RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 C8orf17Q9NRJ1 99 aa9.79□□□□□ -0.84
TMEM53-208ENST00000476724 SPANXA2-OT1Q8N9U9 137 aa9.78□□□□□ -0.84
TMEM53-208ENST00000476724 C1orf64Q8NEQ6 169 aa9.78□□□□□ -0.84
TMEM53-208ENST00000476724 ANAPC11Q9NYG5 84 aa9.78□□□□□ -0.84
TMEM53-208ENST00000476724 PKHD1P08F94 4074 aa9.78□□□□□ -0.84
TMEM53-208ENST00000476724 A0A1B0GVX0 72 aa9.78□□□□□ -0.84
TMEM53-208ENST00000476724 Q6ZSA8 131 aa9.78□□□□□ -0.84
TMEM53-208ENST00000476724 CD164Q04900 197 aa9.75□□□□□ -0.85
TMEM53-208ENST00000476724 SSBP3-AS1Q7Z2R9 100 aa9.74□□□□□ -0.85
TMEM53-208ENST00000476724 LRP1BQ9NZR2 4599 aa9.74□□□□□ -0.85
TMEM53-208ENST00000476724 IGHV6-1A0A0B4J1U7 121 aa9.73□□□□□ -0.85
TMEM53-208ENST00000476724 LINC00336Q6ZUF6 198 aa9.71□□□□□ -0.85
TMEM53-208ENST00000476724 MPLKIPQ8TAP9 179 aa9.7□□□□□ -0.86
TMEM53-208ENST00000476724 PRR4Q16378 134 aa9.7□□□□□ -0.86
TMEM53-208ENST00000476724 MRPL34Q9BQ48 92 aaKnown RBP9.7□□□□□ -0.86
TMEM53-208ENST00000476724 A0A1B0GVY2 172 aa9.69□□□□□ -0.86
TMEM53-208ENST00000476724 DYNC1H1Q14204 4646 aaKnown RBP9.69□□□□□ -0.86
TMEM53-208ENST00000476724 Q1T7F1 81 aa9.66□□□□□ -0.86
TMEM53-208ENST00000476724 NDUFS5O43920 106 aa9.65□□□□□ -0.87
TMEM53-208ENST00000476724 VPS13BQ7Z7G8 4022 aa9.64□□□□□ -0.87
TMEM53-208ENST00000476724 IGLV7-46A0A075B6I9 117 aa9.63□□□□□ -0.87
TMEM53-208ENST00000476724 RYR3Q15413 4870 aa9.62□□□□□ -0.87
TMEM53-208ENST00000476724 SPINK6Q6UWN8 80 aa9.61□□□□□ -0.87
TMEM53-208ENST00000476724 A0A087X002 238 aa9.6□□□□□ -0.87
TMEM53-208ENST00000476724 NOTCH2NLQ7Z3S9 236 aa9.6□□□□□ -0.87
TMEM53-208ENST00000476724 C8orf87E5RJ46 101 aa9.59□□□□□ -0.87
TMEM53-208ENST00000476724 PRO0628Q9UI54 55 aa9.59□□□□□ -0.87
TMEM53-208ENST00000476724 V9GYY9 64 aa9.59□□□□□ -0.87
TMEM53-208ENST00000476724 APOBP04114 4563 aaKnown RBP9.58□□□□□ -0.88
TMEM53-208ENST00000476724 PCOTHQ58A44 107 aa9.55□□□□□ -0.88
TMEM53-208ENST00000476724 LOC101927531A0A1B0GV80 90 aa9.53□□□□□ -0.88
TMEM53-208ENST00000476724 KRTAP13-2Q52LG2 175 aa9.53□□□□□ -0.88
TMEM53-208ENST00000476724 C1orf195Q5TG92 126 aa9.52□□□□□ -0.88
TMEM53-208ENST00000476724 SMR3BP02814 79 aaPredicted RBP9.51□□□□□ -0.89
TMEM53-208ENST00000476724 BRK1Q8WUW1 75 aa9.5□□□□□ -0.89
TMEM53-208ENST00000476724 LCE2BO14633 110 aa9.49□□□□□ -0.89
TMEM53-208ENST00000476724 LINC00313P59037 77 aa9.49□□□□□ -0.89
TMEM53-208ENST00000476724 COA5Q86WW8 74 aa9.49□□□□□ -0.89
TMEM53-208ENST00000476724 KRTAP1-4P0C5Y4 121 aa9.47□□□□□ -0.89
TMEM53-208ENST00000476724 KRTAP13-3Q3SY46 172 aa9.47□□□□□ -0.89
TMEM53-208ENST00000476724 LIMD2Q9BT23 127 aa9.47□□□□□ -0.89
TMEM53-208ENST00000476724 Q5W150 140 aa9.46□□□□□ -0.89
TMEM53-208ENST00000476724 FAT1Q14517 4588 aa9.46□□□□□ -0.89
TMEM53-208ENST00000476724 Q8N9P0 234 aaPredicted RBP9.46□□□□□ -0.9
TMEM53-208ENST00000476724 PSPHP1O15172 72 aa9.44□□□□□ -0.9
TMEM53-208ENST00000476724 FAM229AH3BQW9 127 aa9.41□□□□□ -0.9
TMEM53-208ENST00000476724 PLA2G1BP04054 148 aaKnown RBP9.4□□□□□ -0.9
TMEM53-208ENST00000476724 C4orf48Q5BLP8 95 aa9.4□□□□□ -0.9
TMEM53-208ENST00000476724 A8MUN3 132 aa9.4□□□□□ -0.91
TMEM53-208ENST00000476724 KRTAP10-4P60372 401 aaPredicted RBP9.38□□□□□ -0.91
TMEM53-208ENST00000476724 SPINK1P00995 79 aa9.37□□□□□ -0.91
TMEM53-208ENST00000476724 TYMSOSQ8TAI1 123 aa9.37□□□□□ -0.91
TMEM53-208ENST00000476724 HRES1P13985 223 aa9.36□□□□□ -0.91
TMEM53-208ENST00000476724 Q5VV11 94 aa9.35□□□□□ -0.91
TMEM53-208ENST00000476724 KRTAP16-1A8MUX0 517 aa9.34□□□□□ -0.91
TMEM53-208ENST00000476724 HSPG2P98160 4391 aa9.32□□□□□ -0.92
TMEM53-208ENST00000476724 PRR15LQ9BU68 103 aa9.32□□□□□ -0.92
TMEM53-208ENST00000476724 ACYP2P14621 99 aa9.3□□□□□ -0.92
TMEM53-208ENST00000476724 RPS29P62273 56 aaKnown RBP9.3□□□□□ -0.92
TMEM53-208ENST00000476724 LINC01558Q9Y6Z2 57 aa9.3□□□□□ -0.92
TMEM53-208ENST00000476724 IGKV2-30P06310 120 aa9.3□□□□□ -0.92
TMEM53-208ENST00000476724 RYR1P21817 5038 aa9.29□□□□□ -0.92
TMEM53-208ENST00000476724 EPPK1P58107 5090 aaKnown RBP9.28□□□□□ -0.92
TMEM53-208ENST00000476724 SPAG11AQ6PDA7 123 aa9.28□□□□□ -0.92
TMEM53-208ENST00000476724 Q75L30 129 aa9.28□□□□□ -0.92
TMEM53-208ENST00000476724 CHKB-CPT1BH3BT56 60 aa9.27□□□□□ -0.93
TMEM53-208ENST00000476724 J3QL48 77 aa9.27□□□□□ -0.93
TMEM53-208ENST00000476724 PKHD1L1Q86WI1 4243 aa9.26□□□□□ -0.93
TMEM53-208ENST00000476724 PRR26Q8N8Z3 221 aa9.26□□□□□ -0.93
TMEM53-208ENST00000476724 DMAC1Q96GE9 116 aa9.25□□□□□ -0.93
TMEM53-208ENST00000476724 LINC00304Q8N9R0 145 aa9.25□□□□□ -0.93
TMEM53-208ENST00000476724 RETNLBQ9BQ08 111 aa9.24□□□□□ -0.93
TMEM53-208ENST00000476724 KRTAP17-1Q9BYP8 105 aa9.22□□□□□ -0.93
TMEM53-208ENST00000476724 KIAA1109Q2LD37 5005 aa9.2□□□□□ -0.94
TMEM53-208ENST00000476724 Q5VSD8 79 aa9.19□□□□□ -0.94
TMEM53-208ENST00000476724 A6NED7 52 aa9.16□□□□□ -0.94
TMEM53-208ENST00000476724 IGKV2D-30A0A075B6S6 120 aa9.13□□□□□ -0.95
TMEM53-208ENST00000476724 LRP1Q07954 4544 aaKnown RBP9.11□□□□□ -0.95
TMEM53-208ENST00000476724 CDC42SE1Q9NRR8 79 aa9.09□□□□□ -0.95
TMEM53-208ENST00000476724 LCA10Q71F78 164 aa9.08□□□□□ -0.96
TMEM53-208ENST00000476724 TNXBP22105 4242 aa9.08□□□□□ -0.96
TMEM53-208ENST00000476724 C7orf65Q6ZTY9 151 aa9.07□□□□□ -0.96
TMEM53-208ENST00000476724 A8MU10 97 aa9.06□□□□□ -0.96
TMEM53-208ENST00000476724 ATP11AUNQ6ZP68 121 aa9.06□□□□□ -0.96
TMEM53-208ENST00000476724 FAT3Q8TDW7 4589 aa9.04□□□□□ -0.96
TMEM53-208ENST00000476724 Q8N1X5 172 aa9.02□□□□□ -0.97
TMEM53-208ENST00000476724 C20orf166-AS1Q96NR2 134 aa9.01□□□□□ -0.97
TMEM53-208ENST00000476724 SPINK7P58062 85 aa9□□□□□ -0.97
TMEM53-208ENST00000476724 PMAIP1Q13794 54 aa9□□□□□ -0.97
TMEM53-208ENST00000476724 A8MUU9 505 aa9□□□□□ -0.97
TMEM53-208ENST00000476724 A0A1B0GU69 56 aa8.98□□□□□ -0.97
TMEM53-208ENST00000476724 FLG2Q5D862 2391 aaPredicted RBP8.98□□□□□ -0.97
TMEM53-208ENST00000476724 KRTAP10-8P60410 259 aa8.97□□□□□ -0.97
TMEM53-208ENST00000476724 SPTSSBQ8NFR3 76 aa8.96□□□□□ -0.97
TMEM53-208ENST00000476724 MYCBP2O75592 4640 aa8.95□□□□□ -0.98
TMEM53-208ENST00000476724 C9orf92A6NGG3 77 aa8.94□□□□□ -0.98
TMEM53-208ENST00000476724 KRTAP4-5Q9BYR2 181 aa8.9□□□□□ -0.98
TMEM53-208ENST00000476724 LCE2CQ5TA81 110 aa8.9□□□□□ -0.99
TMEM53-208ENST00000476724 MT1HL1P0DM35 61 aa8.86□□□□□ -0.99
TMEM53-208ENST00000476724 A6NN06 94 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms