RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 MPLKIPQ8TAP9 179 aa8.61□□□□□ -1.03
CHD3-211ENST00000481999 ZNF706Q9Y5V0 76 aaPredicted RBP8.61□□□□□ -1.03
CHD3-211ENST00000481999 H0Y9P7 68 aa8.61□□□□□ -1.03
CHD3-211ENST00000481999 LINC00336Q6ZUF6 198 aa8.61□□□□□ -1.03
CHD3-211ENST00000481999 FAT1Q14517 4588 aa8.61□□□□□ -1.03
CHD3-211ENST00000481999 MMP24-AS1A0A0U1RRL7 71 aa8.59□□□□□ -1.03
CHD3-211ENST00000481999 PRR4Q16378 134 aa8.56□□□□□ -1.04
CHD3-211ENST00000481999 Q96NJ1 140 aa8.56□□□□□ -1.04
CHD3-211ENST00000481999 V9GYY9 64 aa8.55□□□□□ -1.04
CHD3-211ENST00000481999 SPANXA2-OT1Q8N9U9 137 aa8.55□□□□□ -1.04
CHD3-211ENST00000481999 A0A087X002 238 aa8.54□□□□□ -1.04
CHD3-211ENST00000481999 EPPK1P58107 5090 aaKnown RBP8.53□□□□□ -1.04
CHD3-211ENST00000481999 APOBP04114 4563 aaKnown RBP8.53□□□□□ -1.04
CHD3-211ENST00000481999 SMR3BP02814 79 aaPredicted RBP8.52□□□□□ -1.04
CHD3-211ENST00000481999 ASB16-AS1Q495Z4 193 aa8.52□□□□□ -1.04
CHD3-211ENST00000481999 A0A1B0GVY2 172 aa8.52□□□□□ -1.05
CHD3-211ENST00000481999 Q1T7F1 81 aa8.52□□□□□ -1.05
CHD3-211ENST00000481999 TP53AIP1Q9HCN2 124 aa8.51□□□□□ -1.05
CHD3-211ENST00000481999 C8orf17Q9NRJ1 99 aa8.5□□□□□ -1.05
CHD3-211ENST00000481999 A0A1B0GVX0 72 aa8.48□□□□□ -1.05
CHD3-211ENST00000481999 BRK1Q8WUW1 75 aa8.48□□□□□ -1.05
CHD3-211ENST00000481999 CDK2AP2O75956 126 aa8.47□□□□□ -1.05
CHD3-211ENST00000481999 KRTAP13-2Q52LG2 175 aa8.47□□□□□ -1.05
CHD3-211ENST00000481999 IGHV6-1A0A0B4J1U7 121 aa8.46□□□□□ -1.06
CHD3-211ENST00000481999 C1orf195Q5TG92 126 aa8.46□□□□□ -1.06
CHD3-211ENST00000481999 KRTAP1-4P0C5Y4 121 aa8.44□□□□□ -1.06
CHD3-211ENST00000481999 SPINK6Q6UWN8 80 aa8.43□□□□□ -1.06
CHD3-211ENST00000481999 IGLV7-46A0A075B6I9 117 aa8.41□□□□□ -1.06
CHD3-211ENST00000481999 NDUFS5O43920 106 aa8.41□□□□□ -1.06
CHD3-211ENST00000481999 MRPL34Q9BQ48 92 aaKnown RBP8.41□□□□□ -1.06
CHD3-211ENST00000481999 NOTCH2NLQ7Z3S9 236 aa8.4□□□□□ -1.06
CHD3-211ENST00000481999 PSPHP1O15172 72 aa8.38□□□□□ -1.07
CHD3-211ENST00000481999 PLA2G1BP04054 148 aaKnown RBP8.37□□□□□ -1.07
CHD3-211ENST00000481999 CD164Q04900 197 aa8.37□□□□□ -1.07
CHD3-211ENST00000481999 BIRC6Q9NR09 4857 aa8.36□□□□□ -1.07
CHD3-211ENST00000481999 PCOTHQ58A44 107 aa8.36□□□□□ -1.07
CHD3-211ENST00000481999 SSBP3-AS1Q7Z2R9 100 aa8.35□□□□□ -1.07
CHD3-211ENST00000481999 COA5Q86WW8 74 aa8.34□□□□□ -1.07
CHD3-211ENST00000481999 Q8N9P0 234 aaPredicted RBP8.33□□□□□ -1.08
CHD3-211ENST00000481999 LIMD2Q9BT23 127 aa8.33□□□□□ -1.08
CHD3-211ENST00000481999 A8MUN3 132 aa8.32□□□□□ -1.08
CHD3-211ENST00000481999 PRR26Q8N8Z3 221 aa8.32□□□□□ -1.08
CHD3-211ENST00000481999 HSPG2P98160 4391 aa8.32□□□□□ -1.08
CHD3-211ENST00000481999 LRP1Q07954 4544 aaKnown RBP8.31□□□□□ -1.08
CHD3-211ENST00000481999 KRTAP10-4P60372 401 aaPredicted RBP8.3□□□□□ -1.08
CHD3-211ENST00000481999 KIAA1109Q2LD37 5005 aa8.29□□□□□ -1.08
CHD3-211ENST00000481999 PKHD1L1Q86WI1 4243 aa8.29□□□□□ -1.08
CHD3-211ENST00000481999 LOC101927531A0A1B0GV80 90 aa8.29□□□□□ -1.08
CHD3-211ENST00000481999 C8orf87E5RJ46 101 aa8.28□□□□□ -1.08
CHD3-211ENST00000481999 Q5VV11 94 aa8.28□□□□□ -1.08
CHD3-211ENST00000481999 TYMSOSQ8TAI1 123 aa8.28□□□□□ -1.08
CHD3-211ENST00000481999 RYR1P21817 5038 aa8.27□□□□□ -1.09
CHD3-211ENST00000481999 KRTAP13-3Q3SY46 172 aa8.24□□□□□ -1.09
CHD3-211ENST00000481999 PRR15LQ9BU68 103 aa8.24□□□□□ -1.09
CHD3-211ENST00000481999 Q5W150 140 aa8.24□□□□□ -1.09
CHD3-211ENST00000481999 PMAIP1Q13794 54 aa8.23□□□□□ -1.09
CHD3-211ENST00000481999 FLG2Q5D862 2391 aaPredicted RBP8.22□□□□□ -1.09
CHD3-211ENST00000481999 KRTAP17-1Q9BYP8 105 aa8.22□□□□□ -1.09
CHD3-211ENST00000481999 CHKB-CPT1BH3BT56 60 aa8.21□□□□□ -1.1
CHD3-211ENST00000481999 HRES1P13985 223 aa8.21□□□□□ -1.1
CHD3-211ENST00000481999 MYCBP2O75592 4640 aa8.2□□□□□ -1.1
CHD3-211ENST00000481999 LINC00313P59037 77 aa8.2□□□□□ -1.1
CHD3-211ENST00000481999 Q75L30 129 aa8.19□□□□□ -1.1
CHD3-211ENST00000481999 C4orf48Q5BLP8 95 aa8.17□□□□□ -1.1
CHD3-211ENST00000481999 HERC2O95714 4834 aa8.16□□□□□ -1.1
CHD3-211ENST00000481999 FAM229AH3BQW9 127 aa8.16□□□□□ -1.1
CHD3-211ENST00000481999 LINC01558Q9Y6Z2 57 aa8.16□□□□□ -1.1
CHD3-211ENST00000481999 SPAG11AQ6PDA7 123 aa8.15□□□□□ -1.1
CHD3-211ENST00000481999 LINC00304Q8N9R0 145 aa8.15□□□□□ -1.1
CHD3-211ENST00000481999 RETNLBQ9BQ08 111 aa8.13□□□□□ -1.11
CHD3-211ENST00000481999 TNXBP22105 4242 aa8.13□□□□□ -1.11
CHD3-211ENST00000481999 SPINK1P00995 79 aa8.12□□□□□ -1.11
CHD3-211ENST00000481999 A6NED7 52 aa8.1□□□□□ -1.11
CHD3-211ENST00000481999 ACYP2P14621 99 aa8.1□□□□□ -1.11
CHD3-211ENST00000481999 Q5VSD8 79 aa8.1□□□□□ -1.11
CHD3-211ENST00000481999 A8MU10 97 aa8.09□□□□□ -1.11
CHD3-211ENST00000481999 DMBT1Q9UGM3 2413 aaPredicted RBP8.08□□□□□ -1.12
CHD3-211ENST00000481999 KRTAP16-1A8MUX0 517 aa8.07□□□□□ -1.12
CHD3-211ENST00000481999 DMAC1Q96GE9 116 aa8.07□□□□□ -1.12
CHD3-211ENST00000481999 IGKV2-30P06310 120 aa8.07□□□□□ -1.12
CHD3-211ENST00000481999 Q8N1X5 172 aa8.07□□□□□ -1.12
CHD3-211ENST00000481999 LCA10Q71F78 164 aa8.05□□□□□ -1.12
CHD3-211ENST00000481999 KRTAP4-5Q9BYR2 181 aa8.04□□□□□ -1.12
CHD3-211ENST00000481999 CDC42SE1Q9NRR8 79 aa8.02□□□□□ -1.12
CHD3-211ENST00000481999 FAT3Q8TDW7 4589 aa8.02□□□□□ -1.13
CHD3-211ENST00000481999 ATP11AUNQ6ZP68 121 aa8.02□□□□□ -1.13
CHD3-211ENST00000481999 C9orf92A6NGG3 77 aa8.01□□□□□ -1.13
CHD3-211ENST00000481999 ABCA13Q86UQ4 5058 aa8□□□□□ -1.13
CHD3-211ENST00000481999 SPTSSBQ8NFR3 76 aa7.99□□□□□ -1.13
CHD3-211ENST00000481999 SPINK7P58062 85 aa7.96□□□□□ -1.13
CHD3-211ENST00000481999 IGKV2D-30A0A075B6S6 120 aa7.95□□□□□ -1.14
CHD3-211ENST00000481999 RPS29P62273 56 aaKnown RBP7.95□□□□□ -1.14
CHD3-211ENST00000481999 RBM12B-AS1Q9P1G2 102 aa7.93□□□□□ -1.14
CHD3-211ENST00000481999 KRTAP10-8P60410 259 aa7.9□□□□□ -1.14
CHD3-211ENST00000481999 PCLOQ9Y6V0 5065 aa7.88□□□□□ -1.15
CHD3-211ENST00000481999 KTN1-AS1Q86SY8 53 aa7.88□□□□□ -1.15
CHD3-211ENST00000481999 A0A1B0GU69 56 aa7.87□□□□□ -1.15
CHD3-211ENST00000481999 A6NN06 94 aa7.87□□□□□ -1.15
CHD3-211ENST00000481999 C7orf65Q6ZTY9 151 aa7.87□□□□□ -1.15
CHD3-211ENST00000481999 MT1HL1P0DM35 61 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 123.6 ms