RNA–Protein interactions for RNA: ENST00000480614.1

VEGFA-212, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 12,167 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-212ENST00000480614 REV3LO60673 3130 aa5.54□□□□□ -1.52
VEGFA-212ENST00000480614 KRTAP10-2P60368 255 aa5.54□□□□□ -1.52
VEGFA-212ENST00000480614 LAMA1P25391 3075 aa5.53□□□□□ -1.52
VEGFA-212ENST00000480614 KRTAP25-1Q3LHN0 102 aa5.53□□□□□ -1.52
VEGFA-212ENST00000480614 TENM2Q9NT68 2774 aa5.52□□□□□ -1.53
VEGFA-212ENST00000480614 UTRNP46939 3433 aa5.49□□□□□ -1.53
VEGFA-212ENST00000480614 A8MUU9 505 aa5.49□□□□□ -1.53
VEGFA-212ENST00000480614 DMXL1Q9Y485 3027 aa5.46□□□□□ -1.54
VEGFA-212ENST00000480614 FREM2Q5SZK8 3169 aa5.46□□□□□ -1.54
VEGFA-212ENST00000480614 C20orf166-AS1Q96NR2 134 aa5.45□□□□□ -1.54
VEGFA-212ENST00000480614 NOTCH2NLQ7Z3S9 236 aa5.42□□□□□ -1.54
VEGFA-212ENST00000480614 RANBP2P49792 3224 aaKnown RBP5.41□□□□□ -1.54
VEGFA-212ENST00000480614 HRNRQ86YZ3 2850 aaPredicted RBP5.41□□□□□ -1.54
VEGFA-212ENST00000480614 TNP1P09430 55 aa5.4□□□□□ -1.55
VEGFA-212ENST00000480614 HTTP42858 3142 aa5.39□□□□□ -1.55
VEGFA-212ENST00000480614 PP632Q6XCG6 107 aa5.39□□□□□ -1.55
VEGFA-212ENST00000480614 ATMQ13315 3056 aa5.38□□□□□ -1.55
VEGFA-212ENST00000480614 CELSR1Q9NYQ6 3014 aa5.37□□□□□ -1.55
VEGFA-212ENST00000480614 COL7A1Q02388 2944 aa5.37□□□□□ -1.55
VEGFA-212ENST00000480614 NDUFAF8A1L188 74 aa5.36□□□□□ -1.55
VEGFA-212ENST00000480614 Q6ZRN7 208 aaPredicted RBP5.34□□□□□ -1.55
VEGFA-212ENST00000480614 BOD1L1Q8NFC6 3051 aa5.34□□□□□ -1.55
VEGFA-212ENST00000480614 A8MU10 97 aa5.33□□□□□ -1.56
VEGFA-212ENST00000480614 KRTAP13-1Q8IUC0 172 aa5.31□□□□□ -1.56
VEGFA-212ENST00000480614 KRTAP13-2Q52LG2 175 aa5.3□□□□□ -1.56
VEGFA-212ENST00000480614 ADGRG4Q8IZF6 3080 aa5.28□□□□□ -1.56
VEGFA-212ENST00000480614 C10orf95Q9H7T3 257 aa5.28□□□□□ -1.56
VEGFA-212ENST00000480614 KRTAP11-1Q8IUC1 163 aa5.27□□□□□ -1.57
VEGFA-212ENST00000480614 KRTAP21-3Q3LHN1 58 aa5.23□□□□□ -1.57
VEGFA-212ENST00000480614 CELSR3Q9NYQ7 3312 aa5.21□□□□□ -1.57
VEGFA-212ENST00000480614 KRTAP7-1Q8IUC3 87 aa5.19□□□□□ -1.58
VEGFA-212ENST00000480614 MKI67P46013 3256 aaKnown RBP5.17□□□□□ -1.58
VEGFA-212ENST00000480614 FBN1P35555 2871 aaKnown RBP5.16□□□□□ -1.58
VEGFA-212ENST00000480614 PRO2289Q9P1D8 64 aa5.16□□□□□ -1.58
VEGFA-212ENST00000480614 COL6A3P12111 3177 aa5.15□□□□□ -1.58
VEGFA-212ENST00000480614 XIRP2A4UGR9 3374 aa5.15□□□□□ -1.58
VEGFA-212ENST00000480614 MEGF8Q7Z7M0 2845 aa5.13□□□□□ -1.59
VEGFA-212ENST00000480614 KRTAP10-8P60410 259 aa5.11□□□□□ -1.59
VEGFA-212ENST00000480614 P0C880 135 aa5.09□□□□□ -1.59
VEGFA-212ENST00000480614 TPRXLQ17RH7 258 aa5.09□□□□□ -1.59
VEGFA-212ENST00000480614 XP32Q5T750 250 aa5.09□□□□□ -1.6
VEGFA-212ENST00000480614 FBN3Q75N90 2809 aa5.08□□□□□ -1.6
VEGFA-212ENST00000480614 UNC80Q8N2C7 3258 aa5.08□□□□□ -1.6
VEGFA-212ENST00000480614 H0YAA0 97 aa5.04□□□□□ -1.6
VEGFA-212ENST00000480614 CFAP47Q6ZTR5 3102 aa5.01□□□□□ -1.61
VEGFA-212ENST00000480614 LAMA3Q16787 3333 aa5.01□□□□□ -1.61
VEGFA-212ENST00000480614 USP34Q70CQ2 3546 aa5.01□□□□□ -1.61
VEGFA-212ENST00000480614 KRTAP1-4P0C5Y4 121 aa4.99□□□□□ -1.61
VEGFA-212ENST00000480614 KRTAP10-10P60014 251 aa4.98□□□□□ -1.61
VEGFA-212ENST00000480614 DNAH14Q0VDD8 3507 aa4.96□□□□□ -1.62
VEGFA-212ENST00000480614 KRTAP13-3Q3SY46 172 aa4.9□□□□□ -1.63
VEGFA-212ENST00000480614 BRCA2P51587 3418 aa4.9□□□□□ -1.63
VEGFA-212ENST00000480614 A0A1B0GVY2 172 aa4.89□□□□□ -1.63
VEGFA-212ENST00000480614 VCANP13611 3396 aa4.89□□□□□ -1.63
VEGFA-212ENST00000480614 SPEGQ15772 3267 aa4.88□□□□□ -1.63
VEGFA-212ENST00000480614 EYSQ5T1H1 3165 aa4.86□□□□□ -1.63
VEGFA-212ENST00000480614 OTOGQ6ZRI0 2925 aa4.85□□□□□ -1.63
VEGFA-212ENST00000480614 ZFHX3Q15911 3703 aa4.83□□□□□ -1.64
VEGFA-212ENST00000480614 KRTAP13-4Q3LI77 160 aa4.78□□□□□ -1.64
VEGFA-212ENST00000480614 SPTBN5Q9NRC6 3674 aaKnown RBP4.76□□□□□ -1.65
VEGFA-212ENST00000480614 NBPF19A0A087WUL8 3843 aa4.74□□□□□ -1.65
VEGFA-212ENST00000480614 CDH23Q9H251 3354 aa4.73□□□□□ -1.65
VEGFA-212ENST00000480614 AKAP9Q99996 3911 aa4.71□□□□□ -1.65
VEGFA-212ENST00000480614 MYO15AQ9UKN7 3530 aa4.7□□□□□ -1.66
VEGFA-212ENST00000480614 KRTAP12-2P59991 146 aa4.69□□□□□ -1.66
VEGFA-212ENST00000480614 TRRAPQ9Y4A5 3859 aa4.62□□□□□ -1.67
VEGFA-212ENST00000480614 KRTAP12-1P59990 96 aa4.62□□□□□ -1.67
VEGFA-212ENST00000480614 KRTAP15-1Q3LI76 137 aa4.62□□□□□ -1.67
VEGFA-212ENST00000480614 SZT2Q5T011 3432 aa4.61□□□□□ -1.67
VEGFA-212ENST00000480614 INE1O15225 51 aa4.6□□□□□ -1.67
VEGFA-212ENST00000480614 ZFHX4Q86UP3 3567 aa4.58□□□□□ -1.68
VEGFA-212ENST00000480614 LOC400499M0QZD8 3231 aa4.57□□□□□ -1.68
VEGFA-212ENST00000480614 DMDP11532 3685 aa4.57□□□□□ -1.68
VEGFA-212ENST00000480614 DCHS1Q96JQ0 3298 aa4.55□□□□□ -1.68
VEGFA-212ENST00000480614 LAMA5O15230 3695 aa4.54□□□□□ -1.68
VEGFA-212ENST00000480614 DNAH1Q9P2D7 4330 aa4.51□□□□□ -1.69
VEGFA-212ENST00000480614 ALMS1Q8TCU4 4167 aa4.49□□□□□ -1.69
VEGFA-212ENST00000480614 WDFY3Q8IZQ1 3526 aa4.47□□□□□ -1.69
VEGFA-212ENST00000480614 SPENQ96T58 3664 aaKnown RBP4.44□□□□□ -1.7
VEGFA-212ENST00000480614 ASPMQ8IZT6 3477 aa4.44□□□□□ -1.7
VEGFA-212ENST00000480614 KRTAP3-1Q9BYR8 98 aa4.4□□□□□ -1.7
VEGFA-212ENST00000480614 VPS13CQ709C8 3753 aa4.4□□□□□ -1.71
VEGFA-212ENST00000480614 KRTAP10-6P60371 365 aaPredicted RBP4.39□□□□□ -1.71
VEGFA-212ENST00000480614 BSNQ9UPA5 3926 aa4.39□□□□□ -1.71
VEGFA-212ENST00000480614 KRTAP10-12P60413 245 aa4.38□□□□□ -1.71
VEGFA-212ENST00000480614 ZNF469Q96JG9 3925 aaPredicted RBP4.37□□□□□ -1.71
VEGFA-212ENST00000480614 DNAH3Q8TD57 4116 aa4.37□□□□□ -1.71
VEGFA-212ENST00000480614 HUWE1Q7Z6Z7 4374 aaKnown RBP4.37□□□□□ -1.71
VEGFA-212ENST00000480614 KRTAP23-1A1A580 65 aa4.36□□□□□ -1.71
VEGFA-212ENST00000480614 SMG1Q96Q15 3661 aaKnown RBP4.36□□□□□ -1.71
VEGFA-212ENST00000480614 DNAH7Q8WXX0 4024 aa4.34□□□□□ -1.71
VEGFA-212ENST00000480614 CMYA5Q8N3K9 4069 aa4.33□□□□□ -1.72
VEGFA-212ENST00000480614 LYSTQ99698 3801 aa4.29□□□□□ -1.72
VEGFA-212ENST00000480614 CSMD1Q96PZ7 3565 aa4.27□□□□□ -1.73
VEGFA-212ENST00000480614 ANK3Q12955 4377 aaKnown RBP4.24□□□□□ -1.73
VEGFA-212ENST00000480614 RELNP78509 3460 aa4.23□□□□□ -1.73
VEGFA-212ENST00000480614 KRTAP12-3P60328 96 aa4.23□□□□□ -1.73
VEGFA-212ENST00000480614 HECTD4Q9Y4D8 3996 aa4.22□□□□□ -1.73
VEGFA-212ENST00000480614 ANK2Q01484 3957 aa4.22□□□□□ -1.73
VEGFA-212ENST00000480614 KRTAP3-2Q9BYR7 98 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms