RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 C21orf62-AS1Q17RA5 79 aa6.53□□□□□ -1.36
VPS13D-204ENST00000469054 LINC00472Q9H8W2 130 aa6.53□□□□□ -1.36
VPS13D-204ENST00000469054 A0A1B0GW54 56 aa6.52□□□□□ -1.37
VPS13D-204ENST00000469054 GTF2H5Q6ZYL4 71 aa6.52□□□□□ -1.37
VPS13D-204ENST00000469054 PRO0461Q9UI25 63 aa6.52□□□□□ -1.37
VPS13D-204ENST00000469054 IGKV4-1P06312 121 aa6.49□□□□□ -1.37
VPS13D-204ENST00000469054 SEC61BP60468 96 aaKnown RBP6.49□□□□□ -1.37
VPS13D-204ENST00000469054 RNF213Q63HN8 5207 aa6.48□□□□□ -1.37
VPS13D-204ENST00000469054 DEFB116Q30KQ4 102 aa6.48□□□□□ -1.37
VPS13D-204ENST00000469054 SIGMAR1Q99720 223 aa6.48□□□□□ -1.37
VPS13D-204ENST00000469054 F8W1H4 67 aa6.45□□□□□ -1.38
VPS13D-204ENST00000469054 J3KT08 172 aa6.44□□□□□ -1.38
VPS13D-204ENST00000469054 RPL37P61927 97 aaKnown RBP6.44□□□□□ -1.38
VPS13D-204ENST00000469054 MUC2Q02817 5179 aa6.43□□□□□ -1.38
VPS13D-204ENST00000469054 KRTAP9-9Q9BYP9 154 aa6.43□□□□□ -1.38
VPS13D-204ENST00000469054 KRTAP9-4Q9BYQ2 154 aa6.43□□□□□ -1.38
VPS13D-204ENST00000469054 DSCR10P59022 87 aa6.42□□□□□ -1.38
VPS13D-204ENST00000469054 NREPQ16612 68 aa6.42□□□□□ -1.38
VPS13D-204ENST00000469054 PCOTHQ58A44 107 aa6.42□□□□□ -1.38
VPS13D-204ENST00000469054 LINC00313P59037 77 aa6.41□□□□□ -1.38
VPS13D-204ENST00000469054 Q75L30 129 aa6.41□□□□□ -1.38
VPS13D-204ENST00000469054 IGHV6-1A0A0B4J1U7 121 aa6.4□□□□□ -1.38
VPS13D-204ENST00000469054 A0A1B0GVX0 72 aa6.39□□□□□ -1.39
VPS13D-204ENST00000469054 ETDBQ3ZM63 59 aa6.39□□□□□ -1.39
VPS13D-204ENST00000469054 NOTCH2NLQ7Z3S9 236 aa6.39□□□□□ -1.39
VPS13D-204ENST00000469054 NDUFB1O75438 58 aa6.38□□□□□ -1.39
VPS13D-204ENST00000469054 C20orf166-AS1Q96NR2 134 aa6.38□□□□□ -1.39
VPS13D-204ENST00000469054 KRTAP4-1Q9BYQ7 146 aa6.38□□□□□ -1.39
VPS13D-204ENST00000469054 A8MUU9 505 aa6.37□□□□□ -1.39
VPS13D-204ENST00000469054 A8MWP4 228 aa6.37□□□□□ -1.39
VPS13D-204ENST00000469054 C8orf87E5RJ46 101 aa6.37□□□□□ -1.39
VPS13D-204ENST00000469054 KRTAP16-1A8MUX0 517 aa6.36□□□□□ -1.39
VPS13D-204ENST00000469054 IGKV3D-7A0A0C4DH55 119 aa6.35□□□□□ -1.39
VPS13D-204ENST00000469054 ATP11AUNQ6ZP68 121 aa6.35□□□□□ -1.39
VPS13D-204ENST00000469054 A0A1B0GV90 55 aa6.34□□□□□ -1.39
VPS13D-204ENST00000469054 Q6ZVQ6 151 aa6.34□□□□□ -1.39
VPS13D-204ENST00000469054 A0A0U1RQV1 116 aa6.33□□□□□ -1.4
VPS13D-204ENST00000469054 PRR15Q8IV56 129 aa6.33□□□□□ -1.4
VPS13D-204ENST00000469054 LINC00846Q9NV44 126 aa6.33□□□□□ -1.4
VPS13D-204ENST00000469054 BPY2O14599 106 aa6.32□□□□□ -1.4
VPS13D-204ENST00000469054 C8orf17Q9NRJ1 99 aa6.32□□□□□ -1.4
VPS13D-204ENST00000469054 UBL5Q9BZL1 73 aa6.31□□□□□ -1.4
VPS13D-204ENST00000469054 K7EQZ3 153 aa6.29□□□□□ -1.4
VPS13D-204ENST00000469054 KRTAP19-4Q3LI73 84 aa6.28□□□□□ -1.4
VPS13D-204ENST00000469054 LCE4AQ5TA78 99 aa6.28□□□□□ -1.4
VPS13D-204ENST00000469054 FAT4Q6V0I7 4981 aa6.26□□□□□ -1.41
VPS13D-204ENST00000469054 Q8N9P0 234 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-204ENST00000469054 KRTAP4-8A0A0G2JLE6 195 aa6.25□□□□□ -1.41
VPS13D-204ENST00000469054 MMP24-AS1A0A0U1RRL7 71 aa6.25□□□□□ -1.41
VPS13D-204ENST00000469054 ACYP1P07311 99 aa6.24□□□□□ -1.41
VPS13D-204ENST00000469054 Q8N9L7 120 aa6.24□□□□□ -1.41
VPS13D-204ENST00000469054 hDV103S1A0JD37 113 aa6.23□□□□□ -1.41
VPS13D-204ENST00000469054 TMEM254Q8TBM7 123 aa6.23□□□□□ -1.41
VPS13D-204ENST00000469054 MRPL34Q9BQ48 92 aaKnown RBP6.23□□□□□ -1.41
VPS13D-204ENST00000469054 FAM240AA0A1B0GVK7 77 aa6.22□□□□□ -1.41
VPS13D-204ENST00000469054 CXCL6P80162 114 aa6.2□□□□□ -1.42
VPS13D-204ENST00000469054 KRTAP19-2Q3LHN2 52 aa6.2□□□□□ -1.42
VPS13D-204ENST00000469054 ZCCHC13Q8WW36 166 aaKnown RBP6.2□□□□□ -1.42
VPS13D-204ENST00000469054 WFDC13Q8IUB5 93 aa6.19□□□□□ -1.42
VPS13D-204ENST00000469054 KRTAP9-7A8MTY7 169 aa6.18□□□□□ -1.42
VPS13D-204ENST00000469054 CASC2Q6XLA1 102 aa6.17□□□□□ -1.42
VPS13D-204ENST00000469054 HCG22E2RYF7 251 aa6.15□□□□□ -1.42
VPS13D-204ENST00000469054 NDUFS5O43920 106 aa6.15□□□□□ -1.42
VPS13D-204ENST00000469054 LCE1DQ5T752 114 aa6.13□□□□□ -1.43
VPS13D-204ENST00000469054 J3QR89 54 aa6.12□□□□□ -1.43
VPS13D-204ENST00000469054 ATP5EP2Q5VTU8 51 aa6.12□□□□□ -1.43
VPS13D-204ENST00000469054 COX6B2Q6YFQ2 88 aa6.12□□□□□ -1.43
VPS13D-204ENST00000469054 SPINK7P58062 85 aa6.11□□□□□ -1.43
VPS13D-204ENST00000469054 LINC00643Q86TS7 51 aa6.1□□□□□ -1.43
VPS13D-204ENST00000469054 HRES1P13985 223 aa6.09□□□□□ -1.43
VPS13D-204ENST00000469054 MT1HP80294 61 aa6.08□□□□□ -1.44
VPS13D-204ENST00000469054 Q5W150 140 aa6.08□□□□□ -1.44
VPS13D-204ENST00000469054 MPLKIPQ8TAP9 179 aa6.07□□□□□ -1.44
VPS13D-204ENST00000469054 HIST1H4AP62805 103 aaKnown RBP6.06□□□□□ -1.44
VPS13D-204ENST00000469054 RBM12B-AS1Q9P1G2 102 aa6.06□□□□□ -1.44
VPS13D-204ENST00000469054 FAM236DA0A1B0GTK5 79 aa6.03□□□□□ -1.44
VPS13D-204ENST00000469054 FAM236CP0DP71 79 aa6.03□□□□□ -1.44
VPS13D-204ENST00000469054 TP53AIP1Q9HCN2 124 aa6.03□□□□□ -1.44
VPS13D-204ENST00000469054 IGKV2D-30A0A075B6S6 120 aa6.01□□□□□ -1.45
VPS13D-204ENST00000469054 IGKV2-30P06310 120 aa6.01□□□□□ -1.45
VPS13D-204ENST00000469054 C7orf65Q6ZTY9 151 aa6□□□□□ -1.45
VPS13D-204ENST00000469054 KRTAP4-7Q9BYR0 210 aa6□□□□□ -1.45
VPS13D-204ENST00000469054 FLGP20930 4061 aaPredicted RBP6□□□□□ -1.45
VPS13D-204ENST00000469054 A0A087WVE0 104 aa5.99□□□□□ -1.45
VPS13D-204ENST00000469054 M0R2T5 61 aa5.99□□□□□ -1.45
VPS13D-204ENST00000469054 K7ERU9 68 aa5.98□□□□□ -1.45
VPS13D-204ENST00000469054 KRTAP4-9Q9BYQ8 210 aa5.94□□□□□ -1.46
VPS13D-204ENST00000469054 KRTAP10-6P60371 365 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-204ENST00000469054 UQCRQO14949 82 aa5.92□□□□□ -1.46
VPS13D-204ENST00000469054 KRTAP9-3Q9BYQ3 159 aa5.92□□□□□ -1.46
VPS13D-204ENST00000469054 KRTAP3-1Q9BYR8 98 aa5.92□□□□□ -1.46
VPS13D-204ENST00000469054 TRAV22A0A0B4J277 110 aa5.91□□□□□ -1.46
VPS13D-204ENST00000469054 MT-ATP8P03928 68 aa5.88□□□□□ -1.47
VPS13D-204ENST00000469054 C4orf26Q17RF5 130 aa5.88□□□□□ -1.47
VPS13D-204ENST00000469054 IMUPQ9GZP8 106 aa5.88□□□□□ -1.47
VPS13D-204ENST00000469054 LOC101927531A0A1B0GV80 90 aa5.87□□□□□ -1.47
VPS13D-204ENST00000469054 H1FX-AS1Q4G0G2 97 aa5.87□□□□□ -1.47
VPS13D-204ENST00000469054 OCR1Q9BZK8 76 aa5.87□□□□□ -1.47
VPS13D-204ENST00000469054 CYP4F30PQ9H0H9 118 aa5.87□□□□□ -1.47
VPS13D-204ENST00000469054 H0Y9P7 68 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms