RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 SMR3AQ99954 134 aa3.1□□□□□ -1.91
CSMD3-204ENST00000455883 PLAC4Q8WY50 150 aa3.1□□□□□ -1.91
CSMD3-204ENST00000455883 KRTAP10-11P60412 298 aa3.09□□□□□ -1.91
CSMD3-204ENST00000455883 C9orf92A6NGG3 77 aa3.08□□□□□ -1.92
CSMD3-204ENST00000455883 ADM2Q7Z4H4 148 aa3.08□□□□□ -1.92
CSMD3-204ENST00000455883 XIRP2A4UGR9 3374 aa3.08□□□□□ -1.92
CSMD3-204ENST00000455883 CYSTM1Q9H1C7 97 aa3.07□□□□□ -1.92
CSMD3-204ENST00000455883 USP34Q70CQ2 3546 aa3.06□□□□□ -1.92
CSMD3-204ENST00000455883 PRAC1Q96KF2 57 aa3.04□□□□□ -1.92
CSMD3-204ENST00000455883 CFAP47Q6ZTR5 3102 aa3.03□□□□□ -1.92
CSMD3-204ENST00000455883 CASC10Q5T4H9 136 aa3.03□□□□□ -1.92
CSMD3-204ENST00000455883 A0A0G2JQZ4 141 aa3.03□□□□□ -1.92
CSMD3-204ENST00000455883 C20orf166-AS1Q96NR2 134 aa3.02□□□□□ -1.93
CSMD3-204ENST00000455883 KRTAP11-1Q8IUC1 163 aa3.02□□□□□ -1.93
CSMD3-204ENST00000455883 KRTAP1-3Q8IUG1 177 aa3.01□□□□□ -1.93
CSMD3-204ENST00000455883 M0R2T5 61 aa3.01□□□□□ -1.93
CSMD3-204ENST00000455883 UTRNP46939 3433 aa3.01□□□□□ -1.93
CSMD3-204ENST00000455883 A8MUU9 505 aa3.01□□□□□ -1.93
CSMD3-204ENST00000455883 KRTAP1-1Q07627 177 aa3.01□□□□□ -1.93
CSMD3-204ENST00000455883 FBN3Q75N90 2809 aa3□□□□□ -1.93
CSMD3-204ENST00000455883 OTOGQ6ZRI0 2925 aa3□□□□□ -1.93
CSMD3-204ENST00000455883 NDUFAF8A1L188 74 aa2.99□□□□□ -1.93
CSMD3-204ENST00000455883 Q6ZRN7 208 aaPredicted RBP2.98□□□□□ -1.93
CSMD3-204ENST00000455883 KRTAP13-1Q8IUC0 172 aa2.98□□□□□ -1.93
CSMD3-204ENST00000455883 Q8NDZ9 215 aa2.98□□□□□ -1.93
CSMD3-204ENST00000455883 MKI67P46013 3256 aaKnown RBP2.97□□□□□ -1.93
CSMD3-204ENST00000455883 AKAP9Q99996 3911 aa2.96□□□□□ -1.94
CSMD3-204ENST00000455883 COL6A3P12111 3177 aa2.93□□□□□ -1.94
CSMD3-204ENST00000455883 KRTAP21-3Q3LHN1 58 aa2.93□□□□□ -1.94
CSMD3-204ENST00000455883 P0C880 135 aa2.92□□□□□ -1.94
CSMD3-204ENST00000455883 KRTAP10-3P60369 221 aa2.92□□□□□ -1.94
CSMD3-204ENST00000455883 PRO2289Q9P1D8 64 aa2.92□□□□□ -1.94
CSMD3-204ENST00000455883 ZFHX3Q15911 3703 aa2.92□□□□□ -1.94
CSMD3-204ENST00000455883 Q5VSD8 79 aa2.91□□□□□ -1.94
CSMD3-204ENST00000455883 UNC80Q8N2C7 3258 aa2.9□□□□□ -1.94
CSMD3-204ENST00000455883 H0YAA0 97 aa2.9□□□□□ -1.95
CSMD3-204ENST00000455883 KRTAP1-5Q9BYS1 174 aa2.88□□□□□ -1.95
CSMD3-204ENST00000455883 SMR3BP02814 79 aaPredicted RBP2.87□□□□□ -1.95
CSMD3-204ENST00000455883 NBPF19A0A087WUL8 3843 aa2.87□□□□□ -1.95
CSMD3-204ENST00000455883 TPRXLQ17RH7 258 aa2.86□□□□□ -1.95
CSMD3-204ENST00000455883 LAMA3Q16787 3333 aa2.86□□□□□ -1.95
CSMD3-204ENST00000455883 INE1O15225 51 aa2.84□□□□□ -1.95
CSMD3-204ENST00000455883 SPEGQ15772 3267 aa2.83□□□□□ -1.96
CSMD3-204ENST00000455883 KRTAP10-1P60331 282 aa2.82□□□□□ -1.96
CSMD3-204ENST00000455883 DNAH14Q0VDD8 3507 aa2.81□□□□□ -1.96
CSMD3-204ENST00000455883 SPTBN5Q9NRC6 3674 aaKnown RBP2.81□□□□□ -1.96
CSMD3-204ENST00000455883 KRTAP23-1A1A580 65 aa2.8□□□□□ -1.96
CSMD3-204ENST00000455883 C10orf95Q9H7T3 257 aa2.8□□□□□ -1.96
CSMD3-204ENST00000455883 SPENQ96T58 3664 aaKnown RBP2.79□□□□□ -1.96
CSMD3-204ENST00000455883 VCANP13611 3396 aa2.79□□□□□ -1.96
CSMD3-204ENST00000455883 EYSQ5T1H1 3165 aa2.78□□□□□ -1.96
CSMD3-204ENST00000455883 MYO15AQ9UKN7 3530 aa2.78□□□□□ -1.96
CSMD3-204ENST00000455883 KRTAP13-2Q52LG2 175 aa2.78□□□□□ -1.96
CSMD3-204ENST00000455883 LOC400499M0QZD8 3231 aa2.77□□□□□ -1.97
CSMD3-204ENST00000455883 BSNQ9UPA5 3926 aa2.76□□□□□ -1.97
CSMD3-204ENST00000455883 DMDP11532 3685 aa2.75□□□□□ -1.97
CSMD3-204ENST00000455883 A8MU10 97 aa2.75□□□□□ -1.97
CSMD3-204ENST00000455883 CELSR3Q9NYQ7 3312 aa2.74□□□□□ -1.97
CSMD3-204ENST00000455883 KRTAP10-2P60368 255 aa2.74□□□□□ -1.97
CSMD3-204ENST00000455883 KRTAP13-4Q3LI77 160 aa2.74□□□□□ -1.97
CSMD3-204ENST00000455883 TRRAPQ9Y4A5 3859 aa2.74□□□□□ -1.97
CSMD3-204ENST00000455883 KRTAP13-3Q3SY46 172 aa2.73□□□□□ -1.97
CSMD3-204ENST00000455883 KRTAP7-1Q8IUC3 87 aa2.72□□□□□ -1.97
CSMD3-204ENST00000455883 XP32Q5T750 250 aa2.71□□□□□ -1.98
CSMD3-204ENST00000455883 DNAH3Q8TD57 4116 aa2.7□□□□□ -1.98
CSMD3-204ENST00000455883 BRCA2P51587 3418 aa2.69□□□□□ -1.98
CSMD3-204ENST00000455883 CMYA5Q8N3K9 4069 aa2.69□□□□□ -1.98
CSMD3-204ENST00000455883 KRTAP1-4P0C5Y4 121 aa2.69□□□□□ -1.98
CSMD3-204ENST00000455883 ZFHX4Q86UP3 3567 aa2.67□□□□□ -1.98
CSMD3-204ENST00000455883 KRTAP19-4Q3LI73 84 aa2.64□□□□□ -1.99
CSMD3-204ENST00000455883 KRTAP10-8P60410 259 aa2.63□□□□□ -1.99
CSMD3-204ENST00000455883 ZNF469Q96JG9 3925 aaPredicted RBP2.62□□□□□ -1.99
CSMD3-204ENST00000455883 ALMS1Q8TCU4 4167 aa2.61□□□□□ -1.99
CSMD3-204ENST00000455883 LYSTQ99698 3801 aa2.6□□□□□ -1.99
CSMD3-204ENST00000455883 VPS13CQ709C8 3753 aa2.6□□□□□ -1.99
CSMD3-204ENST00000455883 ANK2Q01484 3957 aa2.6□□□□□ -1.99
CSMD3-204ENST00000455883 DCHS1Q96JQ0 3298 aa2.59□□□□□ -2
CSMD3-204ENST00000455883 HECTD4Q9Y4D8 3996 aa2.59□□□□□ -2
CSMD3-204ENST00000455883 DNAH7Q8WXX0 4024 aa2.59□□□□□ -2
CSMD3-204ENST00000455883 CDH23Q9H251 3354 aa2.57□□□□□ -2
CSMD3-204ENST00000455883 LAMA5O15230 3695 aa2.56□□□□□ -2
CSMD3-204ENST00000455883 SZT2Q5T011 3432 aa2.56□□□□□ -2
CSMD3-204ENST00000455883 KRTAP12-1P59990 96 aa2.56□□□□□ -2
CSMD3-204ENST00000455883 WDFY3Q8IZQ1 3526 aa2.55□□□□□ -2
CSMD3-204ENST00000455883 SMG1Q96Q15 3661 aaKnown RBP2.54□□□□□ -2
CSMD3-204ENST00000455883 KRTAP15-1Q3LI76 137 aa2.51□□□□□ -2.01
CSMD3-204ENST00000455883 KRTAP12-2P59991 146 aa2.51□□□□□ -2.01
CSMD3-204ENST00000455883 KRTAP10-10P60014 251 aa2.5□□□□□ -2.01
CSMD3-204ENST00000455883 RELNP78509 3460 aa2.49□□□□□ -2.01
CSMD3-204ENST00000455883 KRTAP10-6P60371 365 aaPredicted RBP2.45□□□□□ -2.02
CSMD3-204ENST00000455883 VPS13BQ7Z7G8 4022 aa2.43□□□□□ -2.02
CSMD3-204ENST00000455883 ASPMQ8IZT6 3477 aa2.43□□□□□ -2.02
CSMD3-204ENST00000455883 DNAH1Q9P2D7 4330 aa2.41□□□□□ -2.02
CSMD3-204ENST00000455883 FLGP20930 4061 aaPredicted RBP2.4□□□□□ -2.03
CSMD3-204ENST00000455883 A0A1B0GVY2 172 aa2.39□□□□□ -2.03
CSMD3-204ENST00000455883 MUC3AQ02505 3323 aa2.39□□□□□ -2.03
CSMD3-204ENST00000455883 KRTAP10-12P60413 245 aa2.39□□□□□ -2.03
CSMD3-204ENST00000455883 FRAS1Q86XX4 4008 aa2.39□□□□□ -2.03
CSMD3-204ENST00000455883 DNAH6Q9C0G6 4158 aa2.38□□□□□ -2.03
CSMD3-204ENST00000455883 KMT2AQ03164 3969 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms