RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 RHEBQ15382 184 aa1.77□□□□□ -2.13
VPS50-214ENST00000477935 TMEM170BQ5T4T1 132 aa1.77□□□□□ -2.13
VPS50-214ENST00000477935 SS18L2Q9UHA2 77 aa1.77□□□□□ -2.13
VPS50-214ENST00000477935 TRBV7-6A0A0J9YX20 115 aa1.76□□□□□ -2.13
VPS50-214ENST00000477935 MYMXA0A1B0GTQ4 84 aa1.76□□□□□ -2.13
VPS50-214ENST00000477935 FAM236AA0A1B0GUQ0 79 aa1.76□□□□□ -2.13
VPS50-214ENST00000477935 FAM236BA0A1B0GV22 79 aa1.76□□□□□ -2.13
VPS50-214ENST00000477935 COX7BP24311 80 aa1.76□□□□□ -2.13
VPS50-214ENST00000477935 H1FX-AS1Q4G0G2 97 aa1.76□□□□□ -2.13
VPS50-214ENST00000477935 CLEC2BQ92478 149 aa1.76□□□□□ -2.13
VPS50-214ENST00000477935 LINC01546A6NGU7 62 aa1.75□□□□□ -2.13
VPS50-214ENST00000477935 KRTAP25-1Q3LHN0 102 aa1.75□□□□□ -2.13
VPS50-214ENST00000477935 TRAV13-2A0A0B4J235 113 aa1.74□□□□□ -2.13
VPS50-214ENST00000477935 C11orf86A6NJI1 115 aa1.74□□□□□ -2.13
VPS50-214ENST00000477935 HBDP02042 147 aa1.74□□□□□ -2.13
VPS50-214ENST00000477935 SOSTDC1Q6X4U4 206 aa1.74□□□□□ -2.13
VPS50-214ENST00000477935 C3orf79P0CE67 100 aa1.73□□□□□ -2.13
VPS50-214ENST00000477935 ADIRFQ15847 76 aa1.73□□□□□ -2.13
VPS50-214ENST00000477935 BAGE3Q86Y29 109 aa1.73□□□□□ -2.13
VPS50-214ENST00000477935 WFDC13Q8IUB5 93 aa1.73□□□□□ -2.13
VPS50-214ENST00000477935 OR13C6PQ8NH95 151 aa1.73□□□□□ -2.13
VPS50-214ENST00000477935 NHP2Q9NX24 153 aaKnown RBP1.73□□□□□ -2.13
VPS50-214ENST00000477935 NAT8Q9UHE5 227 aa1.73□□□□□ -2.13
VPS50-214ENST00000477935 H3BQ85 93 aa1.72□□□□□ -2.13
VPS50-214ENST00000477935 MT4P47944 62 aa1.72□□□□□ -2.13
VPS50-214ENST00000477935 OCIAD2Q56VL3 154 aa1.72□□□□□ -2.13
VPS50-214ENST00000477935 SPANXDQ9BXN6 97 aa1.72□□□□□ -2.13
VPS50-214ENST00000477935 AHNAKQ09666 5890 aaKnown RBP1.71□□□□□ -2.14
VPS50-214ENST00000477935 FAM240AA0A1B0GVK7 77 aa1.71□□□□□ -2.14
VPS50-214ENST00000477935 SRP19P09132 144 aaKnown RBP1.71□□□□□ -2.14
VPS50-214ENST00000477935 SMCO4Q9NRQ5 59 aa1.71□□□□□ -2.14
VPS50-214ENST00000477935 SPANXCQ9NY87 97 aa1.71□□□□□ -2.14
VPS50-214ENST00000477935 PSMB2P49721 201 aa1.7□□□□□ -2.14
VPS50-214ENST00000477935 SLC51BQ86UW2 128 aa1.7□□□□□ -2.14
VPS50-214ENST00000477935 BATF3Q9NR55 127 aa1.7□□□□□ -2.14
VPS50-214ENST00000477935 CRIPTQ9P021 101 aa1.7□□□□□ -2.14
VPS50-214ENST00000477935 PRO0628Q9UI54 55 aa1.7□□□□□ -2.14
VPS50-214ENST00000477935 C9JQL5 133 aa1.69□□□□□ -2.14
VPS50-214ENST00000477935 SMLR1H3BR10 107 aa1.69□□□□□ -2.14
VPS50-214ENST00000477935 RBM3P98179 157 aaKnown RBP1.69□□□□□ -2.14
VPS50-214ENST00000477935 KLKP1Q107X0 134 aa1.69□□□□□ -2.14
VPS50-214ENST00000477935 TEN1Q86WV5 123 aa1.69□□□□□ -2.14
VPS50-214ENST00000477935 TRAV12-1A0A0B4J245 112 aa1.68□□□□□ -2.14
VPS50-214ENST00000477935 PRR15Q8IV56 129 aa1.68□□□□□ -2.14
VPS50-214ENST00000477935 DSCR8Q96T75 97 aa1.68□□□□□ -2.14
VPS50-214ENST00000477935 SIGMAR1Q99720 223 aa1.68□□□□□ -2.14
VPS50-214ENST00000477935 LEPROTO15243 131 aa1.67□□□□□ -2.14
VPS50-214ENST00000477935 PPDPFLQ8WWR9 84 aa1.67□□□□□ -2.14
VPS50-214ENST00000477935 A0A087WSZ3 146 aa1.66□□□□□ -2.14
VPS50-214ENST00000477935 A0A0B4J2C4 111 aa1.66□□□□□ -2.14
VPS50-214ENST00000477935 C8orf87E5RJ46 101 aa1.66□□□□□ -2.14
VPS50-214ENST00000477935 J3QQQ9 107 aa1.66□□□□□ -2.14
VPS50-214ENST00000477935 NPC2P61916 151 aa1.66□□□□□ -2.14
VPS50-214ENST00000477935 MT1XP80297 61 aa1.66□□□□□ -2.14
VPS50-214ENST00000477935 CSAG1Q6PB30 78 aa1.66□□□□□ -2.14
VPS50-214ENST00000477935 TCTE3Q8IZS6 198 aa1.66□□□□□ -2.14
VPS50-214ENST00000477935 MT-ND4LP03901 98 aa1.65□□□□□ -2.15
VPS50-214ENST00000477935 LINC00614P0C842 121 aa1.65□□□□□ -2.15
VPS50-214ENST00000477935 VAMP3Q15836 100 aa1.65□□□□□ -2.15
VPS50-214ENST00000477935 LINC00308Q8TCZ7 52 aa1.65□□□□□ -2.15
VPS50-214ENST00000477935 SNHG12Q9BXW3 62 aa1.65□□□□□ -2.15
VPS50-214ENST00000477935 MUC5BQ9HC84 5762 aaPredicted RBP1.65□□□□□ -2.15
VPS50-214ENST00000477935 PEA15Q15121 130 aa1.64□□□□□ -2.15
VPS50-214ENST00000477935 LYRM7Q5U5X0 104 aa1.64□□□□□ -2.15
VPS50-214ENST00000477935 IGKV3D-7A0A0C4DH55 119 aa1.63□□□□□ -2.15
VPS50-214ENST00000477935 TSPEAR-AS2P59090 65 aa1.63□□□□□ -2.15
VPS50-214ENST00000477935 FABP9Q0Z7S8 132 aa1.63□□□□□ -2.15
VPS50-214ENST00000477935 KRTAP13-4Q3LI77 160 aa1.63□□□□□ -2.15
VPS50-214ENST00000477935 Q6ZQY7 126 aa1.63□□□□□ -2.15
VPS50-214ENST00000477935 LCA10Q71F78 164 aa1.63□□□□□ -2.15
VPS50-214ENST00000477935 PLAC4Q8WY50 150 aa1.63□□□□□ -2.15
VPS50-214ENST00000477935 RAB37Q96AX2 223 aa1.63□□□□□ -2.15
VPS50-214ENST00000477935 V9GYY9 64 aa1.63□□□□□ -2.15
VPS50-214ENST00000477935 MUC5ACP98088 5654 aa1.63□□□□□ -2.15
VPS50-214ENST00000477935 hADV29S1A0JD25 119 aa1.62□□□□□ -2.15
VPS50-214ENST00000477935 H3BUT2 72 aa1.62□□□□□ -2.15
VPS50-214ENST00000477935 TIMM17BO60830 172 aa1.62□□□□□ -2.15
VPS50-214ENST00000477935 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.62□□□□□ -2.15
VPS50-214ENST00000477935 LINC00575Q6W349 94 aa1.62□□□□□ -2.15
VPS50-214ENST00000477935 COPS9Q8WXC6 57 aa1.62□□□□□ -2.15
VPS50-214ENST00000477935 IFI27L1Q96BM0 104 aa1.62□□□□□ -2.15
VPS50-214ENST00000477935 SEC11CQ9BY50 192 aa1.62□□□□□ -2.15
VPS50-214ENST00000477935 TRAPPC1Q9Y5R8 145 aa1.62□□□□□ -2.15
VPS50-214ENST00000477935 PLNP26678 52 aa1.61□□□□□ -2.15
VPS50-214ENST00000477935 K7ERS5 55 aa1.6□□□□□ -2.15
VPS50-214ENST00000477935 PMCHL1Q16048 86 aa1.6□□□□□ -2.15
VPS50-214ENST00000477935 LINC00472Q9H8W2 130 aa1.6□□□□□ -2.15
VPS50-214ENST00000477935 A0A1B0GU33 70 aa1.59□□□□□ -2.15
VPS50-214ENST00000477935 A6NED7 52 aa1.59□□□□□ -2.15
VPS50-214ENST00000477935 PDE6GP18545 87 aa1.59□□□□□ -2.15
VPS50-214ENST00000477935 KRTAP19-3Q7Z4W3 81 aa1.59□□□□□ -2.15
VPS50-214ENST00000477935 SMIM11BQ8TCY0 68 aa1.59□□□□□ -2.15
VPS50-214ENST00000477935 C12orf57Q99622 126 aa1.59□□□□□ -2.15
VPS50-214ENST00000477935 CYSTM1Q9H1C7 97 aa1.59□□□□□ -2.15
VPS50-214ENST00000477935 TRBV7-4A0A0J9YYF1 115 aa1.58□□□□□ -2.16
VPS50-214ENST00000477935 TRGC2P03986 189 aa1.58□□□□□ -2.16
VPS50-214ENST00000477935 S100A2P29034 98 aa1.58□□□□□ -2.16
VPS50-214ENST00000477935 RGS21Q2M5E4 152 aa1.58□□□□□ -2.16
VPS50-214ENST00000477935 C18orf32Q8TCD1 76 aa1.58□□□□□ -2.16
VPS50-214ENST00000477935 YPEL4Q96NS1 127 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms