RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 IGHV6-1A0A0B4J1U7 121 aa6.5□□□□□ -1.37
HLA-DMB-260ENST00000477537 C8orf17Q9NRJ1 99 aa6.5□□□□□ -1.37
HLA-DMB-260ENST00000477537 A0A1B0GVX0 72 aa6.49□□□□□ -1.37
HLA-DMB-260ENST00000477537 H0Y9P7 68 aa6.49□□□□□ -1.37
HLA-DMB-260ENST00000477537 LORP23490 312 aaPredicted RBP6.48□□□□□ -1.37
HLA-DMB-260ENST00000477537 SSBP3-AS1Q7Z2R9 100 aa6.48□□□□□ -1.37
HLA-DMB-260ENST00000477537 LINC00208Q96KT6 92 aa6.48□□□□□ -1.37
HLA-DMB-260ENST00000477537 CD164Q04900 197 aa6.47□□□□□ -1.37
HLA-DMB-260ENST00000477537 ASB16-AS1Q495Z4 193 aa6.47□□□□□ -1.37
HLA-DMB-260ENST00000477537 C4orf26Q17RF5 130 aa6.46□□□□□ -1.37
HLA-DMB-260ENST00000477537 SPINK6Q6UWN8 80 aa6.46□□□□□ -1.37
HLA-DMB-260ENST00000477537 LINC00336Q6ZUF6 198 aa6.46□□□□□ -1.38
HLA-DMB-260ENST00000477537 APOBP04114 4563 aaKnown RBP6.46□□□□□ -1.38
HLA-DMB-260ENST00000477537 A0A087X002 238 aa6.45□□□□□ -1.38
HLA-DMB-260ENST00000477537 TRAV22A0A0B4J277 110 aa6.45□□□□□ -1.38
HLA-DMB-260ENST00000477537 A0A1B0GVY2 172 aa6.45□□□□□ -1.38
HLA-DMB-260ENST00000477537 H3BPC8 53 aa6.45□□□□□ -1.38
HLA-DMB-260ENST00000477537 KRTAP13-2Q52LG2 175 aa6.44□□□□□ -1.38
HLA-DMB-260ENST00000477537 FAM229BQ4G0N7 80 aa6.43□□□□□ -1.38
HLA-DMB-260ENST00000477537 NOTCH2NLQ7Z3S9 236 aa6.43□□□□□ -1.38
HLA-DMB-260ENST00000477537 C1orf64Q8NEQ6 169 aa6.43□□□□□ -1.38
HLA-DMB-260ENST00000477537 SMIM26A0A096LP01 95 aa6.42□□□□□ -1.38
HLA-DMB-260ENST00000477537 NDUFS5O43920 106 aa6.42□□□□□ -1.38
HLA-DMB-260ENST00000477537 TP53AIP1Q9HCN2 124 aa6.42□□□□□ -1.38
HLA-DMB-260ENST00000477537 PRO0628Q9UI54 55 aa6.42□□□□□ -1.38
HLA-DMB-260ENST00000477537 PRR4Q16378 134 aa6.41□□□□□ -1.38
HLA-DMB-260ENST00000477537 MRPL34Q9BQ48 92 aaKnown RBP6.41□□□□□ -1.38
HLA-DMB-260ENST00000477537 KRTAP1-4P0C5Y4 121 aa6.4□□□□□ -1.38
HLA-DMB-260ENST00000477537 FP248Q71RG6 208 aaPredicted RBP6.39□□□□□ -1.39
HLA-DMB-260ENST00000477537 VPS13BQ7Z7G8 4022 aa6.39□□□□□ -1.39
HLA-DMB-260ENST00000477537 FAT1Q14517 4588 aa6.39□□□□□ -1.39
HLA-DMB-260ENST00000477537 CYP4F30PQ9H0H9 118 aa6.38□□□□□ -1.39
HLA-DMB-260ENST00000477537 C4orf48Q5BLP8 95 aa6.37□□□□□ -1.39
HLA-DMB-260ENST00000477537 HSPG2P98160 4391 aa6.37□□□□□ -1.39
HLA-DMB-260ENST00000477537 C8orf87E5RJ46 101 aa6.35□□□□□ -1.39
HLA-DMB-260ENST00000477537 PLA2G1BP04054 148 aaKnown RBP6.35□□□□□ -1.39
HLA-DMB-260ENST00000477537 C1orf195Q5TG92 126 aa6.35□□□□□ -1.39
HLA-DMB-260ENST00000477537 SPANXA2-OT1Q8N9U9 137 aa6.35□□□□□ -1.39
HLA-DMB-260ENST00000477537 KIAA1109Q2LD37 5005 aa6.35□□□□□ -1.39
HLA-DMB-260ENST00000477537 RYR1P21817 5038 aa6.33□□□□□ -1.4
HLA-DMB-260ENST00000477537 PCOTHQ58A44 107 aa6.33□□□□□ -1.4
HLA-DMB-260ENST00000477537 TYMSOSQ8TAI1 123 aa6.33□□□□□ -1.4
HLA-DMB-260ENST00000477537 LIMD2Q9BT23 127 aa6.33□□□□□ -1.4
HLA-DMB-260ENST00000477537 LOC100996750A0A140TA64 210 aa6.32□□□□□ -1.4
HLA-DMB-260ENST00000477537 MPLKIPQ8TAP9 179 aa6.32□□□□□ -1.4
HLA-DMB-260ENST00000477537 KRTAP4-6Q9BYQ5 205 aa6.32□□□□□ -1.4
HLA-DMB-260ENST00000477537 SMR3BP02814 79 aaPredicted RBP6.31□□□□□ -1.4
HLA-DMB-260ENST00000477537 LINC00313P59037 77 aa6.31□□□□□ -1.4
HLA-DMB-260ENST00000477537 Q5W150 140 aa6.29□□□□□ -1.4
HLA-DMB-260ENST00000477537 IGLV7-46A0A075B6I9 117 aa6.29□□□□□ -1.4
HLA-DMB-260ENST00000477537 BIRC6Q9NR09 4857 aa6.28□□□□□ -1.4
HLA-DMB-260ENST00000477537 KRTAP13-3Q3SY46 172 aa6.27□□□□□ -1.41
HLA-DMB-260ENST00000477537 PRR26Q8N8Z3 221 aa6.27□□□□□ -1.41
HLA-DMB-260ENST00000477537 SPINK1P00995 79 aa6.27□□□□□ -1.41
HLA-DMB-260ENST00000477537 LOC101927531A0A1B0GV80 90 aa6.26□□□□□ -1.41
HLA-DMB-260ENST00000477537 Q8N9P0 234 aaPredicted RBP6.25□□□□□ -1.41
HLA-DMB-260ENST00000477537 LINC00304Q8N9R0 145 aa6.25□□□□□ -1.41
HLA-DMB-260ENST00000477537 KRTAP16-1A8MUX0 517 aa6.23□□□□□ -1.41
HLA-DMB-260ENST00000477537 RETNLBQ9BQ08 111 aa6.23□□□□□ -1.41
HLA-DMB-260ENST00000477537 KRTAP17-1Q9BYP8 105 aa6.23□□□□□ -1.41
HLA-DMB-260ENST00000477537 FAM229AH3BQW9 127 aa6.22□□□□□ -1.41
HLA-DMB-260ENST00000477537 Q1T7F1 81 aa6.22□□□□□ -1.41
HLA-DMB-260ENST00000477537 COA5Q86WW8 74 aa6.22□□□□□ -1.41
HLA-DMB-260ENST00000477537 KRTAP10-4P60372 401 aaPredicted RBP6.21□□□□□ -1.41
HLA-DMB-260ENST00000477537 SPAG11AQ6PDA7 123 aa6.21□□□□□ -1.42
HLA-DMB-260ENST00000477537 RPS29P62273 56 aaKnown RBP6.19□□□□□ -1.42
HLA-DMB-260ENST00000477537 BRK1Q8WUW1 75 aa6.18□□□□□ -1.42
HLA-DMB-260ENST00000477537 V9GYY9 64 aa6.17□□□□□ -1.42
HLA-DMB-260ENST00000477537 HERC2O95714 4834 aa6.16□□□□□ -1.42
HLA-DMB-260ENST00000477537 PSPHP1O15172 72 aa6.15□□□□□ -1.42
HLA-DMB-260ENST00000477537 IGKV2-30P06310 120 aa6.15□□□□□ -1.42
HLA-DMB-260ENST00000477537 HRES1P13985 223 aa6.15□□□□□ -1.42
HLA-DMB-260ENST00000477537 PKHD1L1Q86WI1 4243 aa6.15□□□□□ -1.43
HLA-DMB-260ENST00000477537 MYCBP2O75592 4640 aa6.14□□□□□ -1.43
HLA-DMB-260ENST00000477537 LRP1Q07954 4544 aaKnown RBP6.14□□□□□ -1.43
HLA-DMB-260ENST00000477537 ABCA13Q86UQ4 5058 aa6.12□□□□□ -1.43
HLA-DMB-260ENST00000477537 A8MUN3 132 aa6.11□□□□□ -1.43
HLA-DMB-260ENST00000477537 SEC61GP60059 68 aa6.11□□□□□ -1.43
HLA-DMB-260ENST00000477537 Q5VSD8 79 aa6.11□□□□□ -1.43
HLA-DMB-260ENST00000477537 FLG2Q5D862 2391 aaPredicted RBP6.11□□□□□ -1.43
HLA-DMB-260ENST00000477537 IGKV2D-30A0A075B6S6 120 aa6.11□□□□□ -1.43
HLA-DMB-260ENST00000477537 KRTAP4-5Q9BYR2 181 aa6.09□□□□□ -1.43
HLA-DMB-260ENST00000477537 ACYP2P14621 99 aa6.09□□□□□ -1.44
HLA-DMB-260ENST00000477537 FAT3Q8TDW7 4589 aa6.08□□□□□ -1.44
HLA-DMB-260ENST00000477537 Q8N1X5 172 aa6.08□□□□□ -1.44
HLA-DMB-260ENST00000477537 DMAC1Q96GE9 116 aa6.08□□□□□ -1.44
HLA-DMB-260ENST00000477537 PRR15LQ9BU68 103 aa6.08□□□□□ -1.44
HLA-DMB-260ENST00000477537 C9orf92A6NGG3 77 aa6.07□□□□□ -1.44
HLA-DMB-260ENST00000477537 Q5VV11 94 aa6.07□□□□□ -1.44
HLA-DMB-260ENST00000477537 TNXBP22105 4242 aa6.04□□□□□ -1.44
HLA-DMB-260ENST00000477537 LINC01558Q9Y6Z2 57 aa6.03□□□□□ -1.44
HLA-DMB-260ENST00000477537 CHKB-CPT1BH3BT56 60 aa6.03□□□□□ -1.44
HLA-DMB-260ENST00000477537 PMAIP1Q13794 54 aa6.03□□□□□ -1.44
HLA-DMB-260ENST00000477537 A8MUU9 505 aa6.01□□□□□ -1.45
HLA-DMB-260ENST00000477537 C7orf65Q6ZTY9 151 aa6.01□□□□□ -1.45
HLA-DMB-260ENST00000477537 C20orf166-AS1Q96NR2 134 aa6.01□□□□□ -1.45
HLA-DMB-260ENST00000477537 Q75L30 129 aa6□□□□□ -1.45
HLA-DMB-260ENST00000477537 PCLOQ9Y6V0 5065 aa6□□□□□ -1.45
HLA-DMB-260ENST00000477537 KRTAP10-8P60410 259 aa5.98□□□□□ -1.45
HLA-DMB-260ENST00000477537 XP32Q5T750 250 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms