□□ -1.86
VPS41-214ENST00000490924 PRB2P02812 416 aaPredicted RBP3.42□□□□□ -1.86
VPS41-214ENST00000490924 ACYP2P14621 99 aa3.42□□□□□ -1.86
VPS41-214ENST00000490924 KTN1-AS1Q86SY8 53 aa3.42□□□□□ -1.86
VPS41-214ENST00000490924 DMAC1Q96GE9 116 aa3.42□□□□□ -1.86
VPS41-214ENST00000490924 RYR1P21817 5038 aa3.42□□□□□ -1.86
VPS41-214ENST00000490924 IGLV7-43P04211 117 aa3.41□□□□□ -1.86
VPS41-214ENST00000490924 HRES1P13985 223 aa3.41□□□□□ -1.86
VPS41-214ENST00000490924 SEC61GP60059 68 aa3.41□□□□□ -1.86
VPS41-214ENST00000490924 PLECQ15149 4684 aaKnown RBP3.4□□□□□ -1.87
VPS41-214ENST00000490924 A6NED7 52 aa3.4□□□□□ -1.87
VPS41-214ENST00000490924 SRRM2Q9UQ35 2752 aaKnown RBP3.4□□□□□ -1.87
VPS41-214ENST00000490924 A6NN06 94 aa3.39□□□□□ -1.87
VPS41-214ENST00000490924 LCA10Q71F78 164 aa3.39□□□□□ -1.87
VPS41-214ENST00000490924 HECTD4Q9Y4D8 3996 aa3.38□□□□□ -1.87
VPS41-214ENST00000490924 DNAH7Q8WXX0 4024 aa3.38□□□□□ -1.87
VPS41-214ENST00000490924 PCOTHQ58A44 107 aa3.38□□□□□ -1.87
VPS41-214ENST00000490924 DNAH17Q9UFH2 4485 aa3.38□□□□□ -1.87
VPS41-214ENST00000490924 COL7A1Q02388 2944 aa3.37□□□□□ -1.87
VPS41-214ENST00000490924 RPS29P62273 56 aaKnown RBP3.37□□□□□ -1.87
VPS41-214ENST00000490924 C1orf134Q5TEV5 83 aa3.37□□□□□ -1.87
VPS41-214ENST00000490924 KRTAP5-1Q6L8H4 278 aa3.37□□□□□ -1.87
VPS41-214ENST00000490924 TENM2Q9NT68 2774 aa3.37□□□□□ -1.87
VPS41-214ENST00000490924 LINC00313P59037 77 aa3.36□□□□□ -1.87
VPS41-214ENST00000490924 KRTAP10-5P60370 271 aa3.36□□□□□ -1.87
VPS41-214ENST00000490924 SPAG11AQ6PDA7 123 aa3.36□□□□□ -1.87
VPS41-214ENST00000490924 Q6ZSA8 131 aa3.36□□□□□ -1.87
VPS41-214ENST00000490924 CSMD3Q7Z407 3707 aa3.36□□□□□ -1.87
VPS41-214ENST00000490924 DNAH6Q9C0G6 4158 aa3.35□□□□□ -1.87
VPS41-214ENST00000490924 Q5W150 140 aa3.35□□□□□ -1.87
VPS41-214ENST00000490924 C7orf65Q6ZTY9 151 aa3.35□□□□□ -1.87
VPS41-214ENST00000490924 DNAH8Q96JB1 4490 aa3.35□□□□□ -1.87
VPS41-214ENST00000490924 NOTCH2NLQ7Z3S9 236 aa3.34□□□□□ -1.87
VPS41-214ENST00000490924 DNAH2Q9P225 4427 aa3.33□□□□□ -1.88
VPS41-214ENST00000490924 SPATA8Q6RVD6 105 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms