RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 CCKP06307 115 aa8.38□□□□□ -1.07
C9orf3-217ENST00000479161 Q96NJ1 140 aa8.38□□□□□ -1.07
C9orf3-217ENST00000479161 A0A1B0GW54 56 aa8.37□□□□□ -1.07
C9orf3-217ENST00000479161 PDE6GP18545 87 aa8.35□□□□□ -1.07
C9orf3-217ENST00000479161 RPL37P61927 97 aaKnown RBP8.34□□□□□ -1.07
C9orf3-217ENST00000479161 ANAPC13Q9BS18 74 aa8.34□□□□□ -1.07
C9orf3-217ENST00000479161 LOC110117498A0A087WWA1 95 aa8.32□□□□□ -1.08
C9orf3-217ENST00000479161 KRTAP9-2Q9BYQ4 174 aa8.32□□□□□ -1.08
C9orf3-217ENST00000479161 LINC00472Q9H8W2 130 aa8.32□□□□□ -1.08
C9orf3-217ENST00000479161 Q75L30 129 aa8.3□□□□□ -1.08
C9orf3-217ENST00000479161 KRTAP4-1Q9BYQ7 146 aa8.3□□□□□ -1.08
C9orf3-217ENST00000479161 PCOTHQ58A44 107 aa8.29□□□□□ -1.08
C9orf3-217ENST00000479161 LCE2AQ5TA79 106 aaPredicted RBP8.29□□□□□ -1.08
C9orf3-217ENST00000479161 Q6ZQT0 140 aa8.29□□□□□ -1.08
C9orf3-217ENST00000479161 C14orf132Q9NPU4 83 aa8.29□□□□□ -1.08
C9orf3-217ENST00000479161 FAT4Q6V0I7 4981 aa8.29□□□□□ -1.08
C9orf3-217ENST00000479161 IGKV4-1P06312 121 aa8.26□□□□□ -1.09
C9orf3-217ENST00000479161 ATP5EP2Q5VTU8 51 aa8.26□□□□□ -1.09
C9orf3-217ENST00000479161 C20orf166-AS1Q96NR2 134 aa8.25□□□□□ -1.09
C9orf3-217ENST00000479161 J3KT08 172 aa8.24□□□□□ -1.09
C9orf3-217ENST00000479161 A8MUU9 505 aa8.22□□□□□ -1.09
C9orf3-217ENST00000479161 LINC00313P59037 77 aa8.21□□□□□ -1.1
C9orf3-217ENST00000479161 LINC00846Q9NV44 126 aa8.21□□□□□ -1.1
C9orf3-217ENST00000479161 FAM236AA0A1B0GUQ0 79 aa8.2□□□□□ -1.1
C9orf3-217ENST00000479161 FAM236BA0A1B0GV22 79 aa8.2□□□□□ -1.1
C9orf3-217ENST00000479161 HIST1H4AP62805 103 aaKnown RBP8.2□□□□□ -1.1
C9orf3-217ENST00000479161 ATP11AUNQ6ZP68 121 aa8.2□□□□□ -1.1
C9orf3-217ENST00000479161 C8orf87E5RJ46 101 aa8.18□□□□□ -1.1
C9orf3-217ENST00000479161 ATOX1O00244 68 aa8.17□□□□□ -1.1
C9orf3-217ENST00000479161 DEFB116Q30KQ4 102 aa8.17□□□□□ -1.1
C9orf3-217ENST00000479161 A0A1B0GVX0 72 aa8.16□□□□□ -1.1
C9orf3-217ENST00000479161 KRTAP16-1A8MUX0 517 aa8.16□□□□□ -1.1
C9orf3-217ENST00000479161 DSCR10P59022 87 aa8.16□□□□□ -1.1
C9orf3-217ENST00000479161 UBL5Q9BZL1 73 aa8.16□□□□□ -1.1
C9orf3-217ENST00000479161 CCDC179H3BU77 68 aa8.13□□□□□ -1.11
C9orf3-217ENST00000479161 NDUFB1O75438 58 aa8.13□□□□□ -1.11
C9orf3-217ENST00000479161 KRTAP19-2Q3LHN2 52 aa8.13□□□□□ -1.11
C9orf3-217ENST00000479161 IGHV6-1A0A0B4J1U7 121 aa8.12□□□□□ -1.11
C9orf3-217ENST00000479161 IGKV3D-7A0A0C4DH55 119 aa8.12□□□□□ -1.11
C9orf3-217ENST00000479161 KRTAP9-6A0A140TA67 174 aa8.12□□□□□ -1.11
C9orf3-217ENST00000479161 UQCRQO14949 82 aa8.12□□□□□ -1.11
C9orf3-217ENST00000479161 A8MWP4 228 aa8.11□□□□□ -1.11
C9orf3-217ENST00000479161 NREPQ16612 68 aa8.11□□□□□ -1.11
C9orf3-217ENST00000479161 NOTCH2NLQ7Z3S9 236 aa8.11□□□□□ -1.11
C9orf3-217ENST00000479161 LCE2CQ5TA81 110 aa8.1□□□□□ -1.11
C9orf3-217ENST00000479161 COX7CP15954 63 aa8.09□□□□□ -1.11
C9orf3-217ENST00000479161 CXCL6P80162 114 aa8.07□□□□□ -1.12
C9orf3-217ENST00000479161 Q6ZVQ6 151 aa8.05□□□□□ -1.12
C9orf3-217ENST00000479161 PRR15Q8IV56 129 aa8.04□□□□□ -1.12
C9orf3-217ENST00000479161 SERP2Q8N6R1 65 aa8.04□□□□□ -1.12
C9orf3-217ENST00000479161 Q8N9P0 234 aaPredicted RBP8.04□□□□□ -1.12
C9orf3-217ENST00000479161 C8orf17Q9NRJ1 99 aa8.02□□□□□ -1.13
C9orf3-217ENST00000479161 SMIM20Q8N5G0 67 aa8.01□□□□□ -1.13
C9orf3-217ENST00000479161 A0A087WVE0 104 aa8□□□□□ -1.13
C9orf3-217ENST00000479161 FLGP20930 4061 aaPredicted RBP7.97□□□□□ -1.13
C9orf3-217ENST00000479161 BPY2O14599 106 aa7.97□□□□□ -1.13
C9orf3-217ENST00000479161 MT1HP80294 61 aa7.97□□□□□ -1.13
C9orf3-217ENST00000479161 TMEM254Q8TBM7 123 aa7.95□□□□□ -1.14
C9orf3-217ENST00000479161 ZCCHC13Q8WW36 166 aaKnown RBP7.95□□□□□ -1.14
C9orf3-217ENST00000479161 TRAV7A0A075B6U4 112 aa7.94□□□□□ -1.14
C9orf3-217ENST00000479161 COX6B2Q6YFQ2 88 aa7.94□□□□□ -1.14
C9orf3-217ENST00000479161 MMP24-AS1A0A0U1RRL7 71 aa7.93□□□□□ -1.14
C9orf3-217ENST00000479161 K7EQZ3 153 aa7.93□□□□□ -1.14
C9orf3-217ENST00000479161 MRPL34Q9BQ48 92 aaKnown RBP7.92□□□□□ -1.14
C9orf3-217ENST00000479161 TMEM258P61165 79 aa7.91□□□□□ -1.14
C9orf3-217ENST00000479161 hDV103S1A0JD37 113 aa7.9□□□□□ -1.14
C9orf3-217ENST00000479161 MPLKIPQ8TAP9 179 aa7.9□□□□□ -1.14
C9orf3-217ENST00000479161 HRES1P13985 223 aa7.86□□□□□ -1.15
C9orf3-217ENST00000479161 RBM12B-AS1Q9P1G2 102 aa7.84□□□□□ -1.15
C9orf3-217ENST00000479161 SPINK7P58062 85 aa7.83□□□□□ -1.16
C9orf3-217ENST00000479161 RPS28P62857 69 aaKnown RBP7.83□□□□□ -1.16
C9orf3-217ENST00000479161 KLKP1Q107X0 134 aa7.82□□□□□ -1.16
C9orf3-217ENST00000479161 CASC2Q6XLA1 102 aa7.81□□□□□ -1.16
C9orf3-217ENST00000479161 NDUFC1O43677 76 aa7.8□□□□□ -1.16
C9orf3-217ENST00000479161 LORP23490 312 aaPredicted RBP7.8□□□□□ -1.16
C9orf3-217ENST00000479161 Q8N9L7 120 aa7.8□□□□□ -1.16
C9orf3-217ENST00000479161 M0R2T5 61 aa7.79□□□□□ -1.16
C9orf3-217ENST00000479161 KRTAP10-6P60371 365 aaPredicted RBP7.79□□□□□ -1.16
C9orf3-217ENST00000479161 C20orf197Q8N268 126 aa7.78□□□□□ -1.16
C9orf3-217ENST00000479161 CYSTM1Q9H1C7 97 aa7.78□□□□□ -1.16
C9orf3-217ENST00000479161 CRCT1Q9UGL9 99 aa7.78□□□□□ -1.16
C9orf3-217ENST00000479161 FSIP2Q5CZC0 6907 aa7.77□□□□□ -1.17
C9orf3-217ENST00000479161 HCG22E2RYF7 251 aa7.76□□□□□ -1.17
C9orf3-217ENST00000479161 NDUFS5O43920 106 aa7.76□□□□□ -1.17
C9orf3-217ENST00000479161 WFDC13Q8IUB5 93 aa7.76□□□□□ -1.17
C9orf3-217ENST00000479161 ATP5EP56381 51 aaPredicted RBP7.75□□□□□ -1.17
C9orf3-217ENST00000479161 OCR1Q9BZK8 76 aa7.75□□□□□ -1.17
C9orf3-217ENST00000479161 FAM236DA0A1B0GTK5 79 aa7.74□□□□□ -1.17
C9orf3-217ENST00000479161 FAM236CP0DP71 79 aa7.74□□□□□ -1.17
C9orf3-217ENST00000479161 H7BZZ5 65 aa7.72□□□□□ -1.17
C9orf3-217ENST00000479161 Q5W150 140 aa7.7□□□□□ -1.18
C9orf3-217ENST00000479161 TP53AIP1Q9HCN2 124 aa7.68□□□□□ -1.18
C9orf3-217ENST00000479161 C7orf65Q6ZTY9 151 aa7.67□□□□□ -1.18
C9orf3-217ENST00000479161 SERP1Q9Y6X1 66 aa7.66□□□□□ -1.18
C9orf3-217ENST00000479161 SNURFQ9Y675 71 aa7.65□□□□□ -1.18
C9orf3-217ENST00000479161 C5orf47Q569G3 176 aa7.61□□□□□ -1.19
C9orf3-217ENST00000479161 IGKV2D-30A0A075B6S6 120 aa7.6□□□□□ -1.19
C9orf3-217ENST00000479161 IGKV2-30P06310 120 aa7.6□□□□□ -1.19
C9orf3-217ENST00000479161 KRTAP9-8Q9BYQ0 159 aa7.6□□□□□ -1.19
C9orf3-217ENST00000479161 H3BPC8 53 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms