RNA–Protein interactions for RNA: ENST00000471987.1

CD46-213, Transcript of CD46 molecule, humanhuman

TSL 3

Gene CD46, Length 572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-213ENST00000471987 LAMA1P25391 3075 aa1.43□□□□□ -2.18
CD46-213ENST00000471987 NIPBLQ6KC79 2804 aaeCLIP1.42□□□□□ -2.18
CD46-213ENST00000471987 NDUFA1O15239 70 aa1.42□□□□□ -2.18
CD46-213ENST00000471987 LINC00158P58513 81 aa1.42□□□□□ -2.18
CD46-213ENST00000471987 Q6ZRX8 168 aa1.42□□□□□ -2.18
CD46-213ENST00000471987 SSBP3-AS1Q7Z2R9 100 aa1.42□□□□□ -2.18
CD46-213ENST00000471987 LINC00308Q8TCZ7 52 aa1.42□□□□□ -2.18
CD46-213ENST00000471987 PLAC4Q8WY50 150 aa1.42□□□□□ -2.18
CD46-213ENST00000471987 EP300Q09472 2414 aaPredicted RBP1.42□□□□□ -2.18
CD46-213ENST00000471987 DYNC2H1Q8NCM8 4307 aaKnown RBP1.42□□□□□ -2.18
CD46-213ENST00000471987 A0A096LNT2 108 aa1.41□□□□□ -2.18
CD46-213ENST00000471987 GVQW2A0A096LPI5 108 aaPredicted RBP1.41□□□□□ -2.18
CD46-213ENST00000471987 SPTY2D1-AS1A0A0U1RR47 76 aa1.41□□□□□ -2.18
CD46-213ENST00000471987 IAPPP10997 89 aa1.41□□□□□ -2.18
CD46-213ENST00000471987 CRIP1P50238 77 aa1.41□□□□□ -2.18
CD46-213ENST00000471987 HIVEP1P15822 2718 aa1.41□□□□□ -2.18
CD46-213ENST00000471987 MEGF8Q7Z7M0 2845 aa1.41□□□□□ -2.18
CD46-213ENST00000471987 F8P00451 2351 aa1.41□□□□□ -2.18
CD46-213ENST00000471987 Q8IZM0 81 aa1.4□□□□□ -2.19
CD46-213ENST00000471987 ARHGAP5-AS1Q96IT6 56 aa1.4□□□□□ -2.19
CD46-213ENST00000471987 ALMS1Q8TCU4 4167 aa1.4□□□□□ -2.19
CD46-213ENST00000471987 RTTNQ86VV8 2226 aa1.4□□□□□ -2.19
CD46-213ENST00000471987 DNAH1Q9P2D7 4330 aa1.39□□□□□ -2.19
CD46-213ENST00000471987 Q6ZRN7 208 aaPredicted RBP1.39□□□□□ -2.19
CD46-213ENST00000471987 RPS27LQ71UM5 84 aaKnown RBP1.39□□□□□ -2.19
CD46-213ENST00000471987 DOPEY2Q9Y3R5 2298 aa1.39□□□□□ -2.19
CD46-213ENST00000471987 TECTAO75443 2155 aa1.39□□□□□ -2.19
CD46-213ENST00000471987 ZNF469Q96JG9 3925 aaPredicted RBP1.39□□□□□ -2.19
CD46-213ENST00000471987 CDKN2A-AS1Q9UH64 79 aa1.38□□□□□ -2.19
CD46-213ENST00000471987 FAT4Q6V0I7 4981 aa1.37□□□□□ -2.19
CD46-213ENST00000471987 TLN2Q9Y4G6 2542 aa1.37□□□□□ -2.19
CD46-213ENST00000471987 LYNX1G3V0Z9 82 aa1.37□□□□□ -2.19
CD46-213ENST00000471987 PRB1P04280 392 aa1.37□□□□□ -2.19
CD46-213ENST00000471987 SPINK13Q1W4C9 94 aa1.37□□□□□ -2.19
CD46-213ENST00000471987 LINC01590Q5TEZ4 76 aa1.37□□□□□ -2.19
CD46-213ENST00000471987 CADP27708 2225 aa1.37□□□□□ -2.19
CD46-213ENST00000471987 DCHS2Q6V1P9 2916 aa1.37□□□□□ -2.19
CD46-213ENST00000471987 ABCA1O95477 2261 aa1.37□□□□□ -2.19
CD46-213ENST00000471987 NSD1Q96L73 2696 aaPredicted RBP1.36□□□□□ -2.19
CD46-213ENST00000471987 SVEP1Q4LDE5 3571 aa1.36□□□□□ -2.19
CD46-213ENST00000471987 URB1O60287 2271 aaKnown RBP1.36□□□□□ -2.19
CD46-213ENST00000471987 PTPRQQ9UMZ3 2332 aa1.36□□□□□ -2.19
CD46-213ENST00000471987 LINC00575Q6W349 94 aa1.35□□□□□ -2.19
CD46-213ENST00000471987 COX6B2Q6YFQ2 88 aa1.35□□□□□ -2.19
CD46-213ENST00000471987 TTTY10Q9BZA0 68 aa1.35□□□□□ -2.19
CD46-213ENST00000471987 APCP25054 2843 aa1.35□□□□□ -2.19
CD46-213ENST00000471987 CENPEQ02224 2701 aa1.35□□□□□ -2.19
CD46-213ENST00000471987 TENM2Q9NT68 2774 aa1.34□□□□□ -2.19
CD46-213ENST00000471987 LOC730098B7Z3J9 87 aa1.34□□□□□ -2.19
CD46-213ENST00000471987 K7EQZ3 153 aa1.34□□□□□ -2.19
CD46-213ENST00000471987 RPL37P61927 97 aaKnown RBP1.34□□□□□ -2.19
CD46-213ENST00000471987 TP53AIP1Q9HCN2 124 aa1.34□□□□□ -2.19
CD46-213ENST00000471987 CRIPTQ9P021 101 aa1.34□□□□□ -2.19
CD46-213ENST00000471987 KNTC1P50748 2209 aa1.34□□□□□ -2.2
CD46-213ENST00000471987 UBE2DNLQ8IWF7 75 aa1.33□□□□□ -2.2
CD46-213ENST00000471987 HECTD4Q9Y4D8 3996 aa1.32□□□□□ -2.2
CD46-213ENST00000471987 TRRAPQ9Y4A5 3859 aa1.32□□□□□ -2.2
CD46-213ENST00000471987 MXRA5Q9NR99 2828 aa1.32□□□□□ -2.2
CD46-213ENST00000471987 POLR2KP53803 58 aaKnown RBP1.32□□□□□ -2.2
CD46-213ENST00000471987 UNQ6190/PRO20217Q6UXQ8 127 aa1.32□□□□□ -2.2
CD46-213ENST00000471987 USMG5Q96IX5 58 aa1.32□□□□□ -2.2
CD46-213ENST00000471987 CMYA5Q8N3K9 4069 aa1.32□□□□□ -2.2
CD46-213ENST00000471987 PRB3Q04118 309 aaPredicted RBP1.31□□□□□ -2.2
CD46-213ENST00000471987 MINOS1Q5TGZ0 78 aa1.31□□□□□ -2.2
CD46-213ENST00000471987 MRPL34Q9BQ48 92 aaKnown RBP1.31□□□□□ -2.2
CD46-213ENST00000471987 C6orf48Q9UBA6 75 aa1.31□□□□□ -2.2
CD46-213ENST00000471987 ASXL3Q9C0F0 2248 aa1.31□□□□□ -2.2
CD46-213ENST00000471987 ANK3Q12955 4377 aaKnown RBP1.31□□□□□ -2.2
CD46-213ENST00000471987 MGAM2Q2M2H8 2515 aa1.3□□□□□ -2.2
CD46-213ENST00000471987 TENM3Q9P273 2699 aa1.3□□□□□ -2.2
CD46-213ENST00000471987 H0YAA0 97 aa1.3□□□□□ -2.2
CD46-213ENST00000471987 CCL22O00626 93 aa1.3□□□□□ -2.2
CD46-213ENST00000471987 FRAS1Q86XX4 4008 aa1.3□□□□□ -2.2
CD46-213ENST00000471987 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.29□□□□□ -2.22e-8■■■■■ 30.4
CD46-213ENST00000471987 I3L2K1 104 aa1.29□□□□□ -2.2
CD46-213ENST00000471987 LYNX1P0DP58 116 aa1.29□□□□□ -2.2
CD46-213ENST00000471987 RPL39P62891 51 aaKnown RBP1.29□□□□□ -2.2
CD46-213ENST00000471987 AHCTF1Q8WYP5 2266 aa1.29□□□□□ -2.2
CD46-213ENST00000471987 CACNA1EQ15878 2313 aa1.29□□□□□ -2.2
CD46-213ENST00000471987 ACANP16112 2415 aa1.28□□□□□ -2.2
CD46-213ENST00000471987 IGLV5-48A0A075B6I7 105 aa1.28□□□□□ -2.2
CD46-213ENST00000471987 PIGYQ3MUY2 71 aa1.28□□□□□ -2.2
CD46-213ENST00000471987 KMT2AQ03164 3969 aa1.28□□□□□ -2.2
CD46-213ENST00000471987 ICE1Q9Y2F5 2266 aa1.28□□□□□ -2.2
CD46-213ENST00000471987 H3BSH0 61 aa1.27□□□□□ -2.21
CD46-213ENST00000471987 PRCDQ00LT1 54 aa1.27□□□□□ -2.21
CD46-213ENST00000471987 PCOTHQ58A44 107 aa1.27□□□□□ -2.21
CD46-213ENST00000471987 RPL39LQ96EH5 51 aaKnown RBP1.27□□□□□ -2.21
CD46-213ENST00000471987 LYSTQ99698 3801 aa1.27□□□□□ -2.21
CD46-213ENST00000471987 GPR98Q8WXG9 6306 aa1.27□□□□□ -2.21
CD46-213ENST00000471987 RNF213Q63HN8 5207 aa1.27□□□□□ -2.21
CD46-213ENST00000471987 HMCN2Q8NDA2 5059 aa1.27□□□□□ -2.21
CD46-213ENST00000471987 CSPG4Q6UVK1 2322 aa1.27□□□□□ -2.21
CD46-213ENST00000471987 ASCC3Q8N3C0 2202 aaKnown RBP1.27□□□□□ -2.21
CD46-213ENST00000471987 COL6A6A6NMZ7 2263 aa1.26□□□□□ -2.21
CD46-213ENST00000471987 MAP1AP78559 2803 aaPredicted RBP1.25□□□□□ -2.21
CD46-213ENST00000471987 Q6ZSA8 131 aa1.25□□□□□ -2.21
CD46-213ENST00000471987 WFDC10BQ8IUB3 73 aa1.25□□□□□ -2.21
CD46-213ENST00000471987 WFDC13Q8IUB5 93 aa1.25□□□□□ -2.21
CD46-213ENST00000471987 WNK1Q9H4A3 2382 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms