RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 ZNF861PO60384 105 aa9.77□□□□□ -0.84
CLCNKA-203ENST00000439316 Q8N9P0 234 aaPredicted RBP9.77□□□□□ -0.85
CLCNKA-203ENST00000439316 IGHV6-1A0A0B4J1U7 121 aa9.76□□□□□ -0.85
CLCNKA-203ENST00000439316 C1orf195Q5TG92 126 aa9.75□□□□□ -0.85
CLCNKA-203ENST00000439316 PKD1P98161 4303 aa9.75□□□□□ -0.85
CLCNKA-203ENST00000439316 CD164Q04900 197 aa9.75□□□□□ -0.85
CLCNKA-203ENST00000439316 Q5VV11 94 aa9.75□□□□□ -0.85
CLCNKA-203ENST00000439316 COA5Q86WW8 74 aa9.74□□□□□ -0.85
CLCNKA-203ENST00000439316 ANAPC11Q9NYG5 84 aa9.74□□□□□ -0.85
CLCNKA-203ENST00000439316 CDK2AP2O75956 126 aa9.74□□□□□ -0.85
CLCNKA-203ENST00000439316 KRTAP10-2P60368 255 aa9.74□□□□□ -0.85
CLCNKA-203ENST00000439316 LIMD2Q9BT23 127 aa9.74□□□□□ -0.85
CLCNKA-203ENST00000439316 DNAH8Q96JB1 4490 aa9.73□□□□□ -0.85
CLCNKA-203ENST00000439316 PCOTHQ58A44 107 aa9.73□□□□□ -0.85
CLCNKA-203ENST00000439316 MRPL34Q9BQ48 92 aaKnown RBP9.73□□□□□ -0.85
CLCNKA-203ENST00000439316 KMT2CQ8NEZ4 4911 aaKnown RBP9.72□□□□□ -0.85
CLCNKA-203ENST00000439316 NDUFS5O43920 106 aa9.7□□□□□ -0.86
CLCNKA-203ENST00000439316 A0A087X002 238 aa9.69□□□□□ -0.86
CLCNKA-203ENST00000439316 NOTCH2NLQ7Z3S9 236 aa9.69□□□□□ -0.86
CLCNKA-203ENST00000439316 RYR2Q92736 4967 aa9.66□□□□□ -0.86
CLCNKA-203ENST00000439316 PRR15LQ9BU68 103 aa9.66□□□□□ -0.86
CLCNKA-203ENST00000439316 IGLV7-43P04211 117 aa9.65□□□□□ -0.86
CLCNKA-203ENST00000439316 PKHD1P08F94 4074 aa9.65□□□□□ -0.87
CLCNKA-203ENST00000439316 LOC101927531A0A1B0GV80 90 aa9.63□□□□□ -0.87
CLCNKA-203ENST00000439316 CHKB-CPT1BH3BT56 60 aa9.62□□□□□ -0.87
CLCNKA-203ENST00000439316 Q75L30 129 aa9.61□□□□□ -0.87
CLCNKA-203ENST00000439316 KRTAP10-1P60331 282 aa9.6□□□□□ -0.87
CLCNKA-203ENST00000439316 KRTAP13-3Q3SY46 172 aa9.59□□□□□ -0.87
CLCNKA-203ENST00000439316 SPINK6Q6UWN8 80 aa9.59□□□□□ -0.87
CLCNKA-203ENST00000439316 A8MU10 97 aa9.58□□□□□ -0.88
CLCNKA-203ENST00000439316 HRES1P13985 223 aa9.57□□□□□ -0.88
CLCNKA-203ENST00000439316 CIRBP-AS1Q8TBR5 109 aa9.57□□□□□ -0.88
CLCNKA-203ENST00000439316 Q5W150 140 aa9.57□□□□□ -0.88
CLCNKA-203ENST00000439316 LINC01558Q9Y6Z2 57 aa9.56□□□□□ -0.88
CLCNKA-203ENST00000439316 SSBP3-AS1Q7Z2R9 100 aa9.55□□□□□ -0.88
CLCNKA-203ENST00000439316 Q6ZSA8 131 aa9.55□□□□□ -0.88
CLCNKA-203ENST00000439316 C8orf87E5RJ46 101 aa9.54□□□□□ -0.88
CLCNKA-203ENST00000439316 LRP1BQ9NZR2 4599 aa9.54□□□□□ -0.88
CLCNKA-203ENST00000439316 SPAG11AQ6PDA7 123 aa9.52□□□□□ -0.89
CLCNKA-203ENST00000439316 PMAIP1Q13794 54 aa9.5□□□□□ -0.89
CLCNKA-203ENST00000439316 DYNC1H1Q14204 4646 aaKnown RBP9.49□□□□□ -0.89
CLCNKA-203ENST00000439316 A0A1B0GVY2 172 aa9.49□□□□□ -0.89
CLCNKA-203ENST00000439316 LCA10Q71F78 164 aa9.49□□□□□ -0.89
CLCNKA-203ENST00000439316 RYR3Q15413 4870 aa9.48□□□□□ -0.89
CLCNKA-203ENST00000439316 A6NED7 52 aa9.48□□□□□ -0.89
CLCNKA-203ENST00000439316 VPS13BQ7Z7G8 4022 aa9.43□□□□□ -0.9
CLCNKA-203ENST00000439316 KRTAP13-2Q52LG2 175 aa9.43□□□□□ -0.9
CLCNKA-203ENST00000439316 CDC42SE1Q9NRR8 79 aa9.43□□□□□ -0.9
CLCNKA-203ENST00000439316 LINC00313P59037 77 aa9.43□□□□□ -0.9
CLCNKA-203ENST00000439316 ATP11AUNQ6ZP68 121 aa9.42□□□□□ -0.9
CLCNKA-203ENST00000439316 FAM229AH3BQW9 127 aa9.41□□□□□ -0.9
CLCNKA-203ENST00000439316 ACYP2P14621 99 aa9.39□□□□□ -0.91
CLCNKA-203ENST00000439316 PRR26Q8N8Z3 221 aa9.39□□□□□ -0.91
CLCNKA-203ENST00000439316 DMAC1Q96GE9 116 aa9.39□□□□□ -0.91
CLCNKA-203ENST00000439316 APOBP04114 4563 aaKnown RBP9.38□□□□□ -0.91
CLCNKA-203ENST00000439316 SPTSSBQ8NFR3 76 aa9.37□□□□□ -0.91
CLCNKA-203ENST00000439316 KRTAP16-1A8MUX0 517 aa9.35□□□□□ -0.91
CLCNKA-203ENST00000439316 IGKV2-30P06310 120 aa9.35□□□□□ -0.91
CLCNKA-203ENST00000439316 SPINK7P58062 85 aa9.35□□□□□ -0.91
CLCNKA-203ENST00000439316 KRTAP1-4P0C5Y4 121 aa9.32□□□□□ -0.92
CLCNKA-203ENST00000439316 A6NN06 94 aa9.32□□□□□ -0.92
CLCNKA-203ENST00000439316 RETNLBQ9BQ08 111 aa9.32□□□□□ -0.92
CLCNKA-203ENST00000439316 FAT1Q14517 4588 aa9.3□□□□□ -0.92
CLCNKA-203ENST00000439316 SMR3BP02814 79 aaPredicted RBP9.28□□□□□ -0.92
CLCNKA-203ENST00000439316 SEC61GP60059 68 aa9.28□□□□□ -0.92
CLCNKA-203ENST00000439316 KTN1-AS1Q86SY8 53 aa9.28□□□□□ -0.92
CLCNKA-203ENST00000439316 IGKV2D-30A0A075B6S6 120 aa9.17□□□□□ -0.94
CLCNKA-203ENST00000439316 PLA2G1BP04054 148 aaKnown RBP9.17□□□□□ -0.94
CLCNKA-203ENST00000439316 C4orf48Q5BLP8 95 aa9.17□□□□□ -0.94
CLCNKA-203ENST00000439316 HSPG2P98160 4391 aa9.16□□□□□ -0.94
CLCNKA-203ENST00000439316 A0A1B0GU69 56 aa9.16□□□□□ -0.94
CLCNKA-203ENST00000439316 SPINK1P00995 79 aa9.16□□□□□ -0.94
CLCNKA-203ENST00000439316 TYMSOSQ8TAI1 123 aa9.16□□□□□ -0.94
CLCNKA-203ENST00000439316 KRTAP10-4P60372 401 aaPredicted RBP9.14□□□□□ -0.95
CLCNKA-203ENST00000439316 C7orf65Q6ZTY9 151 aa9.13□□□□□ -0.95
CLCNKA-203ENST00000439316 EPPK1P58107 5090 aaKnown RBP9.13□□□□□ -0.95
CLCNKA-203ENST00000439316 RYR1P21817 5038 aa9.1□□□□□ -0.95
CLCNKA-203ENST00000439316 RPS29P62273 56 aaKnown RBP9.08□□□□□ -0.96
CLCNKA-203ENST00000439316 SPATA8Q6RVD6 105 aa9.07□□□□□ -0.96
CLCNKA-203ENST00000439316 KIAA1109Q2LD37 5005 aa9.06□□□□□ -0.96
CLCNKA-203ENST00000439316 RBM12B-AS1Q9P1G2 102 aa9.06□□□□□ -0.96
CLCNKA-203ENST00000439316 LINC00304Q8N9R0 145 aa9.05□□□□□ -0.96
CLCNKA-203ENST00000439316 PKHD1L1Q86WI1 4243 aa9.01□□□□□ -0.97
CLCNKA-203ENST00000439316 Q5VSD8 79 aa9.01□□□□□ -0.97
CLCNKA-203ENST00000439316 UQCR11O14957 56 aa9.01□□□□□ -0.97
CLCNKA-203ENST00000439316 MIR22HGQ0VDD5 57 aa8.99□□□□□ -0.97
CLCNKA-203ENST00000439316 KRTAP17-1Q9BYP8 105 aa8.99□□□□□ -0.97
CLCNKA-203ENST00000439316 Q8N1X5 172 aa8.97□□□□□ -0.97
CLCNKA-203ENST00000439316 LRP1Q07954 4544 aaKnown RBP8.94□□□□□ -0.98
CLCNKA-203ENST00000439316 FLG2Q5D862 2391 aaPredicted RBP8.92□□□□□ -0.98
CLCNKA-203ENST00000439316 A8MUU9 505 aa8.91□□□□□ -0.98
CLCNKA-203ENST00000439316 C20orf166-AS1Q96NR2 134 aa8.91□□□□□ -0.98
CLCNKA-203ENST00000439316 C9orf92A6NGG3 77 aa8.86□□□□□ -0.99
CLCNKA-203ENST00000439316 TNXBP22105 4242 aa8.85□□□□□ -0.99
CLCNKA-203ENST00000439316 MYCBP2O75592 4640 aa8.85□□□□□ -0.99
CLCNKA-203ENST00000439316 PRAC1Q96KF2 57 aa8.84□□□□□ -