RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 NIPBLQ6KC79 2804 aaeCLIP8.96□□□□□ -0.97
HLA-DQB1-209ENST00000487676 PANO1I0J062 215 aa8.96□□□□□ -0.97
HLA-DQB1-209ENST00000487676 KRTAP13-1Q8IUC0 172 aa8.94□□□□□ -0.98
HLA-DQB1-209ENST00000487676 HIVEP1P15822 2718 aa8.93□□□□□ -0.98
HLA-DQB1-209ENST00000487676 LAMA5O15230 3695 aa8.92□□□□□ -0.98
HLA-DQB1-209ENST00000487676 NSD1Q96L73 2696 aaPredicted RBP8.9□□□□□ -0.98
HLA-DQB1-209ENST00000487676 LINC00304Q8N9R0 145 aa8.9□□□□□ -0.98
HLA-DQB1-209ENST00000487676 CELSR1Q9NYQ6 3014 aa8.9□□□□□ -0.99
HLA-DQB1-209ENST00000487676 KRTAP25-1Q3LHN0 102 aa8.89□□□□□ -0.99
HLA-DQB1-209ENST00000487676 CRYBG3Q68DQ2 2970 aa8.87□□□□□ -0.99
HLA-DQB1-209ENST00000487676 A0A0D9SG42 100 aa8.86□□□□□ -0.99
HLA-DQB1-209ENST00000487676 C9orf92A6NGG3 77 aa8.86□□□□□ -0.99
HLA-DQB1-209ENST00000487676 FLG2Q5D862 2391 aaPredicted RBP8.84□□□□□ -0.99
HLA-DQB1-209ENST00000487676 SVEP1Q4LDE5 3571 aa8.84□□□□□ -0.99
HLA-DQB1-209ENST00000487676 SPENQ96T58 3664 aaKnown RBP8.83□□□□□ -1
HLA-DQB1-209ENST00000487676 H1FX-AS1Q4G0G2 97 aa8.82□□□□□ -1
HLA-DQB1-209ENST00000487676 ITPR2Q14571 2701 aa8.8□□□□□ -1
HLA-DQB1-209ENST00000487676 MUC3AQ02505 3323 aa8.8□□□□□ -1
HLA-DQB1-209ENST00000487676 ROMO1P60602 79 aa8.78□□□□□ -1
HLA-DQB1-209ENST00000487676 DMBT1Q9UGM3 2413 aaPredicted RBP8.77□□□□□ -1
HLA-DQB1-209ENST00000487676 STAB2Q8WWQ8 2551 aa8.76□□□□□ -1.01
HLA-DQB1-209ENST00000487676 RPL37P61927 97 aaKnown RBP8.72□□□□□ -1.01
HLA-DQB1-209ENST00000487676 Q6ZRN7 208 aaPredicted RBP8.68□□□□□ -1.02
HLA-DQB1-209ENST00000487676 J3QL48 77 aa8.67□□□□□ -1.02
HLA-DQB1-209ENST00000487676 KMT2BQ9UMN6 2715 aaPredicted RBP8.66□□□□□ -1.02
HLA-DQB1-209ENST00000487676 A8MUU9 505 aa8.62□□□□□ -1.03
HLA-DQB1-209ENST00000487676 KRTAP13-3Q3SY46 172 aa8.6□□□□□ -1.03
HLA-DQB1-209ENST00000487676 TENM3Q9P273 2699 aa8.6□□□□□ -1.03
HLA-DQB1-209ENST00000487676 Q6ZSA8 131 aa8.59□□□□□ -1.03
HLA-DQB1-209ENST00000487676 CUBNO60494 3623 aa8.56□□□□□ -1.04
HLA-DQB1-209ENST00000487676 SMR3BP02814 79 aaPredicted RBP8.54□□□□□ -1.04
HLA-DQB1-209ENST00000487676 KRTAP13-2Q52LG2 175 aa8.53□□□□□ -1.04
HLA-DQB1-209ENST00000487676 COX6B2Q6YFQ2 88 aa8.53□□□□□ -1.04
HLA-DQB1-209ENST00000487676 H0YAA0 97 aa8.52□□□□□ -1.05
HLA-DQB1-209ENST00000487676 KRTAP16-1A8MUX0 517 aa8.49□□□□□ -1.05
HLA-DQB1-209ENST00000487676 NDUFAF8A1L188 74 aa8.48□□□□□ -1.05
HLA-DQB1-209ENST00000487676 LUZP6Q538Z0 58 aa8.47□□□□□ -1.05
HLA-DQB1-209ENST00000487676 VWFP04275 2813 aa8.47□□□□□ -1.05
HLA-DQB1-209ENST00000487676 KRTAP10-2P60368 255 aa8.45□□□□□ -1.06
HLA-DQB1-209ENST00000487676 S4R3F8 94 aa8.45□□□□□ -1.06
HLA-DQB1-209ENST00000487676 PDZD2O15018 2839 aa8.43□□□□□ -1.06
HLA-DQB1-209ENST00000487676 KRTAP10-1P60331 282 aa8.42□□□□□ -1.06
HLA-DQB1-209ENST00000487676 BSNQ9UPA5 3926 aa8.42□□□□□ -1.06
HLA-DQB1-209ENST00000487676 TENM4Q6N022 2769 aa8.39□□□□□ -1.07
HLA-DQB1-209ENST00000487676 TENM1Q9UKZ4 2725 aa8.38□□□□□ -1.07
HLA-DQB1-209ENST00000487676 RPS29P62273 56 aaKnown RBP8.38□□□□□ -1.07
HLA-DQB1-209ENST00000487676 TGP01266 2768 aa8.36□□□□□ -1.07
HLA-DQB1-209ENST00000487676 ZFHX3Q15911 3703 aa8.35□□□□□ -1.07
HLA-DQB1-209ENST00000487676 PKD1L1Q8TDX9 2849 aa8.34□□□□□ -1.07
HLA-DQB1-209ENST00000487676 A0A0A0MQY5 61 aa8.33□□□□□ -1.08
HLA-DQB1-209ENST00000487676 C20orf166-AS1Q96NR2 134 aa8.31□□□□□ -1.08
HLA-DQB1-209ENST00000487676 SRRM2Q9UQ35 2752 aaKnown RBP8.26□□□□□ -1.09
HLA-DQB1-209ENST00000487676 KRTAP1-4P0C5Y4 121 aa8.2□□□□□ -1.1
HLA-DQB1-209ENST00000487676 C10orf95Q9H7T3 257 aa8.2□□□□□ -1.1
HLA-DQB1-209ENST00000487676 CSMD2Q7Z408 3487 aa8.18□□□□□ -1.1
HLA-DQB1-209ENST00000487676 R4GN34 69 aa8.16□□□□□ -1.1
HLA-DQB1-209ENST00000487676 CAMK2N1Q7Z7J9 78 aa8.12□□□□□ -1.11
HLA-DQB1-209ENST00000487676 M0QZ58 72 aa8.11□□□□□ -1.11
HLA-DQB1-209ENST00000487676 VPS13CQ709C8 3753 aa8.05□□□□□ -1.12
HLA-DQB1-209ENST00000487676 FBN1P35555 2871 aaKnown RBP8.04□□□□□ -1.12
HLA-DQB1-209ENST00000487676 P0C880 135 aa8.04□□□□□ -1.12
HLA-DQB1-209ENST00000487676 OTOGQ6ZRI0 2925 aa7.99□□□□□ -1.13
HLA-DQB1-209ENST00000487676 ANK3Q12955 4377 aaKnown RBP7.98□□□□□ -1.13
HLA-DQB1-209ENST00000487676 M0R2T5 61 aa7.98□□□□□ -1.13
HLA-DQB1-209ENST00000487676 TPRXLQ17RH7 258 aa7.97□□□□□ -1.13
HLA-DQB1-209ENST00000487676 TENM2Q9NT68 2774 aa7.95□□□□□ -1.14
HLA-DQB1-209ENST00000487676 KRTAP3-1Q9BYR8 98 aa7.94□□□□□ -1.14
HLA-DQB1-209ENST00000487676 PLAC4Q8WY50 150 aa7.91□□□□□ -1.14
HLA-DQB1-209ENST00000487676 TRRAPQ9Y4A5 3859 aa7.91□□□□□ -1.14
HLA-DQB1-209ENST00000487676 NBPF19A0A087WUL8 3843 aa7.9□□□□□ -1.14
HLA-DQB1-209ENST00000487676 Q5VSD8 79 aa7.88□□□□□ -1.15
HLA-DQB1-209ENST00000487676 FBN3Q75N90 2809 aa7.87□□□□□ -1.15
HLA-DQB1-209ENST00000487676 SEC61BP60468 96 aaKnown RBP7.8□□□□□ -1.16
HLA-DQB1-209ENST00000487676 KRTAP12-2P59991 146 aa7.78□□□□□ -1.16
HLA-DQB1-209ENST00000487676 AKAP9Q99996 3911 aa7.76□□□□□ -1.17
HLA-DQB1-209ENST00000487676 KRTAP10-6P60371 365 aaPredicted RBP7.75□□□□□ -1.17
HLA-DQB1-209ENST00000487676 COL7A1Q02388 2944 aa7.75□□□□□ -1.17
HLA-DQB1-209ENST00000487676 KRTAP15-1Q3LI76 137 aa7.74□□□□□ -1.17
HLA-DQB1-209ENST00000487676 KRTAP13-4Q3LI77 160 aa7.74□□□□□ -1.17
HLA-DQB1-209ENST00000487676 PP632Q6XCG6 107 aa7.74□□□□□ -1.17
HLA-DQB1-209ENST00000487676 MEGF8Q7Z7M0 2845 aa7.71□□□□□ -1.17
HLA-DQB1-209ENST00000487676 XP32Q5T750 250 aa7.71□□□□□ -1.18
HLA-DQB1-209ENST00000487676 KRTAP12-1P59990 96 aa7.7□□□□□ -1.18
HLA-DQB1-209ENST00000487676 KRTAP10-8P60410 259 aa7.64□□□□□ -1.19
HLA-DQB1-209ENST00000487676 ZNF469Q96JG9 3925 aaPredicted RBP7.64□□□□□ -1.19
HLA-DQB1-209ENST00000487676 KRTAP21-3Q3LHN1 58 aa7.61□□□□□ -1.19
HLA-DQB1-209ENST00000487676 KRTAP3-2Q9BYR7 98 aa7.55□□□□□ -1.2
HLA-DQB1-209ENST00000487676 TNP1P09430 55 aa7.54□□□□□ -1.2
HLA-DQB1-209ENST00000487676 CSMD3Q7Z407 3707 aa7.5□□□□□ -1.21
HLA-DQB1-209ENST00000487676 KRTAP3-3Q9BYR6 98 aa7.49□□□□□ -1.21
HLA-DQB1-209ENST00000487676 HUWE1Q7Z6Z7 4374 aaKnown RBP7.48□□□□□ -1.21
HLA-DQB1-209ENST00000487676 ALMS1Q8TCU4 4167 aa7.46□□□□□ -1.21
HLA-DQB1-209ENST00000487676 DNAH10Q8IVF4 4471 aa7.33□□□□□ -1.24
HLA-DQB1-209ENST00000487676 A0A1B0GVY2 172 aa7.21□□□□□ -1.25
HLA-DQB1-209ENST00000487676 DNAH8Q96JB1 4490 aa7.16□□□□□ -1.26
HLA-DQB1-209ENST00000487676 DNAH1Q9P2D7 4330 aa7.16□□□□□ -1.26
HLA-DQB1-209ENST00000487676 PLECQ15149 4684 aaKnown RBP7.11□□□□□ -1.27
HLA-DQB1-209ENST00000487676 DNAH9Q9NYC9 4486 aa7.1□□□□□ -1.27
HLA-DQB1-209ENST00000487676 DNAH17Q9UFH2 4485 aa7.07□□□□□ -1.28
HLA-DQB1-209ENST00000487676 KRTAP10-4P60372 401 aaPredicted RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms