RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 KRTAP4-8Q9BYQ9 185 aa6.33□□□□□ -1.4
SCN9A-205ENST00000454569 ATP5EP2Q5VTU8 51 aa6.32□□□□□ -1.4
SCN9A-205ENST00000454569 KRTAP29-1A8MX34 341 aaPredicted RBP6.31□□□□□ -1.4
SCN9A-205ENST00000454569 NREPQ16612 68 aa6.31□□□□□ -1.4
SCN9A-205ENST00000454569 IGKV3D-7A0A0C4DH55 119 aa6.31□□□□□ -1.4
SCN9A-205ENST00000454569 OXTP01178 125 aa6.31□□□□□ -1.4
SCN9A-205ENST00000454569 LINC00304Q8N9R0 145 aa6.31□□□□□ -1.4
SCN9A-205ENST00000454569 A0A087WSZ3 146 aa6.3□□□□□ -1.4
SCN9A-205ENST00000454569 TRBV7-7A0A0K0K1E9 115 aa6.3□□□□□ -1.4
SCN9A-205ENST00000454569 UQCRQO14949 82 aa6.3□□□□□ -1.4
SCN9A-205ENST00000454569 C1orf195Q5TG92 126 aa6.29□□□□□ -1.4
SCN9A-205ENST00000454569 C4orf26Q17RF5 130 aa6.28□□□□□ -1.4
SCN9A-205ENST00000454569 TMEM258P61165 79 aa6.27□□□□□ -1.41
SCN9A-205ENST00000454569 CXCL6P80162 114 aa6.27□□□□□ -1.41
SCN9A-205ENST00000454569 CD164Q04900 197 aa6.27□□□□□ -1.41
SCN9A-205ENST00000454569 Q5XG85 94 aa6.27□□□□□ -1.41
SCN9A-205ENST00000454569 IMUPQ9GZP8 106 aa6.27□□□□□ -1.41
SCN9A-205ENST00000454569 A0A0A0MQY5 61 aa6.27□□□□□ -1.41
SCN9A-205ENST00000454569 BPY2O14599 106 aa6.25□□□□□ -1.41
SCN9A-205ENST00000454569 HIST1H4AP62805 103 aaKnown RBP6.25□□□□□ -1.41
SCN9A-205ENST00000454569 SPINK1P00995 79 aa6.24□□□□□ -1.41
SCN9A-205ENST00000454569 DEFB116Q30KQ4 102 aa6.23□□□□□ -1.41
SCN9A-205ENST00000454569 Q96NJ1 140 aa6.23□□□□□ -1.41
SCN9A-205ENST00000454569 HERC1Q15751 4861 aa6.23□□□□□ -1.41
SCN9A-205ENST00000454569 SPAG11AQ6PDA7 123 aa6.23□□□□□ -1.41
SCN9A-205ENST00000454569 RETNLBQ9BQ08 111 aa6.23□□□□□ -1.41
SCN9A-205ENST00000454569 KRTAP9-6A0A140TA67 174 aa6.22□□□□□ -1.41
SCN9A-205ENST00000454569 KRTAP9-7A8MTY7 169 aa6.22□□□□□ -1.41
SCN9A-205ENST00000454569 KRTAP9-2Q9BYQ4 174 aa6.22□□□□□ -1.41
SCN9A-205ENST00000454569 A0A087WVE0 104 aa6.21□□□□□ -1.42
SCN9A-205ENST00000454569 LCE4AQ5TA78 99 aa6.21□□□□□ -1.42
SCN9A-205ENST00000454569 LINC00472Q9H8W2 130 aa6.2□□□□□ -1.42
SCN9A-205ENST00000454569 FAM236AA0A1B0GUQ0 79 aa6.19□□□□□ -1.42
SCN9A-205ENST00000454569 FAM236BA0A1B0GV22 79 aa6.19□□□□□ -1.42
SCN9A-205ENST00000454569 RPS29P62273 56 aaKnown RBP6.19□□□□□ -1.42
SCN9A-205ENST00000454569 FAM236DA0A1B0GTK5 79 aa6.18□□□□□ -1.42
SCN9A-205ENST00000454569 FAM236CP0DP71 79 aa6.18□□□□□ -1.42
SCN9A-205ENST00000454569 Q8N9L7 120 aa6.18□□□□□ -1.42
SCN9A-205ENST00000454569 IGKV4-1P06312 121 aa6.18□□□□□ -1.42
SCN9A-205ENST00000454569 COX7CP15954 63 aa6.18□□□□□ -1.42
SCN9A-205ENST00000454569 DSCR10P59022 87 aa6.18□□□□□ -1.42
SCN9A-205ENST00000454569 ASB16-AS1Q495Z4 193 aa6.18□□□□□ -1.42
SCN9A-205ENST00000454569 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.17□□□□□ -1.42
SCN9A-205ENST00000454569 LIMD2Q9BT23 127 aa6.17□□□□□ -1.42
SCN9A-205ENST00000454569 K7EQZ3 153 aa6.16□□□□□ -1.42
SCN9A-205ENST00000454569 A8MWP4 228 aa6.14□□□□□ -1.43
SCN9A-205ENST00000454569 LPAP08519 4548 aa6.12□□□□□ -1.43
SCN9A-205ENST00000454569 ATOX1O00244 68 aa6.12□□□□□ -1.43
SCN9A-205ENST00000454569 NDUFB1O75438 58 aa6.12□□□□□ -1.43
SCN9A-205ENST00000454569 PMAIP1Q13794 54 aa6.1□□□□□ -1.43
SCN9A-205ENST00000454569 NOTCH2NLQ7Z3S9 236 aa6.1□□□□□ -1.43
SCN9A-205ENST00000454569 PRR15Q8IV56 129 aa6.1□□□□□ -1.43
SCN9A-205ENST00000454569 HMCN2Q8NDA2 5059 aa6.09□□□□□ -1.43
SCN9A-205ENST00000454569 HCG22E2RYF7 251 aa6.09□□□□□ -1.43
SCN9A-205ENST00000454569 A0A1B0GVX0 72 aa6.08□□□□□ -1.44
SCN9A-205ENST00000454569 PRR4Q16378 134 aa6.08□□□□□ -1.44
SCN9A-205ENST00000454569 SERP1Q9Y6X1 66 aa6.07□□□□□ -1.44
SCN9A-205ENST00000454569 IGHV6-1A0A0B4J1U7 121 aa6.06□□□□□ -1.44
SCN9A-205ENST00000454569 WFDC13Q8IUB5 93 aa6.06□□□□□ -1.44
SCN9A-205ENST00000454569 LRP2P98164 4655 aa6.06□□□□□ -1.44
SCN9A-205ENST00000454569 IGLV7-46A0A075B6I9 117 aa6.06□□□□□ -1.44
SCN9A-205ENST00000454569 SMIM26A0A096LP01 95 aa6.05□□□□□ -1.44
SCN9A-205ENST00000454569 C9orf92A6NGG3 77 aa6.05□□□□□ -1.44
SCN9A-205ENST00000454569 CASC2Q6XLA1 102 aa6.05□□□□□ -1.44
SCN9A-205ENST00000454569 MMP24-AS1A0A0U1RRL7 71 aa6.04□□□□□ -1.44
SCN9A-205ENST00000454569 LCE3BQ5TA77 95 aa6.04□□□□□ -1.44
SCN9A-205ENST00000454569 FP248Q71RG6 208 aaPredicted RBP6.04□□□□□ -1.44
SCN9A-205ENST00000454569 C8orf17Q9NRJ1 99 aa6.03□□□□□ -1.44
SCN9A-205ENST00000454569 KRTAP13-3Q3SY46 172 aa6.02□□□□□ -1.45
SCN9A-205ENST00000454569 hDV103S1A0JD37 113 aa6.01□□□□□ -1.45
SCN9A-205ENST00000454569 SERP2Q8N6R1 65 aa6.01□□□□□ -1.45
SCN9A-205ENST00000454569 TRAV7A0A075B6U4 112 aa6.01□□□□□ -1.45
SCN9A-205ENST00000454569 KRTAP16-1A8MUX0 517 aa6.01□□□□□ -1.45
SCN9A-205ENST00000454569 C8orf87E5RJ46 101 aa6.01□□□□□ -1.45
SCN9A-205ENST00000454569 A0A0U1RQV1 116 aa6□□□□□ -1.45
SCN9A-205ENST00000454569 BRK1Q8WUW1 75 aa6□□□□□ -1.45
SCN9A-205ENST00000454569 OCR1Q9BZK8 76 aa5.99□□□□□ -1.45
SCN9A-205ENST00000454569 LINC00313P59037 77 aa5.98□□□□□ -1.45
SCN9A-205ENST00000454569 KRTAP9-9Q9BYP9 154 aa5.98□□□□□ -1.45
SCN9A-205ENST00000454569 KRTAP9-4Q9BYQ2 154 aa5.98□□□□□ -1.45
SCN9A-205ENST00000454569 KRTAP15-1Q3LI76 137 aa5.97□□□□□ -1.45
SCN9A-205ENST00000454569 TMEM254Q8TBM7 123 aa5.97□□□□□ -1.45
SCN9A-205ENST00000454569 MRPL34Q9BQ48 92 aaKnown RBP5.97□□□□□ -1.45
SCN9A-205ENST00000454569 TPRXLQ17RH7 258 aa5.96□□□□□ -1.46
SCN9A-205ENST00000454569 NDUFS5O43920 106 aa5.95□□□□□ -1.46
SCN9A-205ENST00000454569 ATP5EP56381 51 aaPredicted RBP5.95□□□□□ -1.46
SCN9A-205ENST00000454569 KRTAP9-3Q9BYQ3 159 aa5.94□□□□□ -1.46
SCN9A-205ENST00000454569 CYSTM1Q9H1C7 97 aa5.92□□□□□ -1.46
SCN9A-205ENST00000454569 TP53AIP1Q9HCN2 124 aa5.92□□□□□ -1.46
SCN9A-205ENST00000454569 C20orf197Q8N268 126 aa5.91□□□□□ -1.46
SCN9A-205ENST00000454569 MPLKIPQ8TAP9 179 aa5.9□□□□□ -1.46
SCN9A-205ENST00000454569 A8MUU9 505 aa5.89□□□□□ -1.47
SCN9A-205ENST00000454569 Q8N9P0 234 aaPredicted RBP5.89□□□□□ -1.47
SCN9A-205ENST00000454569 C20orf166-AS1Q96NR2 134 aa5.89□□□□□ -1.47
SCN9A-205ENST00000454569 TRAV22A0A0B4J277 110 aa5.88□□□□□ -1.47
SCN9A-205ENST00000454569 MP68P56378 58 aa5.88□□□□□ -1.47
SCN9A-205ENST00000454569 H0Y9P7 68 aa5.87□□□□□ -1.47
SCN9A-205ENST00000454569 SNURFQ9Y675 71 aa5.87□□□□□ -1.47
SCN9A-205ENST00000454569 UBR4Q5T4S7 5183 aa5.86□□□□□ -1.47
SCN9A-205ENST00000454569 KLKP1Q107X0 134 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 278.6 ms