RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 H3BMG7 143 aa3.51□□□□□ -1.85
USP54-213ENST00000481991 SNCGO76070 127 aa3.51□□□□□ -1.85
USP54-213ENST00000481991 FAM218AQ96MZ4 157 aa3.51□□□□□ -1.85
USP54-213ENST00000481991 SMIM6P0DI80 62 aa3.5□□□□□ -1.85
USP54-213ENST00000481991 FABP2P12104 132 aa3.5□□□□□ -1.85
USP54-213ENST00000481991 H1FX-AS1Q4G0G2 97 aa3.5□□□□□ -1.85
USP54-213ENST00000481991 SPRR2FQ96RM1 72 aa3.5□□□□□ -1.85
USP54-213ENST00000481991 A0A1B0GV72 72 aa3.49□□□□□ -1.85
USP54-213ENST00000481991 C3orf79P0CE67 100 aa3.49□□□□□ -1.85
USP54-213ENST00000481991 KRTAP10-5P60370 271 aa3.49□□□□□ -1.85
USP54-213ENST00000481991 SVBPQ8N300 66 aa3.49□□□□□ -1.85
USP54-213ENST00000481991 MT1BP07438 61 aa3.48□□□□□ -1.85
USP54-213ENST00000481991 BVES-AS1Q5T3Y7 98 aa3.48□□□□□ -1.85
USP54-213ENST00000481991 LINC01545Q5VT33 79 aa3.47□□□□□ -1.85
USP54-213ENST00000481991 PET117Q6UWS5 81 aa3.47□□□□□ -1.85
USP54-213ENST00000481991 C8orf87E5RJ46 101 aa3.46□□□□□ -1.86
USP54-213ENST00000481991 ANKRD29Q8N6D5 301 aa3.46□□□□□ -1.86
USP54-213ENST00000481991 YPEL4Q96NS1 127 aa3.46□□□□□ -1.86
USP54-213ENST00000481991 A0A1B0GVX0 72 aa3.45□□□□□ -1.86
USP54-213ENST00000481991 KRTDAPP60985 99 aa3.45□□□□□ -1.86
USP54-213ENST00000481991 ATOH7Q8N100 152 aa3.45□□□□□ -1.86
USP54-213ENST00000481991 C9orf118A6NHY6 69 aa3.44□□□□□ -1.86
USP54-213ENST00000481991 A0A1B0GV90 55 aa3.43□□□□□ -1.86
USP54-213ENST00000481991 SPRR2DP22532 72 aa3.43□□□□□ -1.86
USP54-213ENST00000481991 C5orf47Q569G3 176 aa3.43□□□□□ -1.86
USP54-213ENST00000481991 DSCR8Q96T75 97 aa3.43□□□□□ -1.86
USP54-213ENST00000481991 LINC00472Q9H8W2 130 aa3.43□□□□□ -1.86
USP54-213ENST00000481991 TRBV7-4A0A0J9YYF1 115 aa3.42□□□□□ -1.86
USP54-213ENST00000481991 TRACP01848 142 aa3.42□□□□□ -1.86
USP54-213ENST00000481991 RAB37Q96AX2 223 aa3.42□□□□□ -1.86
USP54-213ENST00000481991 VPS25Q9BRG1 176 aa3.42□□□□□ -1.86
USP54-213ENST00000481991 IGKV3D-7A0A0C4DH55 119 aa3.41□□□□□ -1.86
USP54-213ENST00000481991 CCKP06307 115 aa3.4□□□□□ -1.87
USP54-213ENST00000481991 KRTAP19-8Q3LI54 63 aa3.4□□□□□ -1.87
USP54-213ENST00000481991 C14orf144Q96I85 54 aa3.4□□□□□ -1.87
USP54-213ENST00000481991 H0YGX0 51 aa3.39□□□□□ -1.87
USP54-213ENST00000481991 NDUFB1O75438 58 aa3.39□□□□□ -1.87
USP54-213ENST00000481991 DLEU1O43261 78 aa3.38□□□□□ -1.87
USP54-213ENST00000481991 LCE1AQ5T7P2 110 aa3.38□□□□□ -1.87
USP54-213ENST00000481991 HIST1H4GQ99525 98 aa3.38□□□□□ -1.87
USP54-213ENST00000481991 KRTAP8-1Q8IUC2 63 aa3.37□□□□□ -1.87
USP54-213ENST00000481991 SPRR2GQ9BYE4 73 aa3.37□□□□□ -1.87
USP54-213ENST00000481991 IGKV2D-30A0A075B6S6 120 aa3.36□□□□□ -1.87
USP54-213ENST00000481991 IGKV2-30P06310 120 aa3.36□□□□□ -1.87
USP54-213ENST00000481991 SCGB1A1P11684 91 aa3.36□□□□□ -1.87
USP54-213ENST00000481991 NDUFS5O43920 106 aa3.35□□□□□ -1.87
USP54-213ENST00000481991 J3KT08 172 aa3.34□□□□□ -1.87
USP54-213ENST00000481991 RBM3P98179 157 aaKnown RBP3.34□□□□□ -1.87
USP54-213ENST00000481991 C8orf17Q9NRJ1 99 aa3.34□□□□□ -1.87
USP54-213ENST00000481991 GPR98Q8WXG9 6306 aa3.34□□□□□ -1.88
