RNA–Protein interactions for RNA: ENST00000439717.2

HSPG2-206, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 637 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-206ENST00000439717 A8MUU9 505 aa6.28□□□□□ -1.4
HSPG2-206ENST00000439717 ATP11AUNQ6ZP68 121 aa6.28□□□□□ -1.4
HSPG2-206ENST00000439717 IGHV6-1A0A0B4J1U7 121 aa6.27□□□□□ -1.41
HSPG2-206ENST00000439717 A0A1B0GVX0 72 aa6.27□□□□□ -1.41
HSPG2-206ENST00000439717 C8orf87E5RJ46 101 aa6.27□□□□□ -1.41
HSPG2-206ENST00000439717 SMCPP49901 116 aaPredicted RBP6.26□□□□□ -1.41
HSPG2-206ENST00000439717 GTF2H5Q6ZYL4 71 aa6.26□□□□□ -1.41
HSPG2-206ENST00000439717 PRO0461Q9UI25 63 aa6.26□□□□□ -1.41
HSPG2-206ENST00000439717 NDUFB1O75438 58 aa6.25□□□□□ -1.41
HSPG2-206ENST00000439717 NREPQ16612 68 aa6.25□□□□□ -1.41
HSPG2-206ENST00000439717 KRTAP16-1A8MUX0 517 aa6.24□□□□□ -1.41
HSPG2-206ENST00000439717 A8MWP4 228 aa6.23□□□□□ -1.41
HSPG2-206ENST00000439717 NOTCH2NLQ7Z3S9 236 aa6.23□□□□□ -1.41
HSPG2-206ENST00000439717 FAT4Q6V0I7 4981 aa6.22□□□□□ -1.41
HSPG2-206ENST00000439717 LCE2AQ5TA79 106 aaPredicted RBP6.21□□□□□ -1.42
HSPG2-206ENST00000439717 F8W1H4 67 aa6.2□□□□□ -1.42
HSPG2-206ENST00000439717 IGKV3D-7A0A0C4DH55 119 aa6.18□□□□□ -1.42
HSPG2-206ENST00000439717 PRR15Q8IV56 129 aa6.17□□□□□ -1.42
HSPG2-206ENST00000439717 KRTAP19-2Q3LHN2 52 aa6.16□□□□□ -1.42
HSPG2-206ENST00000439717 C8orf17Q9NRJ1 99 aa6.16□□□□□ -1.42
HSPG2-206ENST00000439717 BPY2O14599 106 aa6.15□□□□□ -1.42
HSPG2-206ENST00000439717 LCE2CQ5TA81 110 aa6.15□□□□□ -1.42
HSPG2-206ENST00000439717 Q6ZVQ6 151 aa6.15□□□□□ -1.42
HSPG2-206ENST00000439717 Q8N9P0 234 aaPredicted RBP6.14□□□□□ -1.43
HSPG2-206ENST00000439717 K7EQZ3 153 aa6.12□□□□□ -1.43
HSPG2-206ENST00000439717 ETDBQ3ZM63 59 aa6.12□□□□□ -1.43
HSPG2-206ENST00000439717 UBL5Q9BZL1 73 aa6.12□□□□□ -1.43
HSPG2-206ENST00000439717 LINC00846Q9NV44 126 aa6.12□□□□□ -1.43
HSPG2-206ENST00000439717 MMP24-AS1A0A0U1RRL7 71 aa6.1□□□□□ -1.43
HSPG2-206ENST00000439717 COX6B2Q6YFQ2 88 aa6.1□□□□□ -1.43
HSPG2-206ENST00000439717 TMEM254Q8TBM7 123 aa6.1□□□□□ -1.43
HSPG2-206ENST00000439717 ZCCHC13Q8WW36 166 aaKnown RBP6.1□□□□□ -1.43
HSPG2-206ENST00000439717 MRPL34Q9BQ48 92 aaKnown RBP6.09□□□□□ -1.43
HSPG2-206ENST00000439717 hDV103S1A0JD37 113 aa6.08□□□□□ -1.44
HSPG2-206ENST00000439717 MT1HP80294 61 aa6.07□□□□□ -1.44
HSPG2-206ENST00000439717 Q8N9L7 120 aa6.04□□□□□ -1.44
HSPG2-206ENST00000439717 ACYP1P07311 99 aa6.02□□□□□ -1.45
HSPG2-206ENST00000439717 CASC2Q6XLA1 102 aa6.02□□□□□ -1.45
HSPG2-206ENST00000439717 FLGP20930 4061 aaPredicted RBP6.02□□□□□ -1.45
HSPG2-206ENST00000439717 NDUFS5O43920 106 aa6.01□□□□□ -1.45
HSPG2-206ENST00000439717 HRES1P13985 223 aa6.01□□□□□ -1.45
HSPG2-206ENST00000439717 SPINK7P58062 85 aa6.01□□□□□ -1.45
HSPG2-206ENST00000439717 CXCL6P80162 114 aa6.01□□□□□ -1.45
HSPG2-206ENST00000439717 A0A1B0GV90 55 aa6□□□□□ -1.45
HSPG2-206ENST00000439717 WFDC13Q8IUB5 93 aa6□□□□□ -1.45
HSPG2-206ENST00000439717 MPLKIPQ8TAP9 179 aa6□□□□□ -1.45
HSPG2-206ENST00000439717 RBM12B-AS1Q9P1G2 102 aa6□□□□□ -1.45
HSPG2-206ENST00000439717 FAM240AA0A1B0GVK7 77 aa5.99□□□□□ -1.45
HSPG2-206ENST00000439717 HCG22E2RYF7 251 aa5.98□□□□□ -1.45
HSPG2-206ENST00000439717 M0R2T5 61 aa5.98□□□□□ -1.45
HSPG2-206ENST00000439717 FAM236DA0A1B0GTK5 79 aa5.97□□□□□ -1.45
HSPG2-206ENST00000439717 FAM236CP0DP71 79 aa5.97□□□□□ -1.45
HSPG2-206ENST00000439717 KRTAP10-6P60371 365 aaPredicted RBP5.93□□□□□ -1.46
HSPG2-206ENST00000439717 ATP5EP2Q5VTU8 51 aa5.93□□□□□ -1.46
HSPG2-206ENST00000439717 LORP23490 312 aaPredicted RBP5.92□□□□□ -1.46
HSPG2-206ENST00000439717 Q5W150 140 aa5.92□□□□□ -1.46
HSPG2-206ENST00000439717 C7orf65Q6ZTY9 151 aa5.89□□□□□ -1.47
HSPG2-206ENST00000439717 KRTAP9-2Q9BYQ4 174 aa5.89□□□□□ -1.47
HSPG2-206ENST00000439717 TP53AIP1Q9HCN2 124 aa5.89□□□□□ -1.47
HSPG2-206ENST00000439717 IGKV2D-30A0A075B6S6 120 aa5.87□□□□□ -1.47
HSPG2-206ENST00000439717 IGKV2-30P06310 120 aa5.87□□□□□ -1.47
HSPG2-206ENST00000439717 LINC00643Q86TS7 51 aa5.87□□□□□ -1.47
HSPG2-206ENST00000439717 J3QR89 54 aa5.85□□□□□ -1.47
HSPG2-206ENST00000439717 LCE2DQ5TA82 110 aaPredicted RBP5.85□□□□□ -1.47
HSPG2-206ENST00000439717 HIST1H4AP62805 103 aaKnown RBP5.84□□□□□ -1.47
HSPG2-206ENST00000439717 H1FX-AS1Q4G0G2 97 aa5.78□□□□□ -1.48
HSPG2-206ENST00000439717 KRTAP9-8Q9BYQ0 159 aa5.77□□□□□ -1.49
HSPG2-206ENST00000439717 A0A087WVE0 104 aa5.76□□□□□ -1.49
HSPG2-206ENST00000439717 TRAV22A0A0B4J277 110 aa5.76□□□□□ -1.49
HSPG2-206ENST00000439717 UQCRQO14949 82 aa5.75□□□□□ -1.49
HSPG2-206ENST00000439717 C4orf26Q17RF5 130 aa5.75□□□□□ -1.49
HSPG2-206ENST00000439717 LOC101927531A0A1B0GV80 90 aa5.72□□□□□ -1.49
HSPG2-206ENST00000439717 ATOX1O00244 68 aa5.71□□□□□ -1.5
HSPG2-206ENST00000439717 CYP4F30PQ9H0H9 118 aa5.71□□□□□ -1.5
HSPG2-206ENST00000439717 K7ERU9 68 aa5.7□□□□□ -1.5
HSPG2-206ENST00000439717 MT2AP02795 61 aa5.7□□□□□ -1.5
HSPG2-206ENST00000439717 H0Y9P7 68 aa5.69□□□□□ -1.5
HSPG2-206ENST00000439717 C1orf64Q8NEQ6 169 aa5.69□□□□□ -1.5
HSPG2-206ENST00000439717 KRTAP3-1Q9BYR8 98 aa5.68□□□□□ -1.5
HSPG2-206ENST00000439717 OCR1Q9BZK8 76 aa5.66□□□□□ -1.5
HSPG2-206ENST00000439717 MT1FP04733 61 aa5.65□□□□□ -1.5
HSPG2-206ENST00000439717 KRTAP10-10P60014 251 aa5.65□□□□□ -1.5
HSPG2-206ENST00000439717 IMUPQ9GZP8 106 aa5.65□□□□□ -1.5
HSPG2-206ENST00000439717 KRTAP9-6A0A140TA67 174 aa5.63□□□□□ -1.51
HSPG2-206ENST00000439717 MP68P56378 58 aa5.63□□□□□ -1.51
HSPG2-206ENST00000439717 FSIP2Q5CZC0 6907 aa5.62□□□□□ -1.51
HSPG2-206ENST00000439717 SCGB1A1P11684 91 aa5.62□□□□□ -1.51
HSPG2-206ENST00000439717 C5orf47Q569G3 176 aa5.62□□□□□ -1.51
HSPG2-206ENST00000439717 S4R3F8 94 aa5.62□□□□□ -1.51
HSPG2-206ENST00000439717 LINC00208Q96KT6 92 aa5.61□□□□□ -1.51
HSPG2-206ENST00000439717 MT-ATP8P03928 68 aa5.6□□□□□ -1.51
HSPG2-206ENST00000439717 CRCT1Q9UGL9 99 aa5.6□□□□□ -1.51
HSPG2-206ENST00000439717 H3BPC8 53 aa5.58□□□□□ -1.52
HSPG2-206ENST00000439717 KRTAP9-3Q9BYQ3 159 aa5.58□□□□□ -1.52
HSPG2-206ENST00000439717 LCA10Q71F78 164 aa5.57□□□□□ -1.52
HSPG2-206ENST00000439717 CSAG1Q6PB30 78 aa5.56□□□□□ -1.52
HSPG2-206ENST00000439717 KLKP1Q107X0 134 aa5.55□□□□□ -1.52
HSPG2-206ENST00000439717 A8MUN3 132 aa5.54□□□□□ -1.52
HSPG2-206ENST00000439717 SMIM20Q8N5G0 67 aa5.53□□□□□ -1.52
HSPG2-206ENST00000439717 FAM236AA0A1B0GUQ0 79 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms