RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 ZNF462Q96JM2 2506 aa1.27□□□□□ -2.21
USP48-209ENST00000487880 ALMS1Q8TCU4 4167 aa1.27□□□□□ -2.21
USP48-209ENST00000487880 Q96NJ1 140 aa1.27□□□□□ -2.21
USP48-209ENST00000487880 CELSR3Q9NYQ7 3312 aa1.27□□□□□ -2.21
USP48-209ENST00000487880 DMDP11532 3685 aa1.27□□□□□ -2.21
USP48-209ENST00000487880 SPTAN1Q13813 2472 aaKnown RBP1.26□□□□□ -2.21
USP48-209ENST00000487880 ABCA2Q9BZC7 2435 aa1.26□□□□□ -2.21
USP48-209ENST00000487880 NUPR2A6NF83 97 aa1.26□□□□□ -2.21
USP48-209ENST00000487880 MAP1AP78559 2803 aaPredicted RBP1.26□□□□□ -2.21
USP48-209ENST00000487880 SPTA1P02549 2419 aa1.26□□□□□ -2.21
USP48-209ENST00000487880 DMXL1Q9Y485 3027 aa1.26□□□□□ -2.21
USP48-209ENST00000487880 ACACAQ13085 2346 aa1.26□□□□□ -2.21
USP48-209ENST00000487880 SMG1Q96Q15 3661 aaKnown RBP1.25□□□□□ -2.21
USP48-209ENST00000487880 SPENQ96T58 3664 aaKnown RBP1.25□□□□□ -2.21
USP48-209ENST00000487880 DCHS2Q6V1P9 2916 aa1.25□□□□□ -2.21
USP48-209ENST00000487880 COX6B2Q6YFQ2 88 aa1.24□□□□□ -2.21
USP48-209ENST00000487880 HRNRQ86YZ3 2850 aaPredicted RBP1.24□□□□□ -2.21
USP48-209ENST00000487880 CELSR1Q9NYQ6 3014 aa1.23□□□□□ -2.21
USP48-209ENST00000487880 CSMD1Q96PZ7 3565 aa1.23□□□□□ -2.21
USP48-209ENST00000487880 CSPG4Q6UVK1 2322 aa1.23□□□□□ -2.21
USP48-209ENST00000487880 LRBAP50851 2863 aa1.23□□□□□ -2.21
USP48-209ENST00000487880 BOD1L1Q8NFC6 3051 aa1.23□□□□□ -2.21
USP48-209ENST00000487880 ITPR1Q14643 2758 aa1.23□□□□□ -2.21
USP48-209ENST00000487880 PRLHP81277 87 aa1.23□□□□□ -2.21
USP48-209ENST00000487880 DEFB135Q30KP9 77 aa1.23□□□□□ -2.21
USP48-209ENST00000487880 LOC400499M0QZD8 3231 aa1.23□□□□□ -2.21
USP48-209ENST00000487880 NBASA2RRP1 2371 aa1.23□□□□□ -2.21
USP48-209ENST00000487880 MYO15AQ9UKN7 3530 aa1.23□□□□□ -2.21
USP48-209ENST00000487880 SPG11Q96JI7 2443 aa1.23□□□□□ -2.21
USP48-209ENST00000487880 ASH1LQ9NR48 2969 aaKnown RBP1.22□□□□□ -2.21
USP48-209ENST00000487880 H0YAA0 97 aa1.22□□□□□ -2.21
USP48-209ENST00000487880 DEFB113Q30KQ7 82 aa1.22□□□□□ -2.21
USP48-209ENST00000487880 ATMQ13315 3056 aa1.22□□□□□ -2.21
USP48-209ENST00000487880 COL12A1Q99715 3063 aa1.22□□□□□ -2.21
USP48-209ENST00000487880 ZFHX4Q86UP3 3567 aa1.21□□□□□ -2.22
USP48-209ENST00000487880 TLN1Q9Y490 2541 aaKnown RBP1.21□□□□□ -2.22
USP48-209ENST00000487880 CELSR2Q9HCU4 2923 aa1.21□□□□□ -2.22
USP48-209ENST00000487880 BSNQ9UPA5 3926 aa1.21□□□□□ -2.22
USP48-209ENST00000487880 ANKRD11Q6UB99 2663 aaPredicted RBP1.21□□□□□ -2.22
USP48-209ENST00000487880 A0A087WTM6 91 aa1.21□□□□□ -2.22
USP48-209ENST00000487880 A0A096LNI7 61 aa1.21□□□□□ -2.22
USP48-209ENST00000487880 HTN3P15516 51 aa1.21□□□□□ -2.22
USP48-209ENST00000487880 H1FX-AS1Q4G0G2 97 aa1.21□□□□□ -2.22
USP48-209ENST00000487880 SSBP3-AS1Q7Z2R9 100 aa1.21□□□□□ -2.22
USP48-209ENST00000487880 NBPF19A0A087WUL8 3843 aa1.2□□□□□ -2.22
USP48-209ENST00000487880 CHD6Q8TD26 2715 aa1.2□□□□□ -2.22
USP48-209ENST00000487880 TLN2Q9Y4G6 2542 aa1.2□□□□□ -2.22
USP48-209ENST00000487880 NCOR2Q9Y618 2525 aa1.2□□□□□ -2.22
USP48-209ENST00000487880 EYSQ5T1H1 3165 aa1.2□□□□□ -2.22
USP48-209ENST00000487880 K7EIL1 84 aa1.2□□□□□ -2.22
USP48-209ENST00000487880 AKAP9Q99996 3911 aa1.2□□□□□ -2.22
USP48-209ENST00000487880 RIF1Q5UIP0 2472 aaKnown RBP1.2□□□□□ -2.22
USP48-209ENST00000487880 ANKRD17O75179 2603 aaKnown RBP1.19□□□□□ -2.22
USP48-209ENST00000487880 TENM2Q9NT68 2774 aa1.19□□□□□ -2.22
USP48-209ENST00000487880 HIVEP3Q5T1R4 2406 aa1.19□□□□□ -2.22
USP48-209ENST00000487880 GVINP1Q7Z2Y8 2422 aa1.19□□□□□ -2.22
USP48-209ENST00000487880 DEFB4AO15263 64 aa1.19□□□□□ -2.22
USP48-209ENST00000487880 RPL37P61927 97 aaKnown RBP1.19□□□□□ -2.22
USP48-209ENST00000487880 APCP25054 2843 aa1.19□□□□□ -2.22
USP48-209ENST00000487880 OTOGQ6ZRI0 2925 aa1.19□□□□□ -2.22
USP48-209ENST00000487880 CEP295Q9C0D2 2601 aa1.19□□□□□ -2.22
USP48-209ENST00000487880 MYO9AB2RTY4 2548 aa1.18□□□□□ -2.22
USP48-209ENST00000487880 NBDYA0A0U1RRE5 68 aa1.18□□□□□ -2.22
USP48-209ENST00000487880 DEFB123Q8N688 67 aa1.18□□□□□ -2.22
USP48-209ENST00000487880 CRYBG3Q68DQ2 2970 aa1.18□□□□□ -2.22
USP48-209ENST00000487880 SPTBN4Q9H254 2564 aa1.18□□□□□ -2.22
USP48-209ENST00000487880 MXRA5Q9NR99 2828 aa1.17□□□□□ -2.22
USP48-209ENST00000487880 SETXQ7Z333 2677 aaKnown RBP1.17□□□□□ -2.22
USP48-209ENST00000487880 UTP20O75691 2785 aaKnown RBP1.17□□□□□ -2.22
USP48-209ENST00000487880 JMJD1CQ15652 2540 aa1.17□□□□□ -2.22
USP48-209ENST00000487880 CRIPTQ9P021 101 aa1.17□□□□□ -2.22
USP48-209ENST00000487880 NF1P21359 2839 aa1.17□□□□□ -2.22
USP48-209ENST00000487880 ZFYVE26Q68DK2 2539 aa1.17□□□□□ -2.22
USP48-209ENST00000487880 PTPN13Q12923 2485 aa1.16□□□□□ -2.22
USP48-209ENST00000487880 IGF2RP11717 2491 aa1.16□□□□□ -2.22
USP48-209ENST00000487880 DOPEY1Q5JWR5 2465 aa1.16□□□□□ -2.22
USP48-209ENST00000487880 ASPMQ8IZT6 3477 aa1.16□□□□□ -2.22
USP48-209ENST00000487880 USP9XQ93008 2570 aaPredicted RBP1.15□□□□□ -2.22
USP48-209ENST00000487880 MAST4O15021 2626 aa1.15□□□□□ -2.23
USP48-209ENST00000487880 RPS29P62273 56 aaKnown RBP1.15□□□□□ -2.23
USP48-209ENST00000487880 SPINK6Q6UWN8 80 aa1.15□□□□□ -2.23
USP48-209ENST00000487880 USP9YO00507 2555 aaPredicted RBP1.15□□□□□ -2.23
USP48-209ENST00000487880 NBEAL2Q6ZNJ1 2754 aa1.15□□□□□ -2.23
USP48-209ENST00000487880 SVEP1Q4LDE5 3571 aa1.15□□□□□ -2.23
USP48-209ENST00000487880 ZNF292O60281 2723 aa1.15□□□□□ -2.23
USP48-209ENST00000487880 VPS13CQ709C8 3753 aa1.14□□□□□ -2.23
USP48-209ENST00000487880 RELNP78509 3460 aa1.14□□□□□ -2.23
USP48-209ENST00000487880 F8P00451 2351 aa1.14□□□□□ -2.23
USP48-209ENST00000487880 LAMA5O15230 3695 aa1.14□□□□□ -2.23
USP48-209ENST00000487880 SPINK1P00995 79 aa1.14□□□□□ -2.23
USP48-209ENST00000487880 NAV2Q8IVL1 2488 aa1.14□□□□□ -2.23
USP48-209ENST00000487880 USP24Q9UPU5 2620 aa1.14□□□□□ -2.23
USP48-209ENST00000487880 SONP18583 2426 aaKnown RBP1.14□□□□□ -2.23
USP48-209ENST00000487880 UBR5O95071 2799 aaPredicted RBP1.13□□□□□ -2.23
USP48-209ENST00000487880 TEX15Q9BXT5 2789 aa1.13□□□□□ -2.23
USP48-209ENST00000487880 GCN1Q92616 2671 aaKnown RBP1.13□□□□□ -2.23
USP48-209ENST00000487880 DNAH1Q9P2D7 4330 aa1.13□□□□□ -2.23
USP48-209ENST00000487880 BDP1A6H8Y1 2624 aa1.12□□□□□ -2.23
USP48-209ENST00000487880 MTORP42345 2549 aa1.12□□□□□ -2.23
USP48-209ENST00000487880 PLAC4Q8WY50 150 aa1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms