RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 KRTAP29-1A8MX34 341 aaPredicted RBP6.65□□□□□ -1.34
HDAC6-228ENST00000486227 PRAC1Q96KF2 57 aa6.62□□□□□ -1.35
HDAC6-228ENST00000486227 CELSR1Q9NYQ6 3014 aa6.61□□□□□ -1.35
HDAC6-228ENST00000486227 FLG2Q5D862 2391 aaPredicted RBP6.61□□□□□ -1.35
HDAC6-228ENST00000486227 SMG1Q96Q15 3661 aaKnown RBP6.6□□□□□ -1.35
HDAC6-228ENST00000486227 KRTAP7-1Q8IUC3 87 aa6.59□□□□□ -1.35
HDAC6-228ENST00000486227 Q6ZRN7 208 aaPredicted RBP6.59□□□□□ -1.35
HDAC6-228ENST00000486227 KRTAP11-1Q8IUC1 163 aa6.58□□□□□ -1.36
HDAC6-228ENST00000486227 Q8N1X5 172 aa6.58□□□□□ -1.36
HDAC6-228ENST00000486227 TENM1Q9UKZ4 2725 aa6.58□□□□□ -1.36
HDAC6-228ENST00000486227 PDZD2O15018 2839 aa6.57□□□□□ -1.36
HDAC6-228ENST00000486227 TENM3Q9P273 2699 aa6.57□□□□□ -1.36
HDAC6-228ENST00000486227 SPINT4Q6UDR6 99 aa6.57□□□□□ -1.36
HDAC6-228ENST00000486227 M0R2T5 61 aa6.56□□□□□ -1.36
HDAC6-228ENST00000486227 A6NN06 94 aa6.55□□□□□ -1.36
HDAC6-228ENST00000486227 LINC00483Q53H64 154 aa6.53□□□□□ -1.36
HDAC6-228ENST00000486227 CSMD1Q96PZ7 3565 aa6.53□□□□□ -1.36
HDAC6-228ENST00000486227 SEC61BP60468 96 aaKnown RBP6.52□□□□□ -1.36
HDAC6-228ENST00000486227 H3BS24 57 aa6.52□□□□□ -1.37
HDAC6-228ENST00000486227 OTOGQ6ZRI0 2925 aa6.52□□□□□ -1.37
HDAC6-228ENST00000486227 ASB16-AS1Q495Z4 193 aa6.51□□□□□ -1.37
HDAC6-228ENST00000486227 A8MU10 97 aa6.49□□□□□ -1.37
HDAC6-228ENST00000486227 Q5W150 140 aa6.49□□□□□ -1.37
HDAC6-228ENST00000486227 VWFP04275 2813 aa6.49□□□□□ -1.37
HDAC6-228ENST00000486227 FBN1P35555 2871 aaKnown RBP6.49□□□□□ -1.37
HDAC6-228ENST00000486227 DMAC1Q96GE9 116 aa6.48□□□□□ -1.37
HDAC6-228ENST00000486227 A0A087X002 238 aa6.48□□□□□ -1.37
HDAC6-228ENST00000486227 CSAG1Q6PB30 78 aa6.48□□□□□ -1.37
HDAC6-228ENST00000486227 SVEP1Q4LDE5 3571 aa6.45□□□□□ -1.38
HDAC6-228ENST00000486227 NBPF19A0A087WUL8 3843 aa6.44□□□□□ -1.38
HDAC6-228ENST00000486227 A0A1B0GU33 70 aa6.44□□□□□ -1.38
HDAC6-228ENST00000486227 CRIPTQ9P021 101 aa6.43□□□□□ -1.38
HDAC6-228ENST00000486227 PKD1L1Q8TDX9 2849 aa6.42□□□□□ -1.38
HDAC6-228ENST00000486227 SPATA8Q6RVD6 105 aa6.41□□□□□ -1.38
HDAC6-228ENST00000486227 KRTAP13-1Q8IUC0 172 aa6.4□□□□□ -1.38
HDAC6-228ENST00000486227 NOTCH2NLQ7Z3S9 236 aa6.39□□□□□ -1.39
HDAC6-228ENST00000486227 ZFHX3Q15911 3703 aa6.38□□□□□ -1.39
HDAC6-228ENST00000486227 SPENQ96T58 3664 aaKnown RBP6.38□□□□□ -1.39
HDAC6-228ENST00000486227 TENM2Q9NT68 2774 aa6.36□□□□□ -1.39
HDAC6-228ENST00000486227 A0A0D9SG42 100 aa6.35□□□□□ -1.39
HDAC6-228ENST00000486227 CSMD2Q7Z408 3487 aa6.35□□□□□ -1.39
HDAC6-228ENST00000486227 CUBNO60494 3623 aa6.33□□□□□ -1.4
HDAC6-228ENST00000486227 KRTAP13-2Q52LG2 175 aa6.33□□□□□ -1.4
HDAC6-228ENST00000486227 S4R3F8 94 aa6.32□□□□□ -1.4
HDAC6-228ENST00000486227 TGP01266 2768 aa6.31□□□□□ -1.4
HDAC6-228ENST00000486227 ADM2Q7Z4H4 148 aa6.29□□□□□ -1.4
HDAC6-228ENST00000486227 CAMK2N1Q7Z7J9 78 aa6.29□□□□□ -1.4
HDAC6-228ENST00000486227 BSNQ9UPA5 3926 aa6.28□□□□□ -1.4
HDAC6-228ENST00000486227 RPS29P62273 56 aaKnown RBP6.26□□□□□ -1.41
HDAC6-228ENST00000486227 H1FX-AS1Q4G0G2 97 aa6.22□□□□□ -1.41
HDAC6-228ENST00000486227 R4GN34 69 aa6.21□□□□□ -1.42
HDAC6-228ENST00000486227 ROMO1P60602 79 aa6.19□□□□□ -1.42
HDAC6-228ENST00000486227 KRTAP25-1Q3LHN0 102 aa6.19□□□□□ -1.42
HDAC6-228ENST00000486227 RPL37P61927 97 aaKnown RBP6.17□□□□□ -1.42
HDAC6-228ENST00000486227 ANK3Q12955 4377 aaKnown RBP6.16□□□□□ -1.42
HDAC6-228ENST00000486227 TRRAPQ9Y4A5 3859 aa6.13□□□□□ -1.43
HDAC6-228ENST00000486227 KRTAP1-4P0C5Y4 121 aa6.12□□□□□ -1.43
HDAC6-228ENST00000486227 LUZP6Q538Z0 58 aa6.07□□□□□ -1.44
HDAC6-228ENST00000486227 M0QZ58 72 aa6.07□□□□□ -1.44
HDAC6-228ENST00000486227 SRRM2Q9UQ35 2752 aaKnown RBP6.01□□□□□ -1.45
HDAC6-228ENST00000486227 PLAC4Q8WY50 150 aa6□□□□□ -1.45
HDAC6-228ENST00000486227 A8MUU9 505 aa5.99□□□□□ -1.45
HDAC6-228ENST00000486227 FBN3Q75N90 2809 aa5.98□□□□□ -1.45
HDAC6-228ENST00000486227 C20orf166-AS1Q96NR2 134 aa5.98□□□□□ -1.45
HDAC6-228ENST00000486227 KRTAP13-3Q3SY46 172 aa5.93□□□□□ -1.46
HDAC6-228ENST00000486227 A0A0A0MQY5 61 aa5.92□□□□□ -1.46
HDAC6-228ENST00000486227 KRTAP16-1A8MUX0 517 aa5.92□□□□□ -1.46
HDAC6-228ENST00000486227 VPS13CQ709C8 3753 aa5.92□□□□□ -1.46
HDAC6-228ENST00000486227 H0YAA0 97 aa5.9□□□□□ -1.46
HDAC6-228ENST00000486227 NDUFAF8A1L188 74 aa5.89□□□□□ -1.47
HDAC6-228ENST00000486227 A0A1B0GVY2 172 aa5.88□□□□□ -1.47
HDAC6-228ENST00000486227 MEGF8Q7Z7M0 2845 aa5.88□□□□□ -1.47
HDAC6-228ENST00000486227 XP32Q5T750 250 aa5.88□□□□□ -1.47
HDAC6-228ENST00000486227 TPRXLQ17RH7 258 aa5.87□□□□□ -1.47
HDAC6-228ENST00000486227 ZNF469Q96JG9 3925 aaPredicted RBP5.85□□□□□ -1.47
HDAC6-228ENST00000486227 COL7A1Q02388 2944 aa5.81□□□□□ -1.48
HDAC6-228ENST00000486227 KRTAP10-8P60410 259 aa5.76□□□□□ -1.49
HDAC6-228ENST00000486227 C10orf95Q9H7T3 257 aa5.71□□□□□ -1.5
HDAC6-228ENST00000486227 HUWE1Q7Z6Z7 4374 aaKnown RBP5.68□□□□□ -1.5
HDAC6-228ENST00000486227 AKAP9Q99996 3911 aa5.68□□□□□ -1.5
HDAC6-228ENST00000486227 KRTAP10-10P60014 251 aa5.62□□□□□ -1.51
HDAC6-228ENST00000486227 P0C880 135 aa5.61□□□□□ -1.51
HDAC6-228ENST00000486227 TNP1P09430 55 aa5.58□□□□□ -1.52
HDAC6-228ENST00000486227 CSMD3Q7Z407 3707 aa5.55□□□□□ -1.52
HDAC6-228ENST00000486227 PP632Q6XCG6 107 aa5.5□□□□□ -1.53
HDAC6-228ENST00000486227 DNAH9Q9NYC9 4486 aa5.5□□□□□ -1.53
HDAC6-228ENST00000486227 KRTAP3-1Q9BYR8 98 aa5.49□□□□□ -1.53
HDAC6-228ENST00000486227 PRO2289Q9P1D8 64 aa5.46□□□□□ -1.54
HDAC6-228ENST00000486227 KRTAP10-4P60372 401 aaPredicted RBP5.43□□□□□ -1.54
HDAC6-228ENST00000486227 DNHD1Q96M86 4753 aa5.43□□□□□ -1.54
HDAC6-228ENST00000486227 MT1HL1P0DM35 61 aa5.42□□□□□ -1.54
HDAC6-228ENST00000486227 KRTAP12-2P59991 146 aa5.42□□□□□ -1.54
HDAC6-228ENST00000486227 PLECQ15149 4684 aaKnown RBP5.39□□□□□ -1.55
HDAC6-228ENST00000486227 KRTAP12-1P59990 96 aa5.37□□□□□ -1.55
HDAC6-228ENST00000486227 KRTAP10-6P60371 365 aaPredicted RBP5.36□□□□□ -1.55
HDAC6-228ENST00000486227 KRTAP13-4Q3LI77 160 aa5.35□□□□□ -1.55
HDAC6-228ENST00000486227 KRTAP4-5Q9BYR2 181 aa5.33□□□□□ -1.56
HDAC6-228ENST00000486227 DNAH1Q9P2D7 4330 aa5.32□□□□□ -1.56
HDAC6-228ENST00000486227 DNAH5Q8TE73 4624 aa5.32□□□□□ -1.56
HDAC6-228ENST00000486227 DNAH11Q96DT5 4516 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms