RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SSPOA2VEC9 5147 aa9.47□□□□□ -0.89
CCDC88B-206ENST00000473405 DEFB116Q30KQ4 102 aa9.47□□□□□ -0.89
CCDC88B-206ENST00000473405 SPCS1Q9Y6A9 102 aa9.47□□□□□ -0.89
CCDC88B-206ENST00000473405 TMEM256-PLSCR3K7ERE1 68 aa9.46□□□□□ -0.9
CCDC88B-206ENST00000473405 CCKP06307 115 aa9.46□□□□□ -0.9
CCDC88B-206ENST00000473405 K7EP34 96 aa9.44□□□□□ -0.9
CCDC88B-206ENST00000473405 MPLKIPQ8TAP9 179 aa9.43□□□□□ -0.9
CCDC88B-206ENST00000473405 HRES1P13985 223 aa9.42□□□□□ -0.9
CCDC88B-206ENST00000473405 UBE2V1Q13404 147 aa9.42□□□□□ -0.9
CCDC88B-206ENST00000473405 IGHV6-1A0A0B4J1U7 121 aa9.41□□□□□ -0.9
CCDC88B-206ENST00000473405 PRO0461Q9UI25 63 aa9.4□□□□□ -0.9
CCDC88B-206ENST00000473405 C9JAW5 83 aa9.39□□□□□ -0.91
CCDC88B-206ENST00000473405 FAM236DA0A1B0GTK5 79 aa9.38□□□□□ -0.91
CCDC88B-206ENST00000473405 MT2AP02795 61 aa9.38□□□□□ -0.91
CCDC88B-206ENST00000473405 BAALC-AS2P0C853 105 aa9.38□□□□□ -0.91
CCDC88B-206ENST00000473405 FAM236CP0DP71 79 aa9.38□□□□□ -0.91
CCDC88B-206ENST00000473405 SMCPP49901 116 aaPredicted RBP9.37□□□□□ -0.91
CCDC88B-206ENST00000473405 MTURNQ8N3F0 131 aa9.37□□□□□ -0.91
CCDC88B-206ENST00000473405 A0A1B0GV90 55 aa9.36□□□□□ -0.91
CCDC88B-206ENST00000473405 A0A1B0GVX0 72 aa9.35□□□□□ -0.91
CCDC88B-206ENST00000473405 H3BT86 120 aa9.35□□□□□ -0.91
CCDC88B-206ENST00000473405 VPS25Q9BRG1 176 aa9.35□□□□□ -0.91
CCDC88B-206ENST00000473405 GTF2H5Q6ZYL4 71 aa9.34□□□□□ -0.91
CCDC88B-206ENST00000473405 RBM12B-AS1Q9P1G2 102 aa9.34□□□□□ -0.91
CCDC88B-206ENST00000473405 RBM3P98179 157 aaKnown RBP9.33□□□□□ -0.92
CCDC88B-206ENST00000473405 C8orf87E5RJ46 101 aa9.32□□□□□ -0.92
CCDC88B-206ENST00000473405 MT1FP04733 61 aa9.31□□□□□ -0.92
CCDC88B-206ENST00000473405 DSCR8Q96T75 97 aa9.3□□□□□ -0.92
CCDC88B-206ENST00000473405 FCGBPQ9Y6R7 5405 aaPredicted RBP9.28□□□□□ -0.92
CCDC88B-206ENST00000473405 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.27□□□□□ -0.93
CCDC88B-206ENST00000473405 ZCCHC13Q8WW36 166 aaKnown RBP9.26□□□□□ -0.93
CCDC88B-206ENST00000473405 F8W1H4 67 aa9.25□□□□□ -0.93
CCDC88B-206ENST00000473405 J3KT08 172 aa9.25□□□□□ -0.93
CCDC88B-206ENST00000473405 Q6ZQT0 140 aa9.25□□□□□ -0.93
CCDC88B-206ENST00000473405 LCE2BO14633 110 aa9.24□□□□□ -0.93
CCDC88B-206ENST00000473405 JMJD7-PLA2G4BH0Y9G9 81 aa9.23□□□□□ -0.93
CCDC88B-206ENST00000473405 KRTAP9-3Q9BYQ3 159 aa9.23□□□□□ -0.93
CCDC88B-206ENST00000473405 C21orf62-AS1Q17RA5 79 aa9.22□□□□□ -0.93
CCDC88B-206ENST00000473405 KRTAP10-10P60014 251 aa9.21□□□□□ -0.94
CCDC88B-206ENST00000473405 SPINK7P58062 85 aa9.2□□□□□ -0.94
CCDC88B-206ENST00000473405 Q8N9P0 234 aaPredicted RBP9.2□□□□□ -0.94
CCDC88B-206ENST00000473405 LOC110117498A0A087WWA1 95 aa9.19□□□□□ -0.94
CCDC88B-206ENST00000473405 KRTAP9-7A8MTY7 169 aa9.18□□□□□ -0.94
CCDC88B-206ENST00000473405 C14orf132Q9NPU4 83 aa9.18□□□□□ -0.94
CCDC88B-206ENST00000473405 ETDBQ3ZM63 59 aa9.16□□□□□ -0.94
CCDC88B-206ENST00000473405 A8MWP4 228 aa9.15□□□□□ -0.94
CCDC88B-206ENST00000473405 NDUFB1O75438 58 aa9.15□□□□□ -0.94
CCDC88B-206ENST00000473405 C8orf17Q9NRJ1 99 aa9.15□□□□□ -0.94
CCDC88B-206ENST00000473405 KRTAP19-1Q8IUB9 90 aa9.14□□□□□ -0.95
CCDC88B-206ENST00000473405 IGKV3D-7A0A0C4DH55 119 aa9.13□□□□□ -0.95
CCDC88B-206ENST00000473405 A0A1B0GW54 56 aa9.12□□□□□ -0.95
CCDC88B-206ENST00000473405 PDE6GP18545 87 aa9.12□□□□□ -0.95
CCDC88B-206ENST00000473405 WFDC13Q8IUB5 93 aa9.1□□□□□ -0.95
CCDC88B-206ENST00000473405 Q6ZVQ6 151 aa9.07□□□□□ -0.96
CCDC88B-206ENST00000473405 PRR15Q8IV56 129 aa9.05□□□□□ -0.96
CCDC88B-206ENST00000473405 MACF1Q9UPN3 7388 aaKnown RBP9.02□□□□□ -0.96
CCDC88B-206ENST00000473405 MMP24-AS1A0A0U1RRL7 71 aa9.02□□□□□ -0.97
CCDC88B-206ENST00000473405 SYNE2Q8WXH0 6885 aaKnown RBP9.01□□□□□ -0.97
CCDC88B-206ENST00000473405 NREPQ16612 68 aa9□□□□□ -0.97
CCDC88B-206ENST00000473405 TMEM254Q8TBM7 123 aa8.98□□□□□ -0.97
CCDC88B-206ENST00000473405 MRPL34Q9BQ48 92 aaKnown RBP8.97□□□□□ -0.97
CCDC88B-206ENST00000473405 K7EQZ3 153 aa8.95□□□□□ -0.98
CCDC88B-206ENST00000473405 LINC00846Q9NV44 126 aa8.95□□□□□ -0.98
CCDC88B-206ENST00000473405 KRTAP19-6Q3LI70 58 aa8.93□□□□□ -0.98
CCDC88B-206ENST00000473405 FAM240AA0A1B0GVK7 77 aa8.92□□□□□ -0.98
CCDC88B-206ENST00000473405 hDV103S1A0JD37 113 aa8.92□□□□□ -0.98
CCDC88B-206ENST00000473405 H1FX-AS1Q4G0G2 97 aa8.89□□□□□ -0.99
CCDC88B-206ENST00000473405 NDUFS5O43920 106 aa8.87□□□□□ -0.99
CCDC88B-206ENST00000473405 ACYP1P07311 99 aa8.87□□□□□ -0.99
CCDC88B-206ENST00000473405 Q5W150 140 aa8.84□□□□□ -0.99
CCDC88B-206ENST00000473405 UBL5Q9BZL1 73 aa8.83□□□□□ -1
CCDC88B-206ENST00000473405 IGKV2D-30A0A075B6S6 120 aa8.82□□□□□ -1
CCDC88B-206ENST00000473405 BPY2O14599 106 aa8.82□□□□□ -1
CCDC88B-206ENST00000473405 IGKV2-30P06310 120 aa8.82□□□□□ -1
CCDC88B-206ENST00000473405 J3QR89 54 aa8.8□□□□□ -1
CCDC88B-206ENST00000473405 C7orf65Q6ZTY9 151 aa8.8□□□□□ -1
CCDC88B-206ENST00000473405 Q8N9L7 120 aa8.79□□□□□ -1
CCDC88B-206ENST00000473405 CASC2Q6XLA1 102 aa8.75□□□□□ -1.01
CCDC88B-206ENST00000473405 K7ERU9 68 aa8.74□□□□□ -1.01
CCDC88B-206ENST00000473405 CXCL6P80162 114 aa8.73□□□□□ -1.01
CCDC88B-206ENST00000473405 HCG22E2RYF7 251 aa8.72□□□□□ -1.01
CCDC88B-206ENST00000473405 C4orf26Q17RF5 130 aa8.71□□□□□ -1.02
CCDC88B-206ENST00000473405 LINC00643Q86TS7 51 aa8.71□□□□□ -1.02
CCDC88B-206ENST00000473405 ATP5EP2Q5VTU8 51 aa8.69□□□□□ -1.02
CCDC88B-206ENST00000473405 KRTAP3-1Q9BYR8 98 aa8.61□□□□□ -1.03
CCDC88B-206ENST00000473405 C5orf47Q569G3 176 aa8.59□□□□□ -1.03
CCDC88B-206ENST00000473405 KRTAP6-3Q3LI67 103 aa8.58□□□□□ -1.04
CCDC88B-206ENST00000473405 MT-ATP8P03928 68 aa8.56□□□□□ -1.04
CCDC88B-206ENST00000473405 A0A087WVE0 104 aa8.53□□□□□ -1.04
CCDC88B-206ENST00000473405 S4R3F8 94 aa8.53□□□□□ -1.04
CCDC88B-206ENST00000473405 FAM236AA0A1B0GUQ0 79 aa8.51□□□□□ -1.05
CCDC88B-206ENST00000473405 FAM236BA0A1B0GV22 79 aa8.51□□□□□ -1.05
CCDC88B-206ENST00000473405 HIST1H4AP62805 103 aaKnown RBP8.51□□□□□ -1.05
CCDC88B-206ENST00000473405 LCA10Q71F78 164 aa8.51□□□□□ -1.05
CCDC88B-206ENST00000473405 MT1BP07438 61 aa8.5□□□□□ -1.05
CCDC88B-206ENST00000473405 C1orf64Q8NEQ6 169 aa8.5□□□□□ -1.05
CCDC88B-206ENST00000473405 IMUPQ9GZP8 106 aa8.49□□□□□ -1.05
CCDC88B-206ENST00000473405 SPRR2GQ9BYE4 73 aa8.47□□□□□ -1.05
CCDC88B-206ENST00000473405 CSAG1Q6PB30 78 aa8.46□□□□□ -1.06
CCDC88B-206ENST00000473405 KRTAP19-8Q3LI54 63 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 220.8 ms