RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 HSBP1L1C9JCN9 74 aa8.29□□□□□ -1.08
SHH-205ENST00000472308 KRTAP19-8Q3LI54 63 aa8.29□□□□□ -1.08
SHH-205ENST00000472308 LYRM7Q5U5X0 104 aa8.25□□□□□ -1.09
SHH-205ENST00000472308 IGKV3D-7A0A0C4DH55 119 aa8.23□□□□□ -1.09
SHH-205ENST00000472308 ORMDL1Q9P0S3 153 aa8.23□□□□□ -1.09
SHH-205ENST00000472308 TRIAP1O43715 76 aa8.22□□□□□ -1.09
SHH-205ENST00000472308 SPRR2GQ9BYE4 73 aa8.22□□□□□ -1.09
SHH-205ENST00000472308 J3KT08 172 aa8.21□□□□□ -1.1
SHH-205ENST00000472308 COX8AP10176 69 aa8.21□□□□□ -1.1
SHH-205ENST00000472308 VPS25Q9BRG1 176 aa8.2□□□□□ -1.1
SHH-205ENST00000472308 C8orf17Q9NRJ1 99 aa8.2□□□□□ -1.1
SHH-205ENST00000472308 DSCR8Q96T75 97 aa8.19□□□□□ -1.1
SHH-205ENST00000472308 DNAL4O96015 105 aa8.18□□□□□ -1.1
SHH-205ENST00000472308 HIST1H2BLQ99880 126 aa8.18□□□□□ -1.1
SHH-205ENST00000472308 TMEM256-PLSCR3K7ERE1 68 aa8.17□□□□□ -1.1
SHH-205ENST00000472308 FAM236AA0A1B0GUQ0 79 aa8.16□□□□□ -1.1
SHH-205ENST00000472308 FAM236BA0A1B0GV22 79 aa8.16□□□□□ -1.1
SHH-205ENST00000472308 H3BQ85 93 aa8.16□□□□□ -1.1
SHH-205ENST00000472308 DLEU1O43261 78 aa8.16□□□□□ -1.1
SHH-205ENST00000472308 PRO1854Q9UHT4 67 aa8.16□□□□□ -1.1
SHH-205ENST00000472308 HIST3H2BBQ8N257 126 aa8.15□□□□□ -1.1
SHH-205ENST00000472308 NDUFB1O75438 58 aa8.14□□□□□ -1.11
SHH-205ENST00000472308 SPRR2EP22531 72 aa8.14□□□□□ -1.11
SHH-205ENST00000472308 SPRR2BP35325 72 aa8.14□□□□□ -1.11
SHH-205ENST00000472308 SPRR2AP35326 72 aa8.14□□□□□ -1.11
SHH-205ENST00000472308 Q6ZVQ6 151 aa8.13□□□□□ -1.11
SHH-205ENST00000472308 UBE2V1Q13404 147 aa8.12□□□□□ -1.11
SHH-205ENST00000472308 SPRR2FQ96RM1 72 aa8.11□□□□□ -1.11
SHH-205ENST00000472308 KRTAP2-2Q9BYT5 123 aa8.11□□□□□ -1.11
SHH-205ENST00000472308 KRTAP2-1Q9BYU5 128 aa8.11□□□□□ -1.11
SHH-205ENST00000472308 HIGD1BQ9P298 99 aa8.11□□□□□ -1.11
SHH-205ENST00000472308 Q6ZQT0 140 aa8.1□□□□□ -1.11
SHH-205ENST00000472308 C2orf91Q6ZV80 131 aa8.1□□□□□ -1.11
SHH-205ENST00000472308 C5orf47Q569G3 176 aa8.09□□□□□ -1.11
SHH-205ENST00000472308 C14orf144Q96I85 54 aa8.08□□□□□ -1.12
SHH-205ENST00000472308 RBM3P98179 157 aaKnown RBP8.07□□□□□ -1.12
SHH-205ENST00000472308 CEND1Q8N111 149 aa8.07□□□□□ -1.12
SHH-205ENST00000472308 S100A2P29034 98 aa8.06□□□□□ -1.12
SHH-205ENST00000472308 FXYD2P54710 66 aa8.06□□□□□ -1.12
SHH-205ENST00000472308 IGKV2D-30A0A075B6S6 120 aa8.04□□□□□ -1.12
SHH-205ENST00000472308 IGKV2-30P06310 120 aa8.04□□□□□ -1.12
SHH-205ENST00000472308 C21orf62-AS1Q17RA5 79 aa8.03□□□□□ -1.12
SHH-205ENST00000472308 TMEM238LA0A1B0GVL6 79 aa8.02□□□□□ -1.13
SHH-205ENST00000472308 A6NJY4 79 aa8.02□□□□□ -1.13
SHH-205ENST00000472308 MMP24-AS1A0A0U1RRL7 71 aa8.01□□□□□ -1.13
SHH-205ENST00000472308 MRPL34Q9BQ48 92 aaKnown RBP8.01□□□□□ -1.13
SHH-205ENST00000472308 PRR15Q8IV56 129 aa8□□□□□ -1.13
SHH-205ENST00000472308 TMEM254Q8TBM7 123 aa8□□□□□ -1.13
SHH-205ENST00000472308 PSMB2P49721 201 aa7.99□□□□□ -1.13
SHH-205ENST00000472308 C4orf26Q17RF5 130 aa7.99□□□□□ -1.13
SHH-205ENST00000472308 C7orf65Q6ZTY9 151 aa7.99□□□□□ -1.13
SHH-205ENST00000472308 C9JAW5 83 aa7.98□□□□□ -1.13
SHH-205ENST00000472308 SMCPP49901 116 aaPredicted RBP7.98□□□□□ -1.13
SHH-205ENST00000472308 LCE1AQ5T7P2 110 aa7.98□□□□□ -1.13
SHH-205ENST00000472308 IMUPQ9GZP8 106 aa7.98□□□□□ -1.13
SHH-205ENST00000472308 K7ERJ3 54 aa7.97□□□□□ -1.13
SHH-205ENST00000472308 Q5W150 140 aa7.96□□□□□ -1.14
SHH-205ENST00000472308 GPR98Q8WXG9 6306 aa7.96□□□□□ -1.14
SHH-205ENST00000472308 KLKP1Q107X0 134 aa7.95□□□□□ -1.14
SHH-205ENST00000472308 PAM16Q9Y3D7 125 aa7.95□□□□□ -1.14
SHH-205ENST00000472308 NDUFS5O43920 106 aa7.93□□□□□ -1.14
SHH-205ENST00000472308 COX6CP09669 75 aa7.93□□□□□ -1.14
SHH-205ENST00000472308 SPATA45Q537H7 98 aa7.93□□□□□ -1.14
SHH-205ENST00000472308 KRTAP3-1Q9BYR8 98 aa7.91□□□□□ -1.14
SHH-205ENST00000472308 CSAG1Q6PB30 78 aa7.9□□□□□ -1.14
SHH-205ENST00000472308 S4R3F8 94 aa7.9□□□□□ -1.14
SHH-205ENST00000472308 hDV103S1A0JD37 113 aa7.89□□□□□ -1.15
SHH-205ENST00000472308 LCA10Q71F78 164 aa7.88□□□□□ -1.15
SHH-205ENST00000472308 SPRR2DP22532 72 aa7.87□□□□□ -1.15
SHH-205ENST00000472308 A0A1B0GW54 56 aa7.85□□□□□ -1.15
SHH-205ENST00000472308 BAALC-AS2P0C853 105 aa7.85□□□□□ -1.15
SHH-205ENST00000472308 KRTAP8-1Q8IUC2 63 aa7.84□□□□□ -1.15
SHH-205ENST00000472308 K7EQZ3 153 aa7.83□□□□□ -1.16
SHH-205ENST00000472308 LOC110117498A0A087WWA1 95 aa7.82□□□□□ -1.16
SHH-205ENST00000472308 S100A6P06703 90 aa7.81□□□□□ -1.16
SHH-205ENST00000472308 VAMP8Q9BV40 100 aa7.81□□□□□ -1.16
SHH-205ENST00000472308 HSD52Q0P140 79 aa7.78□□□□□ -1.16
SHH-205ENST00000472308 NREPQ16612 68 aa7.77□□□□□ -1.17
SHH-205ENST00000472308 SCGB1C2P0DMR2 95 aa7.76□□□□□ -1.17
SHH-205ENST00000472308 CRIPTQ9P021 101 aa7.76□□□□□ -1.17
SHH-205ENST00000472308 MT1XP80297 61 aa7.75□□□□□ -1.17
SHH-205ENST00000472308 JMJD7-PLA2G4BH0Y9G9 81 aa7.74□□□□□ -1.17
SHH-205ENST00000472308 KRTAP3-3Q9BYR6 98 aa7.74□□□□□ -1.17
SHH-205ENST00000472308 LCE3BQ5TA77 95 aa7.72□□□□□ -1.17
SHH-205ENST00000472308 C1orf64Q8NEQ6 169 aa7.72□□□□□ -1.17
SHH-205ENST00000472308 C14orf132Q9NPU4 83 aa7.72□□□□□ -1.17
SHH-205ENST00000472308 PDE6GP18545 87 aa7.71□□□□□ -1.18
SHH-205ENST00000472308 HCG22E2RYF7 251 aa7.69□□□□□ -1.18
SHH-205ENST00000472308 PRO2289Q9P1D8 64 aa7.69□□□□□ -1.18
SHH-205ENST00000472308 S100A1P23297 94 aa7.67□□□□□ -1.18
SHH-205ENST00000472308 KRTAP12-2P59991 146 aa7.65□□□□□ -1.18
SHH-205ENST00000472308 KRTAP4-8A0A0G2JLE6 195 aa7.64□□□□□ -1.19
SHH-205ENST00000472308 CASC2Q6XLA1 102 aa7.64□□□□□ -1.19
SHH-205ENST00000472308 KRTAP4-8Q9BYQ9 185 aa7.64□□□□□ -1.19
SHH-205ENST00000472308 CXCL6P80162 114 aa7.63□□□□□ -1.19
SHH-205ENST00000472308 ATXN8Q156A1 80 aa7.61□□□□□ -1.19
SHH-205ENST00000472308 Q8N9L7 120 aa7.61□□□□□ -1.19
SHH-205ENST00000472308 BPY2O14599 106 aa7.58□□□□□ -1.2
SHH-205ENST00000472308 DSTQ03001 7570 aaKnown RBP7.56□□□□□ -1.2
SHH-205ENST00000472308 A0A087WVE0 104 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms