RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 V9GYY9 64 aa6.58□□□□□ -1.36
RFX3-211ENST00000458034 Q1T7F1 81 aa6.57□□□□□ -1.36
RFX3-211ENST00000458034 ASB16-AS1Q495Z4 193 aa6.57□□□□□ -1.36
RFX3-211ENST00000458034 IGLV7-43P04211 117 aa6.56□□□□□ -1.36
RFX3-211ENST00000458034 PLECQ15149 4684 aaKnown RBP6.56□□□□□ -1.36
RFX3-211ENST00000458034 CD164Q04900 197 aa6.55□□□□□ -1.36
RFX3-211ENST00000458034 PRR4Q16378 134 aa6.55□□□□□ -1.36
RFX3-211ENST00000458034 LINC00336Q6ZUF6 198 aa6.55□□□□□ -1.36
RFX3-211ENST00000458034 IGHV6-1A0A0B4J1U7 121 aa6.54□□□□□ -1.36
RFX3-211ENST00000458034 MRPL34Q9BQ48 92 aaKnown RBP6.54□□□□□ -1.36
RFX3-211ENST00000458034 COL7A1Q02388 2944 aa6.53□□□□□ -1.36
RFX3-211ENST00000458034 NDUFS5O43920 106 aa6.52□□□□□ -1.37
RFX3-211ENST00000458034 SSBP3-AS1Q7Z2R9 100 aa6.52□□□□□ -1.37
RFX3-211ENST00000458034 DNAH17Q9UFH2 4485 aa6.52□□□□□ -1.37
RFX3-211ENST00000458034 LY6G6CO95867 125 aa6.51□□□□□ -1.37
RFX3-211ENST00000458034 LYSTQ99698 3801 aa6.51□□□□□ -1.37
RFX3-211ENST00000458034 DNAH7Q8WXX0 4024 aa6.5□□□□□ -1.37
RFX3-211ENST00000458034 IGLV7-46A0A075B6I9 117 aa6.5□□□□□ -1.37
RFX3-211ENST00000458034 C8orf87E5RJ46 101 aa6.5□□□□□ -1.37
RFX3-211ENST00000458034 C1orf195Q5TG92 126 aa6.5□□□□□ -1.37
RFX3-211ENST00000458034 BRK1Q8WUW1 75 aa6.5□□□□□ -1.37
RFX3-211ENST00000458034 KRTAP5-3Q6L8H2 238 aa6.49□□□□□ -1.37
RFX3-211ENST00000458034 ANAPC11Q9NYG5 84 aa6.48□□□□□ -1.37
RFX3-211ENST00000458034 CIRBP-AS1Q8TBR5 109 aa6.47□□□□□ -1.37
RFX3-211ENST00000458034 DNAH6Q9C0G6 4158 aa6.47□□□□□ -1.37
RFX3-211ENST00000458034 CSMD3Q7Z407 3707 aa6.46□□□□□ -1.37
RFX3-211ENST00000458034 LIMD2Q9BT23 127 aa6.46□□□□□ -1.38
RFX3-211ENST00000458034 LOC101927531A0A1B0GV80 90 aa6.45□□□□□ -1.38
RFX3-211ENST00000458034 PRKDCP78527 4128 aaKnown RBP6.44□□□□□ -1.38
RFX3-211ENST00000458034 STARD9Q9P2P6 4700 aa6.44□□□□□ -1.38
RFX3-211ENST00000458034 PCOTHQ58A44 107 aa6.44□□□□□ -1.38
RFX3-211ENST00000458034 SPINK6Q6UWN8 80 aa6.44□□□□□ -1.38
RFX3-211ENST00000458034 COA5Q86WW8 74 aa6.44□□□□□ -1.38
RFX3-211ENST00000458034 KRTAP19-4Q3LI73 84 aa6.42□□□□□ -1.38
RFX3-211ENST00000458034 KRTAP9-3Q9BYQ3 159 aa6.42□□□□□ -1.38
RFX3-211ENST00000458034 HECTD4Q9Y4D8 3996 aa6.42□□□□□ -1.38
RFX3-211ENST00000458034 PSPHP1O15172 72 aa6.41□□□□□ -1.38
RFX3-211ENST00000458034 DNAH2Q9P225 4427 aa6.41□□□□□ -1.38
RFX3-211ENST00000458034 Q8N9P0 234 aaPredicted RBP6.4□□□□□ -1.38
RFX3-211ENST00000458034 KRTAP10-2P60368 255 aa6.39□□□□□ -1.39
RFX3-211ENST00000458034 Q6ZSA8 131 aa6.39□□□□□ -1.39
RFX3-211ENST00000458034 DNAH8Q96JB1 4490 aa6.38□□□□□ -1.39
RFX3-211ENST00000458034 A0A087X002 238 aa6.38□□□□□ -1.39
RFX3-211ENST00000458034 A8MUN3 132 aa6.38□□□□□ -1.39
RFX3-211ENST00000458034 NOTCH2NLQ7Z3S9 236 aa6.38□□□□□ -1.39
RFX3-211ENST00000458034 ALMS1Q8TCU4 4167 aa6.37□□□□□ -1.39
RFX3-211ENST00000458034 LINC00313P59037 77 aa6.37□□□□□ -1.39
RFX3-211ENST00000458034 PRR15LQ9BU68 103 aa6.36□□□□□ -1.39
RFX3-211ENST00000458034 TENM2Q9NT68 2774 aa6.36□□□□□ -1.39
RFX3-211ENST00000458034 SRRM2Q9UQ35 2752 aaKnown RBP6.35□□□□□ -1.39
RFX3-211ENST00000458034 Q5VV11 94 aa6.35□□□□□ -1.39
RFX3-211ENST00000458034 KRTAP10-1P60331 282 aa6.34□□□□□ -1.39
RFX3-211ENST00000458034 KRTAP13-3Q3SY46 172 aa6.34□□□□□ -1.39
RFX3-211ENST00000458034 KRTAP13-2Q52LG2 175 aa6.33□□□□□ -1.4
RFX3-211ENST00000458034 Q75L30 129 aa6.33□□□□□ -1.4
RFX3-211ENST00000458034 CHKB-CPT1BH3BT56 60 aa6.32□□□□□ -1.4
RFX3-211ENST00000458034 LINC01558Q9Y6Z2 57 aa6.32□□□□□ -1.4
RFX3-211ENST00000458034 HRES1P13985 223 aa6.31□□□□□ -1.4
RFX3-211ENST00000458034 Q5W150 140 aa6.31□□□□□ -1.4
RFX3-211ENST00000458034 ACYP2P14621 99 aa6.3□□□□□ -1.4
RFX3-211ENST00000458034 KMT2AQ03164 3969 aa6.29□□□□□ -1.4
RFX3-211ENST00000458034 IGKV2-30P06310 120 aa6.27□□□□□ -1.41
RFX3-211ENST00000458034 KRTAP1-4P0C5Y4 121 aa6.27□□□□□ -1.41
RFX3-211ENST00000458034 KRTAP21-3Q3LHN1 58 aa6.27□□□□□ -1.41
RFX3-211ENST00000458034 TYMSOSQ8TAI1 123 aa6.27□□□□□ -1.41
RFX3-211ENST00000458034 A6NED7 52 aa6.26□□□□□ -1.41
RFX3-211ENST00000458034 SPINK1P00995 79 aa6.26□□□□□ -1.41
RFX3-211ENST00000458034 SPAG11AQ6PDA7 123 aa6.26□□□□□ -1.41
RFX3-211ENST00000458034 DMAC1Q96GE9 116 aa6.25□□□□□ -1.41
RFX3-211ENST00000458034 KRTAP9-8Q9BYQ0 159 aa6.25□□□□□ -1.41
RFX3-211ENST00000458034 DNAH5Q8TE73 4624 aa6.25□□□□□ -1.41
RFX3-211ENST00000458034 DNAH11Q96DT5 4516 aa6.24□□□□□ -1.41
RFX3-211ENST00000458034 FRAS1Q86XX4 4008 aa6.23□□□□□ -1.41
RFX3-211ENST00000458034 KRTAP16-1A8MUX0 517 aa6.23□□□□□ -1.41
RFX3-211ENST00000458034 PLA2G1BP04054 148 aaKnown RBP6.23□□□□□ -1.41
RFX3-211ENST00000458034 RPS29P62273 56 aaKnown RBP6.23□□□□□ -1.41
RFX3-211ENST00000458034 FBN3Q75N90 2809 aa6.22□□□□□ -1.41
RFX3-211ENST00000458034 MEGF8Q7Z7M0 2845 aa6.21□□□□□ -1.41
RFX3-211ENST00000458034 RETNLBQ9BQ08 111 aa6.2□□□□□ -1.42
RFX3-211ENST00000458034 CDC42SE1Q9NRR8 79 aa6.2□□□□□ -1.42
RFX3-211ENST00000458034 ATP11AUNQ6ZP68 121 aa6.19□□□□□ -1.42
RFX3-211ENST00000458034 LINC00304Q8N9R0 145 aa6.19□□□□□ -1.42
RFX3-211ENST00000458034 TGP01266 2768 aa6.17□□□□□ -1.42
RFX3-211ENST00000458034 PRR26Q8N8Z3 221 aa6.17□□□□□ -1.42
RFX3-211ENST00000458034 PMAIP1Q13794 54 aa6.16□□□□□ -1.42
RFX3-211ENST00000458034 IGKV2D-30A0A075B6S6 120 aa6.15□□□□□ -1.42
RFX3-211ENST00000458034 PKD1P98161 4303 aa6.14□□□□□ -1.43
RFX3-211ENST00000458034 LCA10Q71F78 164 aa6.14□□□□□ -1.43
RFX3-211ENST00000458034 SPTSSBQ8NFR3 76 aa6.13□□□□□ -1.43
RFX3-211ENST00000458034 C7orf65Q6ZTY9 151 aa6.12□□□□□ -1.43
RFX3-211ENST00000458034 FAT2Q9NYQ8 4349 aa6.11□□□□□ -1.43
RFX3-211ENST00000458034 A0A1B0GU69 56 aa6.1□□□□□ -1.43
RFX3-211ENST00000458034 SPINK7P58062 85 aa6.1□□□□□ -1.43
RFX3-211ENST00000458034 A8MU10 97 aa6.09□□□□□ -1.43
RFX3-211ENST00000458034 SACSQ9NZJ4 4579 aa6.08□□□□□ -1.44
RFX3-211ENST00000458034 LRP1BQ9NZR2 4599 aa6.07□□□□□ -1.44
RFX3-211ENST00000458034 KTN1-AS1Q86SY8 53 aa6.05□□□□□ -1.44
RFX3-211ENST00000458034 DNHD1Q96M86 4753 aa6.05□□□□□ -1.44
RFX3-211ENST00000458034 A0A1B0GVY2 172 aa6.04□□□□□ -1.44
RFX3-211ENST00000458034 A6NN06 94 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms