RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 A0A1B0GW54 56 aa7.31□□□□□ -1.24
HDAC6-230ENST00000488543 HCG22E2RYF7 251 aa7.3□□□□□ -1.24
HDAC6-230ENST00000488543 ZNF706Q9Y5V0 76 aaPredicted RBP7.29□□□□□ -1.24
HDAC6-230ENST00000488543 ATP5EP56381 51 aaPredicted RBP7.27□□□□□ -1.25
HDAC6-230ENST00000488543 ANAPC11Q9NYG5 84 aa7.26□□□□□ -1.25
HDAC6-230ENST00000488543 C8orf87E5RJ46 101 aa7.26□□□□□ -1.25
HDAC6-230ENST00000488543 ZCCHC13Q8WW36 166 aaKnown RBP7.25□□□□□ -1.25
HDAC6-230ENST00000488543 IGLV9-49A0A0B4J1Y8 123 aa7.24□□□□□ -1.25
HDAC6-230ENST00000488543 KIAA1109Q2LD37 5005 aa7.24□□□□□ -1.25
HDAC6-230ENST00000488543 C1orf64Q8NEQ6 169 aa7.23□□□□□ -1.25
HDAC6-230ENST00000488543 HSPG2P98160 4391 aa7.23□□□□□ -1.25
HDAC6-230ENST00000488543 RYR1P21817 5038 aa7.2□□□□□ -1.26
HDAC6-230ENST00000488543 hDV103S1A0JD37 113 aa7.2□□□□□ -1.26
HDAC6-230ENST00000488543 MOBPQ13875 183 aa7.2□□□□□ -1.26
HDAC6-230ENST00000488543 LINC00208Q96KT6 92 aa7.2□□□□□ -1.26
HDAC6-230ENST00000488543 BRK1Q8WUW1 75 aa7.2□□□□□ -1.26
HDAC6-230ENST00000488543 KRTAP17-1Q9BYP8 105 aa7.19□□□□□ -1.26
HDAC6-230ENST00000488543 RBM12B-AS1Q9P1G2 102 aa7.19□□□□□ -1.26
HDAC6-230ENST00000488543 KRTAP29-1A8MX34 341 aaPredicted RBP7.19□□□□□ -1.26
HDAC6-230ENST00000488543 CASC2Q6XLA1 102 aa7.19□□□□□ -1.26
HDAC6-230ENST00000488543 KRTAP10-4P60372 401 aaPredicted RBP7.18□□□□□ -1.26
HDAC6-230ENST00000488543 LINC00472Q9H8W2 130 aa7.17□□□□□ -1.26
HDAC6-230ENST00000488543 PRR15Q8IV56 129 aa7.17□□□□□ -1.26
HDAC6-230ENST00000488543 H0Y9P7 68 aa7.16□□□□□ -1.26
HDAC6-230ENST00000488543 CDK2AP2O75956 126 aa7.15□□□□□ -1.26
HDAC6-230ENST00000488543 TRAV22A0A0B4J277 110 aa7.14□□□□□ -1.27
HDAC6-230ENST00000488543 A8MWP4 228 aa7.14□□□□□ -1.27
HDAC6-230ENST00000488543 KRTAP1-4P0C5Y4 121 aa7.13□□□□□ -1.27
HDAC6-230ENST00000488543 MP68P56378 58 aa7.13□□□□□ -1.27
HDAC6-230ENST00000488543 A0A087X002 238 aa7.13□□□□□ -1.27
HDAC6-230ENST00000488543 PSPHP1O15172 72 aa7.13□□□□□ -1.27
HDAC6-230ENST00000488543 SEC61BP60468 96 aaKnown RBP7.13□□□□□ -1.27
HDAC6-230ENST00000488543 KRTAP13-2Q52LG2 175 aa7.12□□□□□ -1.27
HDAC6-230ENST00000488543 MMP24-AS1A0A0U1RRL7 71 aa7.11□□□□□ -1.27
HDAC6-230ENST00000488543 SPINK6Q6UWN8 80 aa7.11□□□□□ -1.27
HDAC6-230ENST00000488543 Q96NJ1 140 aa7.11□□□□□ -1.27
HDAC6-230ENST00000488543 Q5VSD8 79 aa7.1□□□□□ -1.27
HDAC6-230ENST00000488543 SSBP3-AS1Q7Z2R9 100 aa7.1□□□□□ -1.27
HDAC6-230ENST00000488543 PCOTHQ58A44 107 aa7.07□□□□□ -1.28
HDAC6-230ENST00000488543 CYP4F30PQ9H0H9 118 aa7.07□□□□□ -1.28
HDAC6-230ENST00000488543 IGHV6-1A0A0B4J1U7 121 aa7.06□□□□□ -1.28
HDAC6-230ENST00000488543 NOTCH2NLQ7Z3S9 236 aa7.06□□□□□ -1.28
HDAC6-230ENST00000488543 LRP1Q07954 4544 aaKnown RBP7.05□□□□□ -1.28
HDAC6-230ENST00000488543 FLG2Q5D862 2391 aaPredicted RBP7.04□□□□□ -1.28
HDAC6-230ENST00000488543 A8MUN3 132 aa7.04□□□□□ -1.28
HDAC6-230ENST00000488543 NDUFS5O43920 106 aa7.04□□□□□ -1.28
HDAC6-230ENST00000488543 NDUFB1O75438 58 aa7.04□□□□□ -1.28
HDAC6-230ENST00000488543 A8MU10 97 aa7.04□□□□□ -1.28
HDAC6-230ENST00000488543 Q1T7F1 81 aa7.03□□□□□ -1.28
HDAC6-230ENST00000488543 PKHD1L1Q86WI1 4243 aa7.03□□□□□ -1.28
HDAC6-230ENST00000488543 Q8N1X5 172 aa7.02□□□□□ -1.29
HDAC6-230ENST00000488543 C8orf17Q9NRJ1 99 aa7.01□□□□□ -1.29
HDAC6-230ENST00000488543 KRTAP4-5Q9BYR2 181 aa7.01□□□□□ -1.29
HDAC6-230ENST00000488543 MYCBP2O75592 4640 aa7.01□□□□□ -1.29
HDAC6-230ENST00000488543 ASB16-AS1Q495Z4 193 aa7□□□□□ -1.29
HDAC6-230ENST00000488543 TYMSOSQ8TAI1 123 aa6.99□□□□□ -1.29
HDAC6-230ENST00000488543 BIRC6Q9NR09 4857 aa6.99□□□□□ -1.29
HDAC6-230ENST00000488543 A0A1B0GVX0 72 aa6.97□□□□□ -1.29
HDAC6-230ENST00000488543 SPANXA2-OT1Q8N9U9 137 aa6.96□□□□□ -1.3
HDAC6-230ENST00000488543 H3BPC8 53 aa6.95□□□□□ -1.3
HDAC6-230ENST00000488543 COA5Q86WW8 74 aa6.95□□□□□ -1.3
HDAC6-230ENST00000488543 Q5VV11 94 aa6.95□□□□□ -1.3
HDAC6-230ENST00000488543 Q8N9P0 234 aaPredicted RBP6.94□□□□□ -1.3
HDAC6-230ENST00000488543 PRR15LQ9BU68 103 aa6.93□□□□□ -1.3
HDAC6-230ENST00000488543 TNXBP22105 4242 aa6.92□□□□□ -1.3
HDAC6-230ENST00000488543 FAT3Q8TDW7 4589 aa6.92□□□□□ -1.3
HDAC6-230ENST00000488543 IGLV7-46A0A075B6I9 117 aa6.91□□□□□ -1.3
HDAC6-230ENST00000488543 MRPL34Q9BQ48 92 aaKnown RBP6.91□□□□□ -1.3
HDAC6-230ENST00000488543 ABCA13Q86UQ4 5058 aa6.91□□□□□ -1.3
HDAC6-230ENST00000488543 Q5W150 140 aa6.91□□□□□ -1.3
HDAC6-230ENST00000488543 LIMD2Q9BT23 127 aa6.91□□□□□ -1.3
HDAC6-230ENST00000488543 LINC00304Q8N9R0 145 aa6.9□□□□□ -1.3
HDAC6-230ENST00000488543 SPINK1P00995 79 aa6.9□□□□□ -1.31
HDAC6-230ENST00000488543 CHKB-CPT1BH3BT56 60 aa6.89□□□□□ -1.31
HDAC6-230ENST00000488543 RETNLBQ9BQ08 111 aa6.89□□□□□ -1.31
HDAC6-230ENST00000488543 HERC2O95714 4834 aa6.89□□□□□ -1.31
HDAC6-230ENST00000488543 SPAG11AQ6PDA7 123 aa6.88□□□□□ -1.31
HDAC6-230ENST00000488543 KTN1-AS1Q86SY8 53 aa6.88□□□□□ -1.31
HDAC6-230ENST00000488543 TP53AIP1Q9HCN2 124 aa6.88□□□□□ -1.31
HDAC6-230ENST00000488543 DMBT1Q9UGM3 2413 aaPredicted RBP6.88□□□□□ -1.31
HDAC6-230ENST00000488543 LINC00313P59037 77 aa6.87□□□□□ -1.31
HDAC6-230ENST00000488543 KRTAP10-8P60410 259 aa6.87□□□□□ -1.31
HDAC6-230ENST00000488543 RPS29P62273 56 aaKnown RBP6.87□□□□□ -1.31
HDAC6-230ENST00000488543 HRES1P13985 223 aa6.86□□□□□ -1.31
HDAC6-230ENST00000488543 MT1HL1P0DM35 61 aa6.83□□□□□ -1.32
HDAC6-230ENST00000488543 KRTAP3-3Q9BYR6 98 aa6.82□□□□□ -1.32
HDAC6-230ENST00000488543 KRTAP3-2Q9BYR7 98 aa6.82□□□□□ -1.32
HDAC6-230ENST00000488543 A6NED7 52 aa6.8□□□□□ -1.32
HDAC6-230ENST00000488543 KRTAP13-3Q3SY46 172 aa6.8□□□□□ -1.32
HDAC6-230ENST00000488543 LCA10Q71F78 164 aa6.8□□□□□ -1.32
HDAC6-230ENST00000488543 SPTSSBQ8NFR3 76 aa6.79□□□□□ -1.32
HDAC6-230ENST00000488543 KRTAP16-1A8MUX0 517 aa6.78□□□□□ -1.32
HDAC6-230ENST00000488543 PCLOQ9Y6V0 5065 aa6.77□□□□□ -1.33
HDAC6-230ENST00000488543 LOC101927531A0A1B0GV80 90 aa6.75□□□□□ -1.33
HDAC6-230ENST00000488543 SPINK7P58062 85 aa6.75□□□□□ -1.33
HDAC6-230ENST00000488543 LINC01558Q9Y6Z2 57 aa6.73□□□□□ -1.33
HDAC6-230ENST00000488543 PRAC1Q96KF2 57 aa6.7□□□□□ -1.34
HDAC6-230ENST00000488543 IGKV2D-30A0A075B6S6 120 aa6.66□□□□□ -1.34
HDAC6-230ENST00000488543 IGKV2-30P06310 120 aa6.66□□□□□ -1.34
HDAC6-230ENST00000488543 CDC42SE1Q9NRR8 79 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms