RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 K7ERU9 68 aa4.73□□□□□ -1.65
USP4-210ENST00000483212 RPS29P62273 56 aaKnown RBP4.73□□□□□ -1.65
USP4-210ENST00000483212 Q5XG85 94 aa4.73□□□□□ -1.65
USP4-210ENST00000483212 SPINK1P00995 79 aa4.72□□□□□ -1.65
USP4-210ENST00000483212 SPAG11AQ6PDA7 123 aa4.72□□□□□ -1.65
USP4-210ENST00000483212 CDIP1Q9H305 208 aa4.72□□□□□ -1.65
USP4-210ENST00000483212 ASB16-AS1Q495Z4 193 aa4.71□□□□□ -1.66
USP4-210ENST00000483212 Q6ZVQ6 151 aa4.71□□□□□ -1.66
USP4-210ENST00000483212 Q96NJ1 140 aa4.71□□□□□ -1.66
USP4-210ENST00000483212 LINC00472Q9H8W2 130 aa4.7□□□□□ -1.66
USP4-210ENST00000483212 SS18L2Q9UHA2 77 aa4.69□□□□□ -1.66
USP4-210ENST00000483212 NREPQ16612 68 aa4.68□□□□□ -1.66
USP4-210ENST00000483212 LIMD2Q9BT23 127 aa4.68□□□□□ -1.66
USP4-210ENST00000483212 UBL5Q9BZL1 73 aa4.68□□□□□ -1.66
USP4-210ENST00000483212 C1orf195Q5TG92 126 aa4.67□□□□□ -1.66
USP4-210ENST00000483212 LINC00643Q86TS7 51 aa4.66□□□□□ -1.66
USP4-210ENST00000483212 HERC1Q15751 4861 aa4.66□□□□□ -1.66
USP4-210ENST00000483212 DSCR10P59022 87 aa4.65□□□□□ -1.67
USP4-210ENST00000483212 DEFB116Q30KQ4 102 aa4.65□□□□□ -1.67
USP4-210ENST00000483212 HMCN2Q8NDA2 5059 aa4.64□□□□□ -1.67
USP4-210ENST00000483212 J3KT08 172 aa4.63□□□□□ -1.67
USP4-210ENST00000483212 BPY2O14599 106 aa4.63□□□□□ -1.67
USP4-210ENST00000483212 CXCL6P80162 114 aa4.63□□□□□ -1.67
USP4-210ENST00000483212 ATP5EP2Q5VTU8 51 aa4.63□□□□□ -1.67
USP4-210ENST00000483212 SIGMAR1Q99720 223 aa4.63□□□□□ -1.67
USP4-210ENST00000483212 DMBT1Q9UGM3 2413 aaPredicted RBP4.63□□□□□ -1.67
USP4-210ENST00000483212 IGKV3D-7A0A0C4DH55 119 aa4.62□□□□□ -1.67
USP4-210ENST00000483212 MT-ATP8P03928 68 aa4.62□□□□□ -1.67
USP4-210ENST00000483212 IGKV4-1P06312 121 aa4.62□□□□□ -1.67
USP4-210ENST00000483212 A8MWP4 228 aa4.61□□□□□ -1.67
USP4-210ENST00000483212 RETNLBQ9BQ08 111 aa4.61□□□□□ -1.67
USP4-210ENST00000483212 K7EQZ3 153 aa4.6□□□□□ -1.67
USP4-210ENST00000483212 Q8N9L7 120 aa4.6□□□□□ -1.67
USP4-210ENST00000483212 PRR15Q8IV56 129 aa4.59□□□□□ -1.67
USP4-210ENST00000483212 A0A1B0GVX0 72 aa4.58□□□□□ -1.68
USP4-210ENST00000483212 FP248Q71RG6 208 aaPredicted RBP4.58□□□□□ -1.68
USP4-210ENST00000483212 NOTCH2NLQ7Z3S9 236 aa4.57□□□□□ -1.68
USP4-210ENST00000483212 A0A087WVE0 104 aa4.56□□□□□ -1.68
USP4-210ENST00000483212 MMP24-AS1A0A0U1RRL7 71 aa4.56□□□□□ -1.68
USP4-210ENST00000483212 IMUPQ9GZP8 106 aa4.56□□□□□ -1.68
USP4-210ENST00000483212 IGHV6-1A0A0B4J1U7 121 aa4.55□□□□□ -1.68
USP4-210ENST00000483212 KRTAP16-1A8MUX0 517 aa4.55□□□□□ -1.68
USP4-210ENST00000483212 NDUFB1O75438 58 aa4.55□□□□□ -1.68
USP4-210ENST00000483212 C8orf17Q9NRJ1 99 aa4.55□□□□□ -1.68
USP4-210ENST00000483212 IGLV7-46A0A075B6I9 117 aa4.54□□□□□ -1.68
USP4-210ENST00000483212 C8orf87E5RJ46 101 aa4.54□□□□□ -1.68
USP4-210ENST00000483212 HIST1H4AP62805 103 aaKnown RBP4.54□□□□□ -1.68
USP4-210ENST00000483212 KRTAP13-3Q3SY46 172 aa4.53□□□□□ -1.68
USP4-210ENST00000483212 LPAP08519 4548 aa4.53□□□□□ -1.68
USP4-210ENST00000483212 HCG22E2RYF7 251 aa4.52□□□□□ -1.69
USP4-210ENST00000483212 PRR4Q16378 134 aa4.52□□□□□ -1.69
USP4-210ENST00000483212 LINC00313P59037 77 aa4.51□□□□□ -1.69
USP4-210ENST00000483212 LRP2P98164 4655 aa4.51□□□□□ -1.69
USP4-210ENST00000483212 C9orf92A6NGG3 77 aa4.5□□□□□ -1.69
USP4-210ENST00000483212 TPRXLQ17RH7 258 aa4.5□□□□□ -1.69
USP4-210ENST00000483212 WFDC13Q8IUB5 93 aa4.5□□□□□ -1.69
USP4-210ENST00000483212 hDV103S1A0JD37 113 aa4.49□□□□□ -1.69
USP4-210ENST00000483212 CASC2Q6XLA1 102 aa4.49□□□□□ -1.69
USP4-210ENST00000483212 SVIPQ8NHG7 77 aa4.49□□□□□ -1.69
USP4-210ENST00000483212 TMEM254Q8TBM7 123 aa4.49□□□□□ -1.69
USP4-210ENST00000483212 Q8N9P0 234 aaPredicted RBP4.48□□□□□ -1.69
USP4-210ENST00000483212 MRPL34Q9BQ48 92 aaKnown RBP4.48□□□□□ -1.69
USP4-210ENST00000483212 FAM236AA0A1B0GUQ0 79 aa4.47□□□□□ -1.69
USP4-210ENST00000483212 FAM236BA0A1B0GV22 79 aa4.47□□□□□ -1.69
USP4-210ENST00000483212 C20orf166-AS1Q96NR2 134 aa4.47□□□□□ -1.69
USP4-210ENST00000483212 A8MUU9 505 aa4.46□□□□□ -1.7
USP4-210ENST00000483212 MUC17Q685J3 4493 aa4.44□□□□□ -1.7
USP4-210ENST00000483212 SCGB1A1P11684 91 aa4.43□□□□□ -1.7
USP4-210ENST00000483212 Q75L30 129 aa4.43□□□□□ -1.7
USP4-210ENST00000483212 OCR1Q9BZK8 76 aa4.43□□□□□ -1.7
USP4-210ENST00000483212 RPL37P61927 97 aaKnown RBP4.42□□□□□ -1.7
USP4-210ENST00000483212 ATOX1O00244 68 aa4.41□□□□□ -1.7
USP4-210ENST00000483212 UBR4Q5T4S7 5183 aa4.4□□□□□ -1.71
USP4-210ENST00000483212 Q5W150 140 aa4.4□□□□□ -1.71
USP4-210ENST00000483212 NDUFS5O43920 106 aa4.39□□□□□ -1.71
USP4-210ENST00000483212 KRTAP19-4Q3LI73 84 aa4.39□□□□□ -1.71
USP4-210ENST00000483212 TP53AIP1Q9HCN2 124 aa4.39□□□□□ -1.71
USP4-210ENST00000483212 TRAV7A0A075B6U4 112 aa4.38□□□□□ -1.71
USP4-210ENST00000483212 UQCRQO14949 82 aa4.38□□□□□ -1.71
USP4-210ENST00000483212 ZCCHC13Q8WW36 166 aaKnown RBP4.38□□□□□ -1.71
USP4-210ENST00000483212 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.37□□□□□ -1.71
USP4-210ENST00000483212 SMIM20Q8N5G0 67 aa4.37□□□□□ -1.71
USP4-210ENST00000483212 SERP2Q8N6R1 65 aa4.36□□□□□ -1.71
USP4-210ENST00000483212 TRAV22A0A0B4J277 110 aa4.35□□□□□ -1.71
USP4-210ENST00000483212 RNF213Q63HN8 5207 aa4.34□□□□□ -1.71
USP4-210ENST00000483212 PCOTHQ58A44 107 aa4.34□□□□□ -1.71
USP4-210ENST00000483212 H0Y9P7 68 aa4.33□□□□□ -1.72
USP4-210ENST00000483212 H3BS24 57 aa4.33□□□□□ -1.72
USP4-210ENST00000483212 C5orf47Q569G3 176 aa4.33□□□□□ -1.72
USP4-210ENST00000483212 ATP11AUNQ6ZP68 121 aa4.33□□□□□ -1.72
USP4-210ENST00000483212 ANAPC13Q9BS18 74 aa4.33□□□□□ -1.72
USP4-210ENST00000483212 COX7CP15954 63 aa4.32□□□□□ -1.72
USP4-210ENST00000483212 A0A0U1RQV1 116 aa4.31□□□□□ -1.72
USP4-210ENST00000483212 IGKV2-30P06310 120 aa4.31□□□□□ -1.72
USP4-210ENST00000483212 SEC61BP60468 96 aaKnown RBP4.31□□□□□ -1.72
USP4-210ENST00000483212 KRTAP4-1Q9BYQ7 146 aa4.3□□□□□ -1.72
USP4-210ENST00000483212 H3BPC8 53 aa4.29□□□□□ -1.72
USP4-210ENST00000483212 MP68P56378 58 aa4.29□□□□□ -1.72
USP4-210ENST00000483212 LOC101927531A0A1B0GV80 90 aa4.28□□□□□ -1.72
USP4-210ENST00000483212 SPINK7P58062 85 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms