RNA–Protein interactions for RNA: ENST00000486810.5

COPS3-209, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 3

Gene COPS3, Length 938 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-209ENST00000486810 COL12A1Q99715 3063 aa2.53□□□□□ -2.01
COPS3-209ENST00000486810 SPG11Q96JI7 2443 aa2.52□□□□□ -2.01
COPS3-209ENST00000486810 DCHS1Q96JQ0 3298 aa2.52□□□□□ -2.01
COPS3-209ENST00000486810 SRRM2Q9UQ35 2752 aaKnown RBP2.52□□□□□ -2.01
COPS3-209ENST00000486810 A0A096LNI7 61 aa2.52□□□□□ -2.01
COPS3-209ENST00000486810 NCOR2Q9Y618 2525 aa2.52□□□□□ -2.01
COPS3-209ENST00000486810 LAMA1P25391 3075 aa2.52□□□□□ -2.01
COPS3-209ENST00000486810 CRYBG3Q68DQ2 2970 aa2.52□□□□□ -2.01
COPS3-209ENST00000486810 KRTAP12-1P59990 96 aa2.51□□□□□ -2.01
COPS3-209ENST00000486810 KRTAP13-4Q3LI77 160 aa2.51□□□□□ -2.01
COPS3-209ENST00000486810 DEFB124Q8NES8 71 aa2.5□□□□□ -2.01
COPS3-209ENST00000486810 CELSR1Q9NYQ6 3014 aa2.5□□□□□ -2.01
COPS3-209ENST00000486810 TACC2O95359 2948 aa2.49□□□□□ -2.01
COPS3-209ENST00000486810 PRRC2CQ9Y520 2896 aaKnown RBP2.49□□□□□ -2.01
COPS3-209ENST00000486810 VPS13DQ5THJ4 4388 aa2.49□□□□□ -2.01
COPS3-209ENST00000486810 A0A0D9SG42 100 aa2.49□□□□□ -2.01
COPS3-209ENST00000486810 SPART-AS1P0CW21 52 aa2.48□□□□□ -2.01
COPS3-209ENST00000486810 DNAH14Q0VDD8 3507 aa2.48□□□□□ -2.01
COPS3-209ENST00000486810 NF1P21359 2839 aa2.47□□□□□ -2.01
COPS3-209ENST00000486810 MUC6Q6W4X9 2439 aa2.47□□□□□ -2.01
COPS3-209ENST00000486810 ABCA2Q9BZC7 2435 aa2.47□□□□□ -2.01
COPS3-209ENST00000486810 SPINK6Q6UWN8 80 aa2.47□□□□□ -2.01
COPS3-209ENST00000486810 CELSR3Q9NYQ7 3312 aa2.47□□□□□ -2.01
COPS3-209ENST00000486810 EP400Q96L91 3159 aa2.46□□□□□ -2.02
COPS3-209ENST00000486810 AKAP9Q99996 3911 aa2.46□□□□□ -2.02
COPS3-209ENST00000486810 DMXL2Q8TDJ6 3036 aa2.46□□□□□ -2.02
COPS3-209ENST00000486810 COL6A5A8TX70 2615 aa2.45□□□□□ -2.02
COPS3-209ENST00000486810 Q5VSD8 79 aa2.45□□□□□ -2.02
COPS3-209ENST00000486810 CCDC168Q8NDH2 2452 aa2.45□□□□□ -2.02
COPS3-209ENST00000486810 JMJD1CQ15652 2540 aa2.44□□□□□ -2.02
COPS3-209ENST00000486810 ANKHD1Q8IWZ3 2542 aaKnown RBP2.44□□□□□ -2.02
COPS3-209ENST00000486810 ATMQ13315 3056 aa2.44□□□□□ -2.02
COPS3-209ENST00000486810 RIF1Q5UIP0 2472 aaKnown RBP2.44□□□□□ -2.02
COPS3-209ENST00000486810 FREM2Q5SZK8 3169 aa2.44□□□□□ -2.02
COPS3-209ENST00000486810 NBPF19A0A087WUL8 3843 aa2.44□□□□□ -2.02
COPS3-209ENST00000486810 M0QZ58 72 aa2.44□□□□□ -2.02
COPS3-209ENST00000486810 CREBBPQ92793 2442 aa2.44□□□□□ -2.02
COPS3-209ENST00000486810 APCP25054 2843 aa2.44□□□□□ -2.02
COPS3-209ENST00000486810 MEGF8Q7Z7M0 2845 aa2.44□□□□□ -2.02
COPS3-209ENST00000486810 ZFHX4Q86UP3 3567 aa2.44□□□□□ -2.02
COPS3-209ENST00000486810 BAHCC1Q9P281 2608 aa2.43□□□□□ -2.02
COPS3-209ENST00000486810 NBASA2RRP1 2371 aa2.43□□□□□ -2.02
COPS3-209ENST00000486810 F8P00451 2351 aa2.41□□□□□ -2.02
COPS3-209ENST00000486810 HIVEP3Q5T1R4 2406 aa2.4□□□□□ -2.02
COPS3-209ENST00000486810 NAV2Q8IVL1 2488 aa2.4□□□□□ -2.03
COPS3-209ENST00000486810 KRTAP13-2Q52LG2 175 aa2.4□□□□□ -2.03
COPS3-209ENST00000486810 SPENQ96T58 3664 aaKnown RBP2.39□□□□□ -2.03
COPS3-209ENST00000486810 CSMD1Q96PZ7 3565 aa2.39□□□□□ -2.03
COPS3-209ENST00000486810 LOC400499M0QZD8 3231 aa2.39□□□□□ -2.03
COPS3-209ENST00000486810 LAMA5O15230 3695 aa2.39□□□□□ -2.03
COPS3-209ENST00000486810 WDFY3Q8IZQ1 3526 aa2.38□□□□□ -2.03
COPS3-209ENST00000486810 HTN3P15516 51 aa2.37□□□□□ -2.03
COPS3-209ENST00000486810 TEX15Q9BXT5 2789 aa2.36□□□□□ -2.03
COPS3-209ENST00000486810 SONP18583 2426 aaKnown RBP2.36□□□□□ -2.03
COPS3-209ENST00000486810 LAMA3Q16787 3333 aa2.36□□□□□ -2.03
COPS3-209ENST00000486810 DCHS2Q6V1P9 2916 aa2.36□□□□□ -2.03
COPS3-209ENST00000486810 RELNP78509 3460 aa2.35□□□□□ -2.03
COPS3-209ENST00000486810 CEP290O15078 2479 aa2.35□□□□□ -2.03
COPS3-209ENST00000486810 DMBT1Q9UGM3 2413 aaPredicted RBP2.34□□□□□ -2.03
COPS3-209ENST00000486810 PKD1L2Q7Z442 2459 aa2.34□□□□□ -2.04
COPS3-209ENST00000486810 VCANP13611 3396 aa2.33□□□□□ -2.04
COPS3-209ENST00000486810 SPTAN1Q13813 2472 aaKnown RBP2.33□□□□□ -2.04
COPS3-209ENST00000486810 PTPN13Q12923 2485 aa2.33□□□□□ -2.04
COPS3-209ENST00000486810 SETD2Q9BYW2 2564 aaPredicted RBP2.33□□□□□ -2.04
COPS3-209ENST00000486810 TLN1Q9Y490 2541 aaKnown RBP2.32□□□□□ -2.04
COPS3-209ENST00000486810 DEFB4AO15263 64 aa2.32□□□□□ -2.04
COPS3-209ENST00000486810 DNAH11Q96DT5 4516 aa2.32□□□□□ -2.04
COPS3-209ENST00000486810 UTP20O75691 2785 aaKnown RBP2.32□□□□□ -2.04
COPS3-209ENST00000486810 DEFB135Q30KP9 77 aa2.31□□□□□ -2.04
COPS3-209ENST00000486810 FRAS1Q86XX4 4008 aa2.3□□□□□ -2.04
COPS3-209ENST00000486810 TTC28Q96AY4 2481 aa2.3□□□□□ -2.04
COPS3-209ENST00000486810 NIPBLQ6KC79 2804 aaeCLIP2.28□□□□□ -2.04
COPS3-209ENST00000486810 BRCA2P51587 3418 aa2.28□□□□□ -2.04
COPS3-209ENST00000486810 CDH23Q9H251 3354 aa2.28□□□□□ -2.04
COPS3-209ENST00000486810 ITPR3Q14573 2671 aa2.28□□□□□ -2.04
COPS3-209ENST00000486810 BSNQ9UPA5 3926 aa2.28□□□□□ -2.04
COPS3-209ENST00000486810 ABCA12Q86UK0 2595 aa2.27□□□□□ -2.05
COPS3-209ENST00000486810 USP9XQ93008 2570 aaPredicted RBP2.27□□□□□ -2.05
COPS3-209ENST00000486810 KRTAP5-8O75690 187 aa2.27□□□□□ -2.05
COPS3-209ENST00000486810 SMG1Q96Q15 3661 aaKnown RBP2.27□□□□□ -2.05
COPS3-209ENST00000486810 DNAH1Q9P2D7 4330 aa2.26□□□□□ -2.05
COPS3-209ENST00000486810 KRTAP5-7Q6L8G8 165 aa2.26□□□□□ -2.05
COPS3-209ENST00000486810 TLN2Q9Y4G6 2542 aa2.26□□□□□ -2.05
COPS3-209ENST00000486810 SETXQ7Z333 2677 aaKnown RBP2.25□□□□□ -2.05
COPS3-209ENST00000486810 ASPMQ8IZT6 3477 aa2.25□□□□□ -2.05
COPS3-209ENST00000486810 RPS29P62273 56 aaKnown RBP2.25□□□□□ -2.05
COPS3-209ENST00000486810 ADGRG4Q8IZF6 3080 aa2.25□□□□□ -2.05
COPS3-209ENST00000486810 CENPEQ02224 2701 aa2.25□□□□□ -2.05
COPS3-209ENST00000486810 DNAH8Q96JB1 4490 aa2.25□□□□□ -2.05
COPS3-209ENST00000486810 LRRK2Q5S007 2527 aa2.24□□□□□ -2.05
COPS3-209ENST00000486810 PDZD2O15018 2839 aa2.24□□□□□ -2.05
COPS3-209ENST00000486810 COL7A1Q02388 2944 aa2.23□□□□□ -2.05
COPS3-209ENST00000486810 MYCBP2O75592 4640 aa2.23□□□□□ -2.05
COPS3-209ENST00000486810 CFAP46Q8IYW2 2715 aa2.23□□□□□ -2.05
COPS3-209ENST00000486810 HELZ2Q9BYK8 2649 aaKnown RBP2.22□□□□□ -2.05
COPS3-209ENST00000486810 DOPEY1Q5JWR5 2465 aa2.22□□□□□ -2.05
COPS3-209ENST00000486810 TENM4Q6N022 2769 aa2.21□□□□□ -2.05
COPS3-209ENST00000486810 USP9YO00507 2555 aaPredicted RBP2.21□□□□□ -2.06
COPS3-209ENST00000486810 MUC3AQ02505 3323 aa2.21□□□□□ -2.06
COPS3-209ENST00000486810 CHD8Q9HCK8 2581 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms