RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 FAM236DA0A1B0GTK5 79 aa9.5□□□□□ -0.89
VARS-220ENST00000461874 FAM236CP0DP71 79 aa9.5□□□□□ -0.89
VARS-220ENST00000461874 C21orf62-AS1Q17RA5 79 aa9.5□□□□□ -0.89
VARS-220ENST00000461874 J3KT08 172 aa9.49□□□□□ -0.89
VARS-220ENST00000461874 RBM12B-AS1Q9P1G2 102 aa9.49□□□□□ -0.89
VARS-220ENST00000461874 Q6ZQT0 140 aa9.48□□□□□ -0.89
VARS-220ENST00000461874 M0R143 59 aa9.45□□□□□ -0.9
VARS-220ENST00000461874 ATXN8Q156A1 80 aa9.45□□□□□ -0.9
VARS-220ENST00000461874 NAA38Q9BRA0 125 aaKnown RBP9.44□□□□□ -0.9
VARS-220ENST00000461874 JMJD7-PLA2G4BH0Y9G9 81 aa9.42□□□□□ -0.9
VARS-220ENST00000461874 ZCCHC13Q8WW36 166 aaKnown RBP9.42□□□□□ -0.9
VARS-220ENST00000461874 LOC110117498A0A087WWA1 95 aa9.41□□□□□ -0.9
VARS-220ENST00000461874 NDUFB1O75438 58 aa9.41□□□□□ -0.9
VARS-220ENST00000461874 A0A1B0GW54 56 aa9.4□□□□□ -0.9
VARS-220ENST00000461874 MT2AP02795 61 aa9.39□□□□□ -0.91
VARS-220ENST00000461874 Q8N9P0 234 aaPredicted RBP9.38□□□□□ -0.91
VARS-220ENST00000461874 PDE6GP18545 87 aa9.37□□□□□ -0.91
VARS-220ENST00000461874 A8MWP4 228 aa9.36□□□□□ -0.91
VARS-220ENST00000461874 SPINK7P58062 85 aa9.36□□□□□ -0.91
VARS-220ENST00000461874 USH2AO75445 5202 aa9.35□□□□□ -0.91
VARS-220ENST00000461874 C8orf17Q9NRJ1 99 aa9.35□□□□□ -0.91
VARS-220ENST00000461874 MTURNQ8N3F0 131 aa9.34□□□□□ -0.91
VARS-220ENST00000461874 C14orf132Q9NPU4 83 aa9.34□□□□□ -0.91
VARS-220ENST00000461874 IGKV3D-7A0A0C4DH55 119 aa9.33□□□□□ -0.92
VARS-220ENST00000461874 MT1FP04733 61 aa9.32□□□□□ -0.92
VARS-220ENST00000461874 SMIM6P0DI80 62 aa9.32□□□□□ -0.92
VARS-220ENST00000461874 LYRM7Q5U5X0 104 aa9.31□□□□□ -0.92
VARS-220ENST00000461874 SSPOA2VEC9 5147 aa9.3□□□□□ -0.92
VARS-220ENST00000461874 Q6ZVQ6 151 aa9.28□□□□□ -0.92
VARS-220ENST00000461874 PRR15Q8IV56 129 aa9.27□□□□□ -0.93
VARS-220ENST00000461874 KRTAP10-10P60014 251 aa9.26□□□□□ -0.93
VARS-220ENST00000461874 NREPQ16612 68 aa9.26□□□□□ -0.93
VARS-220ENST00000461874 KRTAP9-3Q9BYQ3 159 aa9.25□□□□□ -0.93
VARS-220ENST00000461874 LCE2BO14633 110 aa9.23□□□□□ -0.93
VARS-220ENST00000461874 BATFQ16520 125 aa9.23□□□□□ -0.93
VARS-220ENST00000461874 TSTD3H0UI37 97 aa9.22□□□□□ -0.93
VARS-220ENST00000461874 WFDC13Q8IUB5 93 aa9.22□□□□□ -0.93
VARS-220ENST00000461874 MMP24-AS1A0A0U1RRL7 71 aa9.2□□□□□ -0.94
VARS-220ENST00000461874 TMEM254Q8TBM7 123 aa9.19□□□□□ -0.94
VARS-220ENST00000461874 MRPL34Q9BQ48 92 aaKnown RBP9.18□□□□□ -0.94
VARS-220ENST00000461874 C9orf118A6NHY6 69 aa9.17□□□□□ -0.94
VARS-220ENST00000461874 H3BT86 120 aa9.17□□□□□ -0.94
VARS-220ENST00000461874 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.16□□□□□ -0.94
VARS-220ENST00000461874 hDV103S1A0JD37 113 aa9.14□□□□□ -0.95
VARS-220ENST00000461874 K7EQZ3 153 aa9.14□□□□□ -0.95
VARS-220ENST00000461874 TAX1BP3O14907 124 aa9.14□□□□□ -0.95
VARS-220ENST00000461874 A0A1W2PPM0 123 aa9.13□□□□□ -0.95
VARS-220ENST00000461874 FCGBPQ9Y6R7 5405 aaPredicted RBP9.1□□□□□ -0.95
VARS-220ENST00000461874 KRTAP19-1Q8IUB9 90 aa9.1□□□□□ -0.95
VARS-220ENST00000461874 NDUFS5O43920 106 aa9.09□□□□□ -0.95
VARS-220ENST00000461874 BPY2O14599 106 aa9.08□□□□□ -0.96
VARS-220ENST00000461874 KRTAP9-7A8MTY7 169 aa9.07□□□□□ -0.96
VARS-220ENST00000461874 LOC105371267A0A1B0GV96 52 aa9.05□□□□□ -0.96
VARS-220ENST00000461874 H1FX-AS1Q4G0G2 97 aa9.04□□□□□ -0.96
VARS-220ENST00000461874 Q5W150 140 aa9.02□□□□□ -0.97
VARS-220ENST00000461874 IGKV2D-30A0A075B6S6 120 aa9□□□□□ -0.97
VARS-220ENST00000461874 IGKV2-30P06310 120 aa9□□□□□ -0.97
VARS-220ENST00000461874 Q8N9L7 120 aa9□□□□□ -0.97
VARS-220ENST00000461874 SPCS1Q9Y6A9 102 aa8.99□□□□□ -0.97
VARS-220ENST00000461874 C7orf65Q6ZTY9 151 aa8.98□□□□□ -0.97
VARS-220ENST00000461874 SMCPP49901 116 aaPredicted RBP8.97□□□□□ -0.97
VARS-220ENST00000461874 CASC2Q6XLA1 102 aa8.97□□□□□ -0.97
VARS-220ENST00000461874 HCG22E2RYF7 251 aa8.94□□□□□ -0.98
VARS-220ENST00000461874 KRTAP19-6Q3LI70 58 aa8.92□□□□□ -0.98
VARS-220ENST00000461874 CXCL6P80162 114 aa8.9□□□□□ -0.98
VARS-220ENST00000461874 LINC00846Q9NV44 126 aa8.9□□□□□ -0.98
VARS-220ENST00000461874 PRO0461Q9UI25 63 aa8.88□□□□□ -0.99
VARS-220ENST00000461874 MACF1Q9UPN3 7388 aaKnown RBP8.88□□□□□ -0.99
VARS-220ENST00000461874 UBL5Q9BZL1 73 aa8.87□□□□□ -0.99
VARS-220ENST00000461874 C4orf26Q17RF5 130 aa8.86□□□□□ -0.99
VARS-220ENST00000461874 COL5A1-AS1Q5SY13 56 aa8.86□□□□□ -0.99
VARS-220ENST00000461874 K7EP34 96 aa8.82□□□□□ -1
VARS-220ENST00000461874 SYNE2Q8WXH0 6885 aaKnown RBP8.78□□□□□ -1
VARS-220ENST00000461874 KRTAP3-1Q9BYR8 98 aa8.75□□□□□ -1.01
VARS-220ENST00000461874 C5orf47Q569G3 176 aa8.73□□□□□ -1.01
VARS-220ENST00000461874 C1orf64Q8NEQ6 169 aa8.69□□□□□ -1.02
VARS-220ENST00000461874 TP53AIP1Q9HCN2 124 aa8.69□□□□□ -1.02
VARS-220ENST00000461874 GTF2H5Q6ZYL4 71 aa8.68□□□□□ -1.02
VARS-220ENST00000461874 S4R3F8 94 aa8.68□□□□□ -1.02
VARS-220ENST00000461874 F8W1H4 67 aa8.66□□□□□ -1.02
VARS-220ENST00000461874 CSAG1Q6PB30 78 aa8.65□□□□□ -1.02
VARS-220ENST00000461874 FAM236AA0A1B0GUQ0 79 aa8.64□□□□□ -1.03
VARS-220ENST00000461874 FAM236BA0A1B0GV22 79 aa8.64□□□□□ -1.03
VARS-220ENST00000461874 ETDBQ3ZM63 59 aa8.64□□□□□ -1.03
VARS-220ENST00000461874 LCA10Q71F78 164 aa8.63□□□□□ -1.03
VARS-220ENST00000461874 PCP4L1A6NKN8 68 aa8.59□□□□□ -1.03
VARS-220ENST00000461874 CYP4F30PQ9H0H9 118 aa8.55□□□□□ -1.04
VARS-220ENST00000461874 KRTAP6-3Q3LI67 103 aa8.54□□□□□ -1.04
VARS-220ENST00000461874 SPRR2GQ9BYE4 73 aa8.54□□□□□ -1.04
VARS-220ENST00000461874 MT1BP07438 61 aa8.53□□□□□ -1.04
VARS-220ENST00000461874 KRTAP3-3Q9BYR6 98 aa8.52□□□□□ -1.05
VARS-220ENST00000461874 KRTAP19-8Q3LI54 63 aa8.51□□□□□ -1.05
VARS-220ENST00000461874 Q5VV11 94 aa8.5□□□□□ -1.05
VARS-220ENST00000461874 TRAV22A0A0B4J277 110 aa8.48□□□□□ -1.05
VARS-220ENST00000461874 KLKP1Q107X0 134 aa8.47□□□□□ -1.05
VARS-220ENST00000461874 LOC101927531A0A1B0GV80 90 aa8.46□□□□□ -1.06
VARS-220ENST00000461874 A6NN06 94 aa8.46□□□□□ -1.06
VARS-220ENST00000461874 ACYP1P07311 99 aa8.46□□□□□ -1.06
VARS-220ENST00000461874 A0A087WVE0 104 aa8.43□□□□□ -1.06
VARS-220ENST00000461874 ATP5EP2Q5VTU8 51 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms