RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 PRAC1Q96KF2 57 aa7.21□□□□□ -1.25
U2AF1-209ENST00000475639 R4GN34 69 aa7.19□□□□□ -1.26
U2AF1-209ENST00000475639 TEP1Q99973 2627 aaKnown RBP7.18□□□□□ -1.26
U2AF1-209ENST00000475639 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.15□□□□□ -1.26
U2AF1-209ENST00000475639 KRTAP29-1A8MX34 341 aaPredicted RBP7.14□□□□□ -1.27
U2AF1-209ENST00000475639 ANK3Q12955 4377 aaKnown RBP7.13□□□□□ -1.27
U2AF1-209ENST00000475639 KRTAP4-16G5E9R7 235 aaPredicted RBP7.13□□□□□ -1.27
U2AF1-209ENST00000475639 KRTAP26-1Q6PEX3 210 aa7.12□□□□□ -1.27
U2AF1-209ENST00000475639 RPL37P61927 97 aaKnown RBP7.12□□□□□ -1.27
U2AF1-209ENST00000475639 CASC10Q5T4H9 136 aa7.11□□□□□ -1.27
U2AF1-209ENST00000475639 HELZ2Q9BYK8 2649 aaKnown RBP7.11□□□□□ -1.27
U2AF1-209ENST00000475639 KRTAP10-11P60412 298 aa7.09□□□□□ -1.27
U2AF1-209ENST00000475639 PLAC8Q9NZF1 115 aa7.09□□□□□ -1.27
U2AF1-209ENST00000475639 S4R3F8 94 aa7.08□□□□□ -1.28
U2AF1-209ENST00000475639 SPRR1AP35321 89 aa7.07□□□□□ -1.28
U2AF1-209ENST00000475639 H1FX-AS1Q4G0G2 97 aa7.06□□□□□ -1.28
U2AF1-209ENST00000475639 VWFP04275 2813 aa7.06□□□□□ -1.28
U2AF1-209ENST00000475639 MMP24-AS1A0A0U1RRL7 71 aa7.06□□□□□ -1.28
U2AF1-209ENST00000475639 ROMO1P60602 79 aa7.05□□□□□ -1.28
U2AF1-209ENST00000475639 FLNAP21333 2647 aaKnown RBP7.05□□□□□ -1.28
U2AF1-209ENST00000475639 CSMD3Q7Z407 3707 aa7.03□□□□□ -1.28
U2AF1-209ENST00000475639 IGSF10Q6WRI0 2623 aa7.03□□□□□ -1.28
U2AF1-209ENST00000475639 KRTAP16-1A8MUX0 517 aa7.03□□□□□ -1.28
U2AF1-209ENST00000475639 PKD1L1Q8TDX9 2849 aa7.02□□□□□ -1.28
U2AF1-209ENST00000475639 KRTAP7-1Q8IUC3 87 aa7.02□□□□□ -1.29
U2AF1-209ENST00000475639 HIVEP1P15822 2718 aa7.02□□□□□ -1.29
U2AF1-209ENST00000475639 TRRAPQ9Y4A5 3859 aa7□□□□□ -1.29
U2AF1-209ENST00000475639 Q5W150 140 aa7□□□□□ -1.29
U2AF1-209ENST00000475639 PLAC4Q8WY50 150 aa7□□□□□ -1.29
U2AF1-209ENST00000475639 SEC61BP60468 96 aaKnown RBP7□□□□□ -1.29
U2AF1-209ENST00000475639 ADM2Q7Z4H4 148 aa7□□□□□ -1.29
U2AF1-209ENST00000475639 SRRM2Q9UQ35 2752 aaKnown RBP6.97□□□□□ -1.29
U2AF1-209ENST00000475639 TENM2Q9NT68 2774 aa6.97□□□□□ -1.29
U2AF1-209ENST00000475639 M0QZ58 72 aa6.97□□□□□ -1.29
U2AF1-209ENST00000475639 LINC00472Q9H8W2 130 aa6.95□□□□□ -1.3
U2AF1-209ENST00000475639 ASB16-AS1Q495Z4 193 aa6.94□□□□□ -1.3
U2AF1-209ENST00000475639 UBR5O95071 2799 aaPredicted RBP6.94□□□□□ -1.3
U2AF1-209ENST00000475639 SPRR1BP22528 89 aa6.91□□□□□ -1.3
U2AF1-209ENST00000475639 KMT2BQ9UMN6 2715 aaPredicted RBP6.9□□□□□ -1.31
U2AF1-209ENST00000475639 KRTAP10-3P60369 221 aa6.89□□□□□ -1.31
U2AF1-209ENST00000475639 KRTAP1-3Q8IUG1 177 aa6.88□□□□□ -1.31
U2AF1-209ENST00000475639 NSD1Q96L73 2696 aaPredicted RBP6.88□□□□□ -1.31
U2AF1-209ENST00000475639 Q6ZR54 194 aa6.87□□□□□ -1.31
U2AF1-209ENST00000475639 PDZD2O15018 2839 aa6.85□□□□□ -1.31
U2AF1-209ENST00000475639 FBN1P35555 2871 aaKnown RBP6.85□□□□□ -1.31
U2AF1-209ENST00000475639 DNAH1Q9P2D7 4330 aa6.82□□□□□ -1.32
U2AF1-209ENST00000475639 TENM1Q9UKZ4 2725 aa6.81□□□□□ -1.32
U2AF1-209ENST00000475639 ALMS1Q8TCU4 4167 aa6.81□□□□□ -1.32
U2AF1-209ENST00000475639 TENM3Q9P273 2699 aa6.78□□□□□ -1.32
U2AF1-209ENST00000475639 SPATA8Q6RVD6 105 aa6.77□□□□□ -1.32
U2AF1-209ENST00000475639 PANO1I0J062 215 aa6.77□□□□□ -1.33
U2AF1-209ENST00000475639 KRTAP11-1Q8IUC1 163 aa6.76□□□□□ -1.33
U2AF1-209ENST00000475639 C20orf166-AS1Q96NR2 134 aa6.76□□□□□ -1.33
U2AF1-209ENST00000475639 ANK2Q01484 3957 aa6.75□□□□□ -1.33
U2AF1-209ENST00000475639 COL7A1Q02388 2944 aa6.75□□□□□ -1.33
U2AF1-209ENST00000475639 KRTAP1-1Q07627 177 aa6.75□□□□□ -1.33
U2AF1-209ENST00000475639 A0A087X002 238 aa6.74□□□□□ -1.33
U2AF1-209ENST00000475639 DNAH10Q8IVF4 4471 aa6.73□□□□□ -1.33
U2AF1-209ENST00000475639 NDUFAF8A1L188 74 aa6.71□□□□□ -1.33
U2AF1-209ENST00000475639 NOTCH2NLQ7Z3S9 236 aa6.71□□□□□ -1.34
U2AF1-209ENST00000475639 LYSTQ99698 3801 aa6.71□□□□□ -1.34
U2AF1-209ENST00000475639 KRTAP25-1Q3LHN0 102 aa6.7□□□□□ -1.34
U2AF1-209ENST00000475639 Q5VSD8 79 aa6.67□□□□□ -1.34
U2AF1-209ENST00000475639 KRTAP13-3Q3SY46 172 aa6.67□□□□□ -1.34
U2AF1-209ENST00000475639 TENM4Q6N022 2769 aa6.65□□□□□ -1.35
U2AF1-209ENST00000475639 ITPR2Q14571 2701 aa6.63□□□□□ -1.35
U2AF1-209ENST00000475639 A8MUU9 505 aa6.59□□□□□ -1.35
U2AF1-209ENST00000475639 KRTAP13-1Q8IUC0 172 aa6.58□□□□□ -1.36
U2AF1-209ENST00000475639 KRTAP10-1P60331 282 aa6.58□□□□□ -1.36
U2AF1-209ENST00000475639 DNAH9Q9NYC9 4486 aa6.58□□□□□ -1.36
U2AF1-209ENST00000475639 TNP1P09430 55 aa6.57□□□□□ -1.36
U2AF1-209ENST00000475639 KRTAP1-5Q9BYS1 174 aa6.56□□□□□ -1.36
U2AF1-209ENST00000475639 FRAS1Q86XX4 4008 aa6.51□□□□□ -1.37
U2AF1-209ENST00000475639 C10orf95Q9H7T3 257 aa6.5□□□□□ -1.37
U2AF1-209ENST00000475639 KRTAP10-2P60368 255 aa6.5□□□□□ -1.37
U2AF1-209ENST00000475639 MEGF8Q7Z7M0 2845 aa6.45□□□□□ -1.38
U2AF1-209ENST00000475639 DNAH8Q96JB1 4490 aa6.45□□□□□ -1.38
U2AF1-209ENST00000475639 RPS29P62273 56 aaKnown RBP6.43□□□□□ -1.38
U2AF1-209ENST00000475639 CMYA5Q8N3K9 4069 aa6.43□□□□□ -1.38
U2AF1-209ENST00000475639 PP632Q6XCG6 107 aa6.42□□□□□ -1.38
U2AF1-209ENST00000475639 DNAH7Q8WXX0 4024 aa6.39□□□□□ -1.39
U2AF1-209ENST00000475639 P0C880 135 aa6.38□□□□□ -1.39
U2AF1-209ENST00000475639 H0YAA0 97 aa6.38□□□□□ -1.39
U2AF1-209ENST00000475639 HUWE1Q7Z6Z7 4374 aaKnown RBP6.38□□□□□ -1.39
U2AF1-209ENST00000475639 DNAH3Q8TD57 4116 aa6.37□□□□□ -1.39
U2AF1-209ENST00000475639 DNAH17Q9UFH2 4485 aa6.33□□□□□ -1.4
U2AF1-209ENST00000475639 TGP01266 2768 aa6.3□□□□□ -1.4
U2AF1-209ENST00000475639 KRTAP10-8P60410 259 aa6.27□□□□□ -1.41
U2AF1-209ENST00000475639 HECTD4Q9Y4D8 3996 aa6.27□□□□□ -1.41
U2AF1-209ENST00000475639 Q6ZRN7 208 aaPredicted RBP6.25□□□□□ -1.41
U2AF1-209ENST00000475639 VPS13DQ5THJ4 4388 aa6.23□□□□□ -1.41
U2AF1-209ENST00000475639 KRTAP13-2Q52LG2 175 aa6.21□□□□□ -1.41
U2AF1-209ENST00000475639 PLECQ15149 4684 aaKnown RBP6.2□□□□□ -1.42
U2AF1-209ENST00000475639 KMT2AQ03164 3969 aa6.18□□□□□ -1.42
U2AF1-209ENST00000475639 DYNC2H1Q8NCM8 4307 aaKnown RBP6.15□□□□□ -1.42
U2AF1-209ENST00000475639 FBN3Q75N90 2809 aa6.11□□□□□ -1.43
U2AF1-209ENST00000475639 DNAH2Q9P225 4427 aa6.08□□□□□ -1.44
U2AF1-209ENST00000475639 TPRXLQ17RH7 258 aa6.07□□□□□ -1.44
U2AF1-209ENST00000475639 PRO2289Q9P1D8 64 aa6.07□□□□□ -1.44
U2AF1-209ENST00000475639 KRTAP3-1Q9BYR8 98 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms