RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SPINT4Q6UDR6 99 aa4.3□□□□□ -1.72
SYNE1-213ENST00000448038 UQCR11O14957 56 aa4.3□□□□□ -1.72
SYNE1-213ENST00000448038 CSMD1Q96PZ7 3565 aa4.3□□□□□ -1.72
SYNE1-213ENST00000448038 FP248Q71RG6 208 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-213ENST00000448038 BSNQ9UPA5 3926 aa4.3□□□□□ -1.72
SYNE1-213ENST00000448038 SPENQ96T58 3664 aaKnown RBP4.3□□□□□ -1.72
SYNE1-213ENST00000448038 SPINK7P58062 85 aa4.29□□□□□ -1.72
SYNE1-213ENST00000448038 LUZP6Q538Z0 58 aa4.29□□□□□ -1.72
SYNE1-213ENST00000448038 TENM2Q9NT68 2774 aa4.29□□□□□ -1.72
SYNE1-213ENST00000448038 SEC61BP60468 96 aaKnown RBP4.29□□□□□ -1.72
SYNE1-213ENST00000448038 PRO0628Q9UI54 55 aa4.29□□□□□ -1.72
SYNE1-213ENST00000448038 KRTAP13-2Q52LG2 175 aa4.28□□□□□ -1.72
SYNE1-213ENST00000448038 CAMK2N1Q7Z7J9 78 aa4.28□□□□□ -1.72
SYNE1-213ENST00000448038 FLG2Q5D862 2391 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-213ENST00000448038 FBN1P35555 2871 aaKnown RBP4.27□□□□□ -1.73
SYNE1-213ENST00000448038 KTN1-AS1Q86SY8 53 aa4.27□□□□□ -1.73
SYNE1-213ENST00000448038 VWFP04275 2813 aa4.27□□□□□ -1.73
SYNE1-213ENST00000448038 OXTP01178 125 aa4.26□□□□□ -1.73
SYNE1-213ENST00000448038 CSMD2Q7Z408 3487 aa4.26□□□□□ -1.73
SYNE1-213ENST00000448038 ASB16-AS1Q495Z4 193 aa4.26□□□□□ -1.73
SYNE1-213ENST00000448038 RPS29P62273 56 aaKnown RBP4.25□□□□□ -1.73
SYNE1-213ENST00000448038 MIR22HGQ0VDD5 57 aa4.25□□□□□ -1.73
SYNE1-213ENST00000448038 KRTAP29-1A8MX34 341 aaPredicted RBP4.25□□□□□ -1.73
SYNE1-213ENST00000448038 CRIPTQ9P021 101 aa4.25□□□□□ -1.73
SYNE1-213ENST00000448038 NOTCH2NLQ7Z3S9 236 aa4.25□□□□□ -1.73
SYNE1-213ENST00000448038 A0A0A0MQY5 61 aa4.25□□□□□ -1.73
SYNE1-213ENST00000448038 PKD1L1Q8TDX9 2849 aa4.24□□□□□ -1.73
SYNE1-213ENST00000448038 ANK3Q12955 4377 aaKnown RBP4.24□□□□□ -1.73
SYNE1-213ENST00000448038 SVEP1Q4LDE5 3571 aa4.24□□□□□ -1.73
SYNE1-213ENST00000448038 M0R2T5 61 aa4.24□□□□□ -1.73
SYNE1-213ENST00000448038 CYSTM1Q9H1C7 97 aa4.24□□□□□ -1.73
SYNE1-213ENST00000448038 Q5XG85 94 aa4.21□□□□□ -1.73
SYNE1-213ENST00000448038 S4R3F8 94 aa4.21□□□□□ -1.74
SYNE1-213ENST00000448038 CSAG1Q6PB30 78 aa4.21□□□□□ -1.74
SYNE1-213ENST00000448038 A0A0D9SG42 100 aa4.2□□□□□ -1.74
SYNE1-213ENST00000448038 TGP01266 2768 aa4.17□□□□□ -1.74
SYNE1-213ENST00000448038 Q1T7F1 81 aa4.17□□□□□ -1.74
SYNE1-213ENST00000448038 KRTAP1-4P0C5Y4 121 aa4.16□□□□□ -1.74
SYNE1-213ENST00000448038 A0A1B0GU33 70 aa4.16□□□□□ -1.74
SYNE1-213ENST00000448038 DMAC1Q96GE9 116 aa4.15□□□□□ -1.75
SYNE1-213ENST00000448038 PLAC4Q8WY50 150 aa4.14□□□□□ -1.75
SYNE1-213ENST00000448038 Q75L30 129 aa4.14□□□□□ -1.75
SYNE1-213ENST00000448038 LINC01558Q9Y6Z2 57 aa4.14□□□□□ -1.75
SYNE1-213ENST00000448038 CDC42SE1Q9NRR8 79 aa4.12□□□□□ -1.75
SYNE1-213ENST00000448038 TRRAPQ9Y4A5 3859 aa4.11□□□□□ -1.75
SYNE1-213ENST00000448038 RPL37P61927 97 aaKnown RBP4.11□□□□□ -1.75
SYNE1-213ENST00000448038 A0A1B0GVY2 172 aa4.1□□□□□ -1.75
SYNE1-213ENST00000448038 CUBNO60494 3623 aa4.1□□□□□ -1.75
SYNE1-213ENST00000448038 R4GN34 69 aa4.08□□□□□ -1.76
SYNE1-213ENST00000448038 H3BS24 57 aa4.07□□□□□ -1.76
SYNE1-213ENST00000448038 LCA10Q71F78 164 aa4.07□□□□□ -1.76
SYNE1-213ENST00000448038 A8MUU9 505 aa4.06□□□□□ -1.76
SYNE1-213ENST00000448038 H1FX-AS1Q4G0G2 97 aa4.06□□□□□ -1.76
SYNE1-213ENST00000448038 C20orf166-AS1Q96NR2 134 aa4.05□□□□□ -1.76
SYNE1-213ENST00000448038 Q5VV11 94 aa4.05□□□□□ -1.76
SYNE1-213ENST00000448038 ADM2Q7Z4H4 148 aa4.02□□□□□ -1.77
SYNE1-213ENST00000448038 M0QZ58 72 aa4.01□□□□□ -1.77
SYNE1-213ENST00000448038 XP32Q5T750 250 aa4.01□□□□□ -1.77
SYNE1-213ENST00000448038 FBN3Q75N90 2809 aa3.98□□□□□ -1.77
SYNE1-213ENST00000448038 VPS13CQ709C8 3753 aa3.98□□□□□ -1.77
SYNE1-213ENST00000448038 ZNF469Q96JG9 3925 aaPredicted RBP3.98□□□□□ -1.77
SYNE1-213ENST00000448038 TPRXLQ17RH7 258 aa3.97□□□□□ -1.77
SYNE1-213ENST00000448038 KRTAP10-8P60410 259 aa3.97□□□□□ -1.77
SYNE1-213ENST00000448038 SPATA8Q6RVD6 105 aa3.96□□□□□ -1.78
SYNE1-213ENST00000448038 KRTAP16-1A8MUX0 517 aa3.94□□□□□ -1.78
SYNE1-213ENST00000448038 AKAP9Q99996 3911 aa3.94□□□□□ -1.78
SYNE1-213ENST00000448038 KRTAP13-3Q3SY46 172 aa3.94□□□□□ -1.78
SYNE1-213ENST00000448038 HUWE1Q7Z6Z7 4374 aaKnown RBP3.91□□□□□ -1.78
SYNE1-213ENST00000448038 COL7A1Q02388 2944 aa3.9□□□□□ -1.78
SYNE1-213ENST00000448038 MEGF8Q7Z7M0 2845 aa3.9□□□□□ -1.79
SYNE1-213ENST00000448038 SRRM2Q9UQ35 2752 aaKnown RBP3.89□□□□□ -1.79
SYNE1-213ENST00000448038 NDUFAF8A1L188 74 aa3.86□□□□□ -1.79
SYNE1-213ENST00000448038 ROMO1P60602 79 aa3.86□□□□□ -1.79
SYNE1-213ENST00000448038 A8MU10 97 aa3.86□□□□□ -1.79
SYNE1-213ENST00000448038 PRAC1Q96KF2 57 aa3.85□□□□□ -1.79
SYNE1-213ENST00000448038 DNAH9Q9NYC9 4486 aa3.79□□□□□ -1.8
SYNE1-213ENST00000448038 MT1HL1P0DM35 61 aa3.74□□□□□ -1.81
SYNE1-213ENST00000448038 KRTAP10-4P60372 401 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-213ENST00000448038 KRTAP10-10P60014 251 aa3.72□□□□□ -1.81
SYNE1-213ENST00000448038 KRTAP4-5Q9BYR2 181 aa3.71□□□□□ -1.81
SYNE1-213ENST00000448038 ALMS1Q8TCU4 4167 aa3.71□□□□□ -1.81
SYNE1-213ENST00000448038 P0C880 135 aa3.71□□□□□ -1.82
SYNE1-213ENST00000448038 A6NN06 94 aa3.7□□□□□ -1.82
SYNE1-213ENST00000448038 DNHD1Q96M86 4753 aa3.68□□□□□ -1.82
SYNE1-213ENST00000448038 H0YAA0 97 aa3.67□□□□□ -1.82
SYNE1-213ENST00000448038 TNP1P09430 55 aa3.67□□□□□ -1.82
SYNE1-213ENST00000448038 CSMD3Q7Z407 3707 aa3.65□□□□□ -1.83
SYNE1-213ENST00000448038 PLECQ15149 4684 aaKnown RBP3.64□□□□□ -1.83
SYNE1-213ENST00000448038 KRTAP25-1Q3LHN0 102 aa3.64□□□□□ -1.83
SYNE1-213ENST00000448038 KRTAP3-1Q9BYR8 98 aa3.64□□□□□ -1.83
SYNE1-213ENST00000448038 DNAH1Q9P2D7 4330 aa3.62□□□□□ -1.83
SYNE1-213ENST00000448038 PP632Q6XCG6 107 aa3.61□□□□□ -1.83
SYNE1-213ENST00000448038 VPS13DQ5THJ4 4388 aa3.59□□□□□ -1.84
SYNE1-213ENST00000448038 DNAH5Q8TE73 4624 aa3.58□□□□□ -1.84
SYNE1-213ENST00000448038 PRKDCP78527 4128 aaKnown RBP3.58□□□□□ -1.84
SYNE1-213ENST00000448038 ANK2Q01484 3957 aa3.57□□□□□ -1.84
SYNE1-213ENST00000448038 STARD9Q9P2P6 4700 aa3.55□□□□□ -1.84
SYNE1-213ENST00000448038 PRO2289Q9P1D8 64 aa3.55□□□□□ -1.84
SYNE1-213ENST00000448038 DNAH11Q96DT5 4516 aa3.55□□□□□ -1.84
SYNE1-213ENST00000448038 C10orf95Q9H7T3 257 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 123.7 ms