RNA–Protein interactions for RNA: ENST00000474617.1

CCM2-206, Transcript of CCM2 scaffold protein, humanhuman

TSL 5 BASIC

Gene CCM2, Length 1,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-206ENST00000474617 IGHV6-1A0A0B4J1U7 121 aa12.67□□□□□ -0.38
CCM2-206ENST00000474617 C4orf48Q5BLP8 95 aa12.66□□□□□ -0.38
CCM2-206ENST00000474617 VPS13BQ7Z7G8 4022 aa12.64□□□□□ -0.39
CCM2-206ENST00000474617 SPINK1P00995 79 aa12.63□□□□□ -0.39
CCM2-206ENST00000474617 RPS29P62273 56 aaKnown RBP12.63□□□□□ -0.39
CCM2-206ENST00000474617 TYMSOSQ8TAI1 123 aa12.63□□□□□ -0.39
CCM2-206ENST00000474617 MRPL34Q9BQ48 92 aaKnown RBP12.62□□□□□ -0.39
CCM2-206ENST00000474617 TRAV22A0A0B4J277 110 aa12.61□□□□□ -0.39
CCM2-206ENST00000474617 H0Y9P7 68 aa12.61□□□□□ -0.39
CCM2-206ENST00000474617 SPAG11AQ6PDA7 123 aa12.61□□□□□ -0.39
CCM2-206ENST00000474617 SERP1Q9Y6X1 66 aa12.61□□□□□ -0.39
CCM2-206ENST00000474617 PKHD1P08F94 4074 aa12.6□□□□□ -0.39
CCM2-206ENST00000474617 DYNC1H1Q14204 4646 aaKnown RBP12.57□□□□□ -0.4
CCM2-206ENST00000474617 RYR2Q92736 4967 aa12.56□□□□□ -0.4
CCM2-206ENST00000474617 C1orf195Q5TG92 126 aa12.56□□□□□ -0.4
CCM2-206ENST00000474617 LINC00208Q96KT6 92 aa12.53□□□□□ -0.4
CCM2-206ENST00000474617 LINC00313P59037 77 aa12.49□□□□□ -0.41
CCM2-206ENST00000474617 LINC00304Q8N9R0 145 aa12.49□□□□□ -0.41
CCM2-206ENST00000474617 C1orf64Q8NEQ6 169 aa12.49□□□□□ -0.41
CCM2-206ENST00000474617 NDUFS5O43920 106 aa12.48□□□□□ -0.41
CCM2-206ENST00000474617 SMR3BP02814 79 aaPredicted RBP12.48□□□□□ -0.41
CCM2-206ENST00000474617 KRTAP10-4P60372 401 aaPredicted RBP12.48□□□□□ -0.41
CCM2-206ENST00000474617 SPANXA2-OT1Q8N9U9 137 aa12.47□□□□□ -0.41
CCM2-206ENST00000474617 CYP4F30PQ9H0H9 118 aa12.44□□□□□ -0.42
CCM2-206ENST00000474617 NOTCH2NLQ7Z3S9 236 aa12.43□□□□□ -0.42
CCM2-206ENST00000474617 PRR26Q8N8Z3 221 aa12.42□□□□□ -0.42
CCM2-206ENST00000474617 APOBP04114 4563 aaKnown RBP12.42□□□□□ -0.42
CCM2-206ENST00000474617 FAM229AH3BQW9 127 aa12.42□□□□□ -0.42
CCM2-206ENST00000474617 KMT2CQ8NEZ4 4911 aaKnown RBP12.39□□□□□ -0.43
CCM2-206ENST00000474617 Q8N9P0 234 aaPredicted RBP12.39□□□□□ -0.43
CCM2-206ENST00000474617 LOC101927531A0A1B0GV80 90 aa12.37□□□□□ -0.43
CCM2-206ENST00000474617 SMIM26A0A096LP01 95 aa12.34□□□□□ -0.43
CCM2-206ENST00000474617 OXTP01178 125 aa12.33□□□□□ -0.44
CCM2-206ENST00000474617 KRTAP13-3Q3SY46 172 aa12.29□□□□□ -0.44
CCM2-206ENST00000474617 KRTAP16-1A8MUX0 517 aa12.28□□□□□ -0.44
CCM2-206ENST00000474617 IGLV7-46A0A075B6I9 117 aa12.27□□□□□ -0.44
CCM2-206ENST00000474617 PKHD1L1Q86WI1 4243 aa12.22□□□□□ -0.45
CCM2-206ENST00000474617 Q5W150 140 aa12.2□□□□□ -0.46
CCM2-206ENST00000474617 FAT1Q14517 4588 aa12.19□□□□□ -0.46
CCM2-206ENST00000474617 Q5VSD8 79 aa12.18□□□□□ -0.46
CCM2-206ENST00000474617 PCOTHQ58A44 107 aa12.15□□□□□ -0.46
CCM2-206ENST00000474617 RYR3Q15413 4870 aa12.14□□□□□ -0.47
CCM2-206ENST00000474617 PRR4Q16378 134 aa12.11□□□□□ -0.47
CCM2-206ENST00000474617 IGKV2-30P06310 120 aa12.1□□□□□ -0.47
CCM2-206ENST00000474617 KRTAP10-8P60410 259 aa12.09□□□□□ -0.47
CCM2-206ENST00000474617 FP248Q71RG6 208 aaPredicted RBP12.08□□□□□ -0.48
CCM2-206ENST00000474617 V9GYY9 64 aa12.05□□□□□ -0.48
CCM2-206ENST00000474617 C20orf166-AS1Q96NR2 134 aa12.02□□□□□ -0.48
CCM2-206ENST00000474617 HSPG2P98160 4391 aa12.01□□□□□ -0.49
CCM2-206ENST00000474617 Q1T7F1 81 aa12.01□□□□□ -0.49
CCM2-206ENST00000474617 A8MUU9 505 aa12□□□□□ -0.49
CCM2-206ENST00000474617 COA5Q86WW8 74 aa11.99□□□□□ -0.49
CCM2-206ENST00000474617 Q8N1X5 172 aa11.99□□□□□ -0.49
CCM2-206ENST00000474617 RYR1P21817 5038 aa11.96□□□□□ -0.49
CCM2-206ENST00000474617 HRES1P13985 223 aa11.95□□□□□ -0.5
CCM2-206ENST00000474617 ACYP2P14621 99 aa11.95□□□□□ -0.5
CCM2-206ENST00000474617 C4orf26Q17RF5 130 aa11.95□□□□□ -0.5
CCM2-206ENST00000474617 C7orf65Q6ZTY9 151 aa11.93□□□□□ -0.5
CCM2-206ENST00000474617 FLG2Q5D862 2391 aaPredicted RBP11.93□□□□□ -0.5
CCM2-206ENST00000474617 DMAC1Q96GE9 116 aa11.92□□□□□ -0.5
CCM2-206ENST00000474617 RETNLBQ9BQ08 111 aa11.92□□□□□ -0.5
CCM2-206ENST00000474617 MPLKIPQ8TAP9 179 aa11.9□□□□□ -0.5
CCM2-206ENST00000474617 IGKV2D-30A0A075B6S6 120 aa11.89□□□□□ -0.51
CCM2-206ENST00000474617 Q75L30 129 aa11.88□□□□□ -0.51
CCM2-206ENST00000474617 C9orf92A6NGG3 77 aa11.86□□□□□ -0.51
CCM2-206ENST00000474617 TNXBP22105 4242 aa11.85□□□□□ -0.51
CCM2-206ENST00000474617 A8MUN3 132 aa11.81□□□□□ -0.52
CCM2-206ENST00000474617 CHKB-CPT1BH3BT56 60 aa11.74□□□□□ -0.53
CCM2-206ENST00000474617 MT1HL1P0DM35 61 aa11.74□□□□□ -0.53
CCM2-206ENST00000474617 FAT3Q8TDW7 4589 aa11.74□□□□□ -0.53
CCM2-206ENST00000474617 EPPK1P58107 5090 aaKnown RBP11.71□□□□□ -0.53
CCM2-206ENST00000474617 LRP1Q07954 4544 aaKnown RBP11.7□□□□□ -0.54
CCM2-206ENST00000474617 LINC01558Q9Y6Z2 57 aa11.7□□□□□ -0.54
CCM2-206ENST00000474617 KRTAP17-1Q9BYP8 105 aa11.69□□□□□ -0.54
CCM2-206ENST00000474617 KIAA1109Q2LD37 5005 aa11.67□□□□□ -0.54
CCM2-206ENST00000474617 ATP11AUNQ6ZP68 121 aa11.66□□□□□ -0.54
CCM2-206ENST00000474617 RPL37P61927 97 aaKnown RBP11.64□□□□□ -0.55
CCM2-206ENST00000474617 SPINK7P58062 85 aa11.62□□□□□ -0.55
CCM2-206ENST00000474617 PSPHP1O15172 72 aa11.61□□□□□ -0.55
CCM2-206ENST00000474617 DMBT1Q9UGM3 2413 aaPredicted RBP11.61□□□□□ -0.55
CCM2-206ENST00000474617 PRR15LQ9BU68 103 aa11.59□□□□□ -0.55
CCM2-206ENST00000474617 XP32Q5T750 250 aa11.56□□□□□ -0.56
CCM2-206ENST00000474617 Q5VV11 94 aa11.56□□□□□ -0.56
CCM2-206ENST00000474617 SPTSSBQ8NFR3 76 aa11.55□□□□□ -0.56
CCM2-206ENST00000474617 PRO0628Q9UI54 55 aa11.54□□□□□ -0.56
CCM2-206ENST00000474617 TPRXLQ17RH7 258 aa11.52□□□□□ -0.57
CCM2-206ENST00000474617 SVIPQ8NHG7 77 aa11.51□□□□□ -0.57
CCM2-206ENST00000474617 BRK1Q8WUW1 75 aa11.49□□□□□ -0.57
CCM2-206ENST00000474617 MYCBP2O75592 4640 aa11.46□□□□□ -0.58
CCM2-206ENST00000474617 COX6B2Q6YFQ2 88 aa11.45□□□□□ -0.58
CCM2-206ENST00000474617 BIRC6Q9NR09 4857 aa11.44□□□□□ -0.58
CCM2-206ENST00000474617 A0A1B0GU69 56 aa11.37□□□□□ -0.59
CCM2-206ENST00000474617 A6NED7 52 aa11.35□□□□□ -0.59
CCM2-206ENST00000474617 KRTAP3-1Q9BYR8 98 aa11.35□□□□□ -0.59
CCM2-206ENST00000474617 KRTAP4-5Q9BYR2 181 aa11.34□□□□□ -0.59
CCM2-206ENST00000474617 SEC61GP60059 68 aa11.29□□□□□ -0.6
CCM2-206ENST00000474617 J3QL48 77 aa11.27□□□□□ -0.61
CCM2-206ENST00000474617 CDC42SE1Q9NRR8 79 aa11.27□□□□□ -0.61
CCM2-206ENST00000474617 HERC2O95714 4834 aa11.22□□□□□ -0.61
CCM2-206ENST00000474617 UQCR11O14957 56 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms