RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 SSBP3-AS1Q7Z2R9 100 aa10.73□□□□□ -0.69
COL9A3-205ENST00000466192 KRTAP1-4P0C5Y4 121 aa10.72□□□□□ -0.69
COL9A3-205ENST00000466192 KRTAP13-2Q52LG2 175 aa10.72□□□□□ -0.69
COL9A3-205ENST00000466192 ZCCHC13Q8WW36 166 aaKnown RBP10.71□□□□□ -0.69
COL9A3-205ENST00000466192 SMR3BP02814 79 aaPredicted RBP10.69□□□□□ -0.7
COL9A3-205ENST00000466192 V9GYY9 64 aa10.69□□□□□ -0.7
COL9A3-205ENST00000466192 MMP24-AS1A0A0U1RRL7 71 aa10.68□□□□□ -0.7
COL9A3-205ENST00000466192 Q1T7F1 81 aa10.68□□□□□ -0.7
COL9A3-205ENST00000466192 RYR3Q15413 4870 aa10.68□□□□□ -0.7
COL9A3-205ENST00000466192 CD164Q04900 197 aa10.67□□□□□ -0.7
COL9A3-205ENST00000466192 FAT1Q14517 4588 aa10.67□□□□□ -0.7
COL9A3-205ENST00000466192 C1orf64Q8NEQ6 169 aa10.66□□□□□ -0.7
COL9A3-205ENST00000466192 IGHV6-1A0A0B4J1U7 121 aa10.64□□□□□ -0.71
COL9A3-205ENST00000466192 CDK2AP2O75956 126 aa10.64□□□□□ -0.71
COL9A3-205ENST00000466192 SPINK6Q6UWN8 80 aa10.63□□□□□ -0.71
COL9A3-205ENST00000466192 A0A1B0GVX0 72 aa10.62□□□□□ -0.71
COL9A3-205ENST00000466192 PLA2G1BP04054 148 aaKnown RBP10.62□□□□□ -0.71
COL9A3-205ENST00000466192 CYP4F30PQ9H0H9 118 aa10.62□□□□□ -0.71
COL9A3-205ENST00000466192 C8orf17Q9NRJ1 99 aa10.6□□□□□ -0.71
COL9A3-205ENST00000466192 KRTAP10-4P60372 401 aaPredicted RBP10.58□□□□□ -0.72
COL9A3-205ENST00000466192 SEC61GP60059 68 aa10.58□□□□□ -0.72
COL9A3-205ENST00000466192 MP68P56378 58 aa10.56□□□□□ -0.72
COL9A3-205ENST00000466192 ASB16-AS1Q495Z4 193 aa10.56□□□□□ -0.72
COL9A3-205ENST00000466192 NOTCH2NLQ7Z3S9 236 aa10.56□□□□□ -0.72
COL9A3-205ENST00000466192 H0Y9P7 68 aa10.54□□□□□ -0.72
COL9A3-205ENST00000466192 LINC00208Q96KT6 92 aa10.53□□□□□ -0.72
COL9A3-205ENST00000466192 TRAV22A0A0B4J277 110 aa10.53□□□□□ -0.72
COL9A3-205ENST00000466192 TYMSOSQ8TAI1 123 aa10.53□□□□□ -0.72
COL9A3-205ENST00000466192 PMAIP1Q13794 54 aa10.5□□□□□ -0.73
COL9A3-205ENST00000466192 PRR26Q8N8Z3 221 aa10.5□□□□□ -0.73
COL9A3-205ENST00000466192 NDUFS5O43920 106 aa10.5□□□□□ -0.73
COL9A3-205ENST00000466192 PSPHP1O15172 72 aa10.49□□□□□ -0.73
COL9A3-205ENST00000466192 MRPL34Q9BQ48 92 aaKnown RBP10.49□□□□□ -0.73
COL9A3-205ENST00000466192 TP53AIP1Q9HCN2 124 aa10.46□□□□□ -0.73
COL9A3-205ENST00000466192 PRR4Q16378 134 aa10.46□□□□□ -0.74
COL9A3-205ENST00000466192 HSPG2P98160 4391 aa10.45□□□□□ -0.74
COL9A3-205ENST00000466192 H3BPC8 53 aa10.45□□□□□ -0.74
COL9A3-205ENST00000466192 C4orf48Q5BLP8 95 aa10.45□□□□□ -0.74
COL9A3-205ENST00000466192 PKHD1L1Q86WI1 4243 aa10.45□□□□□ -0.74
COL9A3-205ENST00000466192 LIMD2Q9BT23 127 aa10.44□□□□□ -0.74
COL9A3-205ENST00000466192 SPANXA2-OT1Q8N9U9 137 aa10.43□□□□□ -0.74
COL9A3-205ENST00000466192 SPINK1P00995 79 aa10.42□□□□□ -0.74
COL9A3-205ENST00000466192 A8MUN3 132 aa10.41□□□□□ -0.74
COL9A3-205ENST00000466192 LINC00304Q8N9R0 145 aa10.4□□□□□ -0.74
COL9A3-205ENST00000466192 RYR1P21817 5038 aa10.39□□□□□ -0.75
COL9A3-205ENST00000466192 C8orf87E5RJ46 101 aa10.38□□□□□ -0.75
COL9A3-205ENST00000466192 Q5VV11 94 aa10.38□□□□□ -0.75
COL9A3-205ENST00000466192 LINC00313P59037 77 aa10.37□□□□□ -0.75
COL9A3-205ENST00000466192 FAM229AH3BQW9 127 aa10.36□□□□□ -0.75
COL9A3-205ENST00000466192 SPAG11AQ6PDA7 123 aa10.34□□□□□ -0.75
COL9A3-205ENST00000466192 RPS29P62273 56 aaKnown RBP10.33□□□□□ -0.76
COL9A3-205ENST00000466192 Q8N9P0 234 aaPredicted RBP10.33□□□□□ -0.76
COL9A3-205ENST00000466192 Q5VSD8 79 aa10.31□□□□□ -0.76
COL9A3-205ENST00000466192 Q5W150 140 aa10.3□□□□□ -0.76
COL9A3-205ENST00000466192 PCOTHQ58A44 107 aa10.29□□□□□ -0.76
COL9A3-205ENST00000466192 A8MU10 97 aa10.28□□□□□ -0.76
COL9A3-205ENST00000466192 EPPK1P58107 5090 aaKnown RBP10.28□□□□□ -0.76
COL9A3-205ENST00000466192 KIAA1109Q2LD37 5005 aa10.28□□□□□ -0.76
COL9A3-205ENST00000466192 LRP1Q07954 4544 aaKnown RBP10.28□□□□□ -0.76
COL9A3-205ENST00000466192 CHKB-CPT1BH3BT56 60 aa10.26□□□□□ -0.77
COL9A3-205ENST00000466192 KRTAP17-1Q9BYP8 105 aa10.26□□□□□ -0.77
COL9A3-205ENST00000466192 TNXBP22105 4242 aa10.24□□□□□ -0.77
COL9A3-205ENST00000466192 KRTAP16-1A8MUX0 517 aa10.24□□□□□ -0.77
COL9A3-205ENST00000466192 KRTAP13-3Q3SY46 172 aa10.24□□□□□ -0.77
COL9A3-205ENST00000466192 PRR15LQ9BU68 103 aa10.23□□□□□ -0.77
COL9A3-205ENST00000466192 LOC101927531A0A1B0GV80 90 aa10.21□□□□□ -0.78
COL9A3-205ENST00000466192 Q75L30 129 aa10.21□□□□□ -0.78
COL9A3-205ENST00000466192 RETNLBQ9BQ08 111 aa10.21□□□□□ -0.78
COL9A3-205ENST00000466192 IGLV7-46A0A075B6I9 117 aa10.2□□□□□ -0.78
COL9A3-205ENST00000466192 FLG2Q5D862 2391 aaPredicted RBP10.18□□□□□ -0.78
COL9A3-205ENST00000466192 FAT3Q8TDW7 4589 aa10.17□□□□□ -0.78
COL9A3-205ENST00000466192 ATP11AUNQ6ZP68 121 aa10.17□□□□□ -0.78
COL9A3-205ENST00000466192 KTN1-AS1Q86SY8 53 aa10.17□□□□□ -0.78
COL9A3-205ENST00000466192 COA5Q86WW8 74 aa10.17□□□□□ -0.78
COL9A3-205ENST00000466192 LCA10Q71F78 164 aa10.16□□□□□ -0.78
COL9A3-205ENST00000466192 KRTAP10-8P60410 259 aa10.15□□□□□ -0.79
COL9A3-205ENST00000466192 Q8N1X5 172 aa10.15□□□□□ -0.79
COL9A3-205ENST00000466192 A6NED7 52 aa10.12□□□□□ -0.79
COL9A3-205ENST00000466192 SPTSSBQ8NFR3 76 aa10.11□□□□□ -0.79
COL9A3-205ENST00000466192 CDC42SE1Q9NRR8 79 aa10.08□□□□□ -0.8
COL9A3-205ENST00000466192 MYCBP2O75592 4640 aa10.08□□□□□ -0.8
COL9A3-205ENST00000466192 A6NN06 94 aa10.07□□□□□ -0.8
COL9A3-205ENST00000466192 LINC01558Q9Y6Z2 57 aa10.07□□□□□ -0.8
COL9A3-205ENST00000466192 C9orf92A6NGG3 77 aa10.04□□□□□ -0.8
COL9A3-205ENST00000466192 IGKV2-30P06310 120 aa10.04□□□□□ -0.8
COL9A3-205ENST00000466192 RBM12B-AS1Q9P1G2 102 aa10.03□□□□□ -0.8
COL9A3-205ENST00000466192 DMBT1Q9UGM3 2413 aaPredicted RBP10.02□□□□□ -0.81
COL9A3-205ENST00000466192 HRES1P13985 223 aa10.01□□□□□ -0.81
COL9A3-205ENST00000466192 IGKV2D-30A0A075B6S6 120 aa10□□□□□ -0.81
COL9A3-205ENST00000466192 MT1HL1P0DM35 61 aa9.97□□□□□ -0.81
COL9A3-205ENST00000466192 C20orf166-AS1Q96NR2 134 aa9.94□□□□□ -0.82
COL9A3-205ENST00000466192 A8MUU9 505 aa9.94□□□□□ -0.82
COL9A3-205ENST00000466192 C7orf65Q6ZTY9 151 aa9.94□□□□□ -0.82
COL9A3-205ENST00000466192 SPINK7P58062 85 aa9.9□□□□□ -0.82
COL9A3-205ENST00000466192 KRTAP4-5Q9BYR2 181 aa9.9□□□□□ -0.83
COL9A3-205ENST00000466192 ACYP2P14621 99 aa9.88□□□□□ -0.83
COL9A3-205ENST00000466192 DMAC1Q96GE9 116 aa9.88□□□□□ -0.83
COL9A3-205ENST00000466192 ABCA13Q86UQ4 5058 aa9.77□□□□□ -0.85
COL9A3-205ENST00000466192 BIRC6Q9NR09 4857 aa9.73□□□□□ -0.85
COL9A3-205ENST00000466192 XP32Q5T750 250 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms