RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.58□□□□□ -1.68
USF1-204ENST00000472217 SCGB1C2P0DMR2 95 aa4.58□□□□□ -1.68
USF1-204ENST00000472217 KRTAP4-12Q9BQ66 201 aa4.58□□□□□ -1.68
USF1-204ENST00000472217 RBM3P98179 157 aaKnown RBP4.57□□□□□ -1.68
USF1-204ENST00000472217 FSIP2Q5CZC0 6907 aa4.56□□□□□ -1.68
USF1-204ENST00000472217 DSCR8Q96T75 97 aa4.56□□□□□ -1.68
USF1-204ENST00000472217 A0A1B0GVX0 72 aa4.55□□□□□ -1.68
USF1-204ENST00000472217 BAALC-AS2P0C853 105 aa4.55□□□□□ -1.68
USF1-204ENST00000472217 KRTAP19-1Q8IUB9 90 aa4.55□□□□□ -1.68
USF1-204ENST00000472217 C8orf87E5RJ46 101 aa4.54□□□□□ -1.68
USF1-204ENST00000472217 SMIM6P0DI80 62 aa4.54□□□□□ -1.68
USF1-204ENST00000472217 KRTAP9-8Q9BYQ0 159 aa4.54□□□□□ -1.68
USF1-204ENST00000472217 FAM236DA0A1B0GTK5 79 aa4.53□□□□□ -1.68
USF1-204ENST00000472217 C9JAW5 83 aa4.53□□□□□ -1.68
USF1-204ENST00000472217 FAM236CP0DP71 79 aa4.53□□□□□ -1.68
USF1-204ENST00000472217 HRES1P13985 223 aa4.53□□□□□ -1.68
USF1-204ENST00000472217 MPLKIPQ8TAP9 179 aa4.53□□□□□ -1.68
USF1-204ENST00000472217 NAA38Q9BRA0 125 aaKnown RBP4.53□□□□□ -1.68
USF1-204ENST00000472217 C21orf62-AS1Q17RA5 79 aa4.52□□□□□ -1.69
USF1-204ENST00000472217 Q6ZQT0 140 aa4.52□□□□□ -1.69
USF1-204ENST00000472217 J3KT08 172 aa4.51□□□□□ -1.69
USF1-204ENST00000472217 M0R143 59 aa4.51□□□□□ -1.69
USF1-204ENST00000472217 ATXN8Q156A1 80 aa4.51□□□□□ -1.69
USF1-204ENST00000472217 RBM12B-AS1Q9P1G2 102 aa4.5□□□□□ -1.69
USF1-204ENST00000472217 JMJD7-PLA2G4BH0Y9G9 81 aa4.49□□□□□ -1.69
USF1-204ENST00000472217 ZCCHC13Q8WW36 166 aaKnown RBP4.49□□□□□ -1.69
USF1-204ENST00000472217 LOC110117498A0A087WWA1 95 aa4.48□□□□□ -1.69
USF1-204ENST00000472217 NDUFB1O75438 58 aa4.48□□□□□ -1.69
USF1-204ENST00000472217 MT2AP02795 61 aa4.48□□□□□ -1.69
USF1-204ENST00000472217 A0A1B0GW54 56 aa4.47□□□□□ -1.69
USF1-204ENST00000472217 TSTD3H0UI37 97 aa4.47□□□□□ -1.69
USF1-204ENST00000472217 C14orf132Q9NPU4 83 aa4.47□□□□□ -1.69
USF1-204ENST00000472217 Q8N9P0 234 aaPredicted RBP4.46□□□□□ -1.7
USF1-204ENST00000472217 C8orf17Q9NRJ1 99 aa4.46□□□□□ -1.7
USF1-204ENST00000472217 IGKV3D-7A0A0C4DH55 119 aa4.45□□□□□ -1.7
USF1-204ENST00000472217 LOC105371267A0A1B0GV96 52 aa4.45□□□□□ -1.7
USF1-204ENST00000472217 A8MWP4 228 aa4.45□□□□□ -1.7
USF1-204ENST00000472217 PDE6GP18545 87 aa4.45□□□□□ -1.7
USF1-204ENST00000472217 SPINK7P58062 85 aa4.45□□□□□ -1.7
USF1-204ENST00000472217 MT1FP04733 61 aa4.44□□□□□ -1.7
USF1-204ENST00000472217 LYRM7Q5U5X0 104 aa4.44□□□□□ -1.7
USF1-204ENST00000472217 MTURNQ8N3F0 131 aa4.43□□□□□ -1.7
USF1-204ENST00000472217 BATFQ16520 125 aa4.42□□□□□ -1.7
USF1-204ENST00000472217 USH2AO75445 5202 aa4.41□□□□□ -1.7
USF1-204ENST00000472217 C9orf118A6NHY6 69 aa4.41□□□□□ -1.7
USF1-204ENST00000472217 KRTAP10-10P60014 251 aa4.41□□□□□ -1.7
USF1-204ENST00000472217 NREPQ16612 68 aa4.41□□□□□ -1.7
USF1-204ENST00000472217 Q6ZVQ6 151 aa4.41□□□□□ -1.7
USF1-204ENST00000472217 WFDC13Q8IUB5 93 aa4.41□□□□□ -1.7
USF1-204ENST00000472217 PRR15Q8IV56 129 aa4.41□□□□□ -1.7
USF1-204ENST00000472217 MMP24-AS1A0A0U1RRL7 71 aa4.4□□□□□ -1.71
USF1-204ENST00000472217 KRTAP9-3Q9BYQ3 159 aa4.4□□□□□ -1.71
USF1-204ENST00000472217 H3BT86 120 aa4.38□□□□□ -1.71
USF1-204ENST00000472217 TMEM254Q8TBM7 123 aa4.38□□□□□ -1.71
USF1-204ENST00000472217 MRPL34Q9BQ48 92 aaKnown RBP4.38□□□□□ -1.71
USF1-204ENST00000472217 KRTAP9-9Q9BYP9 154 aa4.38□□□□□ -1.71
USF1-204ENST00000472217 KRTAP9-4Q9BYQ2 154 aa4.38□□□□□ -1.71
USF1-204ENST00000472217 A0A1W2PPM0 123 aa4.37□□□□□ -1.71
USF1-204ENST00000472217 K7EQZ3 153 aa4.37□□□□□ -1.71
USF1-204ENST00000472217 TAX1BP3O14907 124 aa4.37□□□□□ -1.71
USF1-204ENST00000472217 SSPOA2VEC9 5147 aa4.37□□□□□ -1.71
USF1-204ENST00000472217 hDV103S1A0JD37 113 aa4.35□□□□□ -1.71
USF1-204ENST00000472217 NDUFS5O43920 106 aa4.34□□□□□ -1.71
USF1-204ENST00000472217 KRTAP9-7A8MTY7 169 aa4.32□□□□□ -1.72
USF1-204ENST00000472217 BPY2O14599 106 aa4.32□□□□□ -1.72
USF1-204ENST00000472217 KRTAP4-8A0A0G2JLE6 195 aa4.31□□□□□ -1.72
USF1-204ENST00000472217 Q8N9L7 120 aa4.31□□□□□ -1.72
USF1-204ENST00000472217 IGKV2D-30A0A075B6S6 120 aa4.3□□□□□ -1.72
USF1-204ENST00000472217 IGKV2-30P06310 120 aa4.3□□□□□ -1.72
USF1-204ENST00000472217 H1FX-AS1Q4G0G2 97 aa4.3□□□□□ -1.72
USF1-204ENST00000472217 Q5W150 140 aa4.3□□□□□ -1.72
USF1-204ENST00000472217 SPCS1Q9Y6A9 102 aa4.3□□□□□ -1.72
USF1-204ENST00000472217 LCE1DQ5T752 114 aa4.29□□□□□ -1.72
USF1-204ENST00000472217 FCGBPQ9Y6R7 5405 aaPredicted RBP4.29□□□□□ -1.72
USF1-204ENST00000472217 COL5A1-AS1Q5SY13 56 aa4.28□□□□□ -1.72
USF1-204ENST00000472217 CASC2Q6XLA1 102 aa4.28□□□□□ -1.72
USF1-204ENST00000472217 C7orf65Q6ZTY9 151 aa4.28□□□□□ -1.72
USF1-204ENST00000472217 HCG22E2RYF7 251 aa4.27□□□□□ -1.73
USF1-204ENST00000472217 LINC00846Q9NV44 126 aa4.25□□□□□ -1.73
USF1-204ENST00000472217 KRTAP19-6Q3LI70 58 aa4.24□□□□□ -1.73
USF1-204ENST00000472217 PRO0461Q9UI25 63 aa4.24□□□□□ -1.73
USF1-204ENST00000472217 CXCL6P80162 114 aa4.23□□□□□ -1.73
USF1-204ENST00000472217 C4orf26Q17RF5 130 aa4.23□□□□□ -1.73
USF1-204ENST00000472217 UBL5Q9BZL1 73 aa4.23□□□□□ -1.73
USF1-204ENST00000472217 K7EP34 96 aa4.22□□□□□ -1.73
USF1-204ENST00000472217 LCE4AQ5TA78 99 aa4.22□□□□□ -1.73
USF1-204ENST00000472217 PCP4L1A6NKN8 68 aa4.19□□□□□ -1.74
USF1-204ENST00000472217 GTF2H5Q6ZYL4 71 aa4.19□□□□□ -1.74
USF1-204ENST00000472217 KRTAP3-1Q9BYR8 98 aa4.17□□□□□ -1.74
USF1-204ENST00000472217 C5orf47Q569G3 176 aa4.16□□□□□ -1.74
USF1-204ENST00000472217 KRTAP4-7Q9BYR0 210 aa4.16□□□□□ -1.74
USF1-204ENST00000472217 F8W1H4 67 aa4.15□□□□□ -1.75
USF1-204ENST00000472217 C1orf64Q8NEQ6 169 aa4.14□□□□□ -1.75
USF1-204ENST00000472217 TP53AIP1Q9HCN2 124 aa4.14□□□□□ -1.75
USF1-204ENST00000472217 S4R3F8 94 aa4.14□□□□□ -1.75
USF1-204ENST00000472217 ETDBQ3ZM63 59 aa4.13□□□□□ -1.75
USF1-204ENST00000472217 FAM236AA0A1B0GUQ0 79 aa4.12□□□□□ -1.75
USF1-204ENST00000472217 FAM236BA0A1B0GV22 79 aa4.12□□□□□ -1.75
USF1-204ENST00000472217 LCA10Q71F78 164 aa4.12□□□□□ -1.75
USF1-204ENST00000472217 CSAG1Q6PB30 78 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 152.5 ms