USP54-213ENST00000481991 HIST1H2BKO60814 126 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 DNAL4O96015 105 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 HIST1H2BJP06899 126 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 HIST1H2BOP23527 126 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 HIST1H2BBP33778 126 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 HIST1H2BDP58876 126 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 HIST1H2BCP62807 126 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 HIST2H2BEQ16778 126 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 C4orf26Q17RF5 130 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.33□□□□□ -1.88
USP54-213ENST00000481991 CSAG1Q6PB30 78 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 Q6ZVQ6 151 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 HIST1H2BHQ93079 126 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 HIST1H2BNQ99877 126 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 HIST1H2BMQ99879 126 aa3.33□□□□□ -1.88
USP54-213ENST00000481991 ORMDL1Q9P0S3 153 aa3.32□□□□□ -1.88
USP54-213ENST00000481991 TSTD3H0UI37 97 aa3.31□□□□□ -1.88
USP54-213ENST00000481991 SNRPEP62304 92 aaKnown RBP3.31□□□□□ -1.88
USP54-213ENST00000481991 KLKP1Q107X0 134 aa3.31□□□□□ -1.88
USP54-213ENST00000481991 A0A1B0GX51 115 aa3.3□□□□□ -1.88
USP54-213ENST00000481991 TMEM256-PLSCR3K7ERE1 68 aa3.3□□□□□ -1.88
USP54-213ENST00000481991 C2orf91Q6ZV80 131 aa3.3□□□□□ -1.88
USP54-213ENST00000481991 S4R3F8 94 aa3.3□□□□□ -1.88
USP54-213ENST00000481991 LCA10Q71F78 164 aa3.29□□□□□ -1.88
USP54-213ENST00000481991 H3BQ85 93 aa3.28□□□□□ -1.88
USP54-213ENST00000481991 C7orf65Q6ZTY9 151 aa3.28□□□□□ -1.88
USP54-213ENST00000481991 PRO2289Q9P1D8 64 aa3.28□□□□□ -1.88
USP54-213ENST00000481991 M0R143 59 aa3.27□□□□□ -1.89
USP54-213ENST00000481991 PRR15Q8IV56 129 aa3.27□□□□□ -1.89
USP54-213ENST00000481991 PSMB2P49721 201 aa3.26□□□□□ -1.89
USP54-213ENST00000481991 MRPL34Q9BQ48 92 aaKnown RBP3.26□□□□□ -1.89
USP54-213ENST00000481991 KRTAP3-1Q9BYR8 98 aa3.26□□□□□ -1.89
USP54-213ENST00000481991 PYY3Q5JQD4 70 aa3.25□□□□□ -1.89
USP54-213ENST00000481991 Q6ZQT0 140 aa3.25□□□□□ -1.89
USP54-213ENST00000481991 PRO1854Q9UHT4 67 aa3.25□□□□□ -1.89
USP54-213ENST00000481991 A0A0B4J2C4 111 aa3.24□□□□□ -1.89
USP54-213ENST00000481991 C9JAW5 83 aa3.24□□□□□ -1.89
USP54-213ENST00000481991 TRIAP1O43715 76 aa3.24□□□□□ -1.89
USP54-213ENST00000481991 hDV103S1A0JD37 113 aa3.23□□□□□ -1.89
USP54-213ENST00000481991 K7ERU9 68 aa3.23□□□□□ -1.89
USP54-213ENST00000481991 UBE2V1Q13404 147 aa3.23□□□□□ -1.89
USP54-213ENST00000481991 TMEM254Q8TBM7 123 aa3.23□□□□□ -1.89
USP54-213ENST00000481991 S100A2P29034 98 aa3.22□□□□□ -1.89
USP54-213ENST00000481991 Q5W150 140 aa3.22□□□□□ -1.89
USP54-213ENST00000481991 K7EQZ3 153 aa3.21□□□□□ -1.9
USP54-213ENST00000481991 C1orf64Q8NEQ6 169 aa3.21□□□□□ -1.9
USP54-213ENST00000481991 PLAC4Q8WY50 150 aa3.21□□□□□ -1.9
USP54-213ENST00000481991 CRIPTQ9P021 101 aa3.21□□□□□ -1.9
USP54-213ENST00000481991 MMP24-AS1A0A0U1RRL7 71 aa3.2□□□□□ -1.9
USP54-213ENST00000481991 KRTAP23-1A1A580 65 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms