RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 Q8N1X5 172 aa8.64□□□□□ -1.03
HDAC6-220ENST00000477528 Q75L30 129 aa8.63□□□□□ -1.03
HDAC6-220ENST00000477528 LINC01558Q9Y6Z2 57 aa8.63□□□□□ -1.03
HDAC6-220ENST00000477528 TENM1Q9UKZ4 2725 aa8.58□□□□□ -1.04
HDAC6-220ENST00000477528 TENM3Q9P273 2699 aa8.57□□□□□ -1.04
HDAC6-220ENST00000477528 Q5VV11 94 aa8.57□□□□□ -1.04
HDAC6-220ENST00000477528 A0A087X002 238 aa8.56□□□□□ -1.04
HDAC6-220ENST00000477528 ASB16-AS1Q495Z4 193 aa8.54□□□□□ -1.04
HDAC6-220ENST00000477528 NOTCH2NLQ7Z3S9 236 aa8.54□□□□□ -1.04
HDAC6-220ENST00000477528 KTN1-AS1Q86SY8 53 aa8.53□□□□□ -1.04
HDAC6-220ENST00000477528 OTOGQ6ZRI0 2925 aa8.5□□□□□ -1.05
HDAC6-220ENST00000477528 VWFP04275 2813 aa8.49□□□□□ -1.05
HDAC6-220ENST00000477528 DMAC1Q96GE9 116 aa8.48□□□□□ -1.05
HDAC6-220ENST00000477528 NBPF19A0A087WUL8 3843 aa8.47□□□□□ -1.05
HDAC6-220ENST00000477528 ANK3Q12955 4377 aaKnown RBP8.46□□□□□ -1.06
HDAC6-220ENST00000477528 KRTAP13-2Q52LG2 175 aa8.42□□□□□ -1.06
HDAC6-220ENST00000477528 J3QL48 77 aa8.4□□□□□ -1.06
HDAC6-220ENST00000477528 SPINK7P58062 85 aa8.4□□□□□ -1.06
HDAC6-220ENST00000477528 CSMD2Q7Z408 3487 aa8.39□□□□□ -1.07
HDAC6-220ENST00000477528 RPS29P62273 56 aaKnown RBP8.36□□□□□ -1.07
HDAC6-220ENST00000477528 RBM12B-AS1Q9P1G2 102 aa8.36□□□□□ -1.07
HDAC6-220ENST00000477528 LCA10Q71F78 164 aa8.35□□□□□ -1.07
HDAC6-220ENST00000477528 A0A1B0GU33 70 aa8.34□□□□□ -1.07
HDAC6-220ENST00000477528 KRTAP21-3Q3LHN1 58 aa8.31□□□□□ -1.08
HDAC6-220ENST00000477528 Q5VSD8 79 aa8.31□□□□□ -1.08
HDAC6-220ENST00000477528 Q6ZSA8 131 aa8.3□□□□□ -1.08
HDAC6-220ENST00000477528 FBN1P35555 2871 aaKnown RBP8.25□□□□□ -1.09
HDAC6-220ENST00000477528 A0A0D9SG42 100 aa8.23□□□□□ -1.09
HDAC6-220ENST00000477528 CUBNO60494 3623 aa8.21□□□□□ -1.09
HDAC6-220ENST00000477528 COX6B2Q6YFQ2 88 aa8.21□□□□□ -1.1
HDAC6-220ENST00000477528 KRTAP1-4P0C5Y4 121 aa8.19□□□□□ -1.1
HDAC6-220ENST00000477528 S4R3F8 94 aa8.19□□□□□ -1.1
HDAC6-220ENST00000477528 CRIPTQ9P021 101 aa8.15□□□□□ -1.1
HDAC6-220ENST00000477528 VPS13CQ709C8 3753 aa8.14□□□□□ -1.11
HDAC6-220ENST00000477528 DMBT1Q9UGM3 2413 aaPredicted RBP8.14□□□□□ -1.11
HDAC6-220ENST00000477528 ZFHX3Q15911 3703 aa8.13□□□□□ -1.11
HDAC6-220ENST00000477528 PKD1L1Q8TDX9 2849 aa8.13□□□□□ -1.11
HDAC6-220ENST00000477528 TRRAPQ9Y4A5 3859 aa8.13□□□□□ -1.11
HDAC6-220ENST00000477528 SPINT4Q6UDR6 99 aa8.13□□□□□ -1.11
HDAC6-220ENST00000477528 CSAG1Q6PB30 78 aa8.12□□□□□ -1.11
HDAC6-220ENST00000477528 SPATA8Q6RVD6 105 aa8.12□□□□□ -1.11
HDAC6-220ENST00000477528 PRAC1Q96KF2 57 aa8.1□□□□□ -1.11
HDAC6-220ENST00000477528 H1FX-AS1Q4G0G2 97 aa8.09□□□□□ -1.11
HDAC6-220ENST00000477528 LINC01554Q52M75 96 aa8.07□□□□□ -1.12
HDAC6-220ENST00000477528 A8MUU9 505 aa8.05□□□□□ -1.12
HDAC6-220ENST00000477528 TGP01266 2768 aa8.04□□□□□ -1.12
HDAC6-220ENST00000477528 A8MU10 97 aa8.04□□□□□ -1.12
HDAC6-220ENST00000477528 C20orf166-AS1Q96NR2 134 aa8.04□□□□□ -1.12
HDAC6-220ENST00000477528 A6NN06 94 aa8.03□□□□□ -1.12
HDAC6-220ENST00000477528 TENM2Q9NT68 2774 aa8.02□□□□□ -1.13
HDAC6-220ENST00000477528 SEC61BP60468 96 aaKnown RBP8.01□□□□□ -1.13
HDAC6-220ENST00000477528 KRTAP16-1A8MUX0 517 aa8□□□□□ -1.13
HDAC6-220ENST00000477528 ZNF469Q96JG9 3925 aaPredicted RBP7.98□□□□□ -1.13
HDAC6-220ENST00000477528 RPL37P61927 97 aaKnown RBP7.98□□□□□ -1.13
HDAC6-220ENST00000477528 KRTAP13-3Q3SY46 172 aa7.92□□□□□ -1.14
HDAC6-220ENST00000477528 AKAP9Q99996 3911 aa7.91□□□□□ -1.14
HDAC6-220ENST00000477528 FLG2Q5D862 2391 aaPredicted RBP7.89□□□□□ -1.15
HDAC6-220ENST00000477528 ROMO1P60602 79 aa7.87□□□□□ -1.15
HDAC6-220ENST00000477528 R4GN34 69 aa7.87□□□□□ -1.15
HDAC6-220ENST00000477528 ADM2Q7Z4H4 148 aa7.86□□□□□ -1.15
HDAC6-220ENST00000477528 HUWE1Q7Z6Z7 4374 aaKnown RBP7.82□□□□□ -1.16
HDAC6-220ENST00000477528 CAMK2N1Q7Z7J9 78 aa7.81□□□□□ -1.16
HDAC6-220ENST00000477528 A0A1B0GVY2 172 aa7.8□□□□□ -1.16
HDAC6-220ENST00000477528 M0QZ58 72 aa7.78□□□□□ -1.16
HDAC6-220ENST00000477528 XP32Q5T750 250 aa7.76□□□□□ -1.17
HDAC6-220ENST00000477528 MEGF8Q7Z7M0 2845 aa7.72□□□□□ -1.17
HDAC6-220ENST00000477528 FBN3Q75N90 2809 aa7.7□□□□□ -1.18
HDAC6-220ENST00000477528 SRRM2Q9UQ35 2752 aaKnown RBP7.7□□□□□ -1.18
HDAC6-220ENST00000477528 M0R2T5 61 aa7.68□□□□□ -1.18
HDAC6-220ENST00000477528 KRTAP25-1Q3LHN0 102 aa7.66□□□□□ -1.18
HDAC6-220ENST00000477528 KRTAP10-8P60410 259 aa7.64□□□□□ -1.19
HDAC6-220ENST00000477528 H0YAA0 97 aa7.62□□□□□ -1.19
HDAC6-220ENST00000477528 TPRXLQ17RH7 258 aa7.59□□□□□ -1.19
HDAC6-220ENST00000477528 DNAH9Q9NYC9 4486 aa7.56□□□□□ -1.2
HDAC6-220ENST00000477528 LUZP6Q538Z0 58 aa7.5□□□□□ -1.21
HDAC6-220ENST00000477528 KRTAP3-1Q9BYR8 98 aa7.43□□□□□ -1.22
HDAC6-220ENST00000477528 P0C880 135 aa7.39□□□□□ -1.23
HDAC6-220ENST00000477528 PLECQ15149 4684 aaKnown RBP7.39□□□□□ -1.23
HDAC6-220ENST00000477528 H3BS24 57 aa7.38□□□□□ -1.23
HDAC6-220ENST00000477528 PLAC4Q8WY50 150 aa7.37□□□□□ -1.23
HDAC6-220ENST00000477528 COL7A1Q02388 2944 aa7.34□□□□□ -1.23
HDAC6-220ENST00000477528 DNAH1Q9P2D7 4330 aa7.34□□□□□ -1.23
HDAC6-220ENST00000477528 CSMD3Q7Z407 3707 aa7.33□□□□□ -1.24
HDAC6-220ENST00000477528 KRTAP10-4P60372 401 aaPredicted RBP7.33□□□□□ -1.24
HDAC6-220ENST00000477528 ALMS1Q8TCU4 4167 aa7.3□□□□□ -1.24
HDAC6-220ENST00000477528 DNAH10Q8IVF4 4471 aa7.29□□□□□ -1.24
HDAC6-220ENST00000477528 VPS13DQ5THJ4 4388 aa7.29□□□□□ -1.24
HDAC6-220ENST00000477528 C10orf95Q9H7T3 257 aa7.24□□□□□ -1.25
HDAC6-220ENST00000477528 DNAH17Q9UFH2 4485 aa7.22□□□□□ -1.25
HDAC6-220ENST00000477528 MT1HL1P0DM35 61 aa7.17□□□□□ -1.26
HDAC6-220ENST00000477528 DNAH3Q8TD57 4116 aa7.17□□□□□ -1.26
HDAC6-220ENST00000477528 TNP1P09430 55 aa7.16□□□□□ -1.26
HDAC6-220ENST00000477528 STARD9Q9P2P6 4700 aa7.16□□□□□ -1.26
HDAC6-220ENST00000477528 DNAH11Q96DT5 4516 aa7.15□□□□□ -1.26
HDAC6-220ENST00000477528 ANK2Q01484 3957 aa7.14□□□□□ -1.27
HDAC6-220ENST00000477528 KRTAP10-6P60371 365 aaPredicted RBP7.14□□□□□ -1.27
HDAC6-220ENST00000477528 DNAH5Q8TE73 4624 aa7.13□□□□□ -1.27
HDAC6-220ENST00000477528 KRTAP12-2P59991 146 aa7.12□□□□□ -1.27
HDAC6-220ENST00000477528 PP632Q6XCG6 107 aa7.11□□□□□ -1.27
HDAC6-220ENST00000477528 A0A0A0MQY5 61 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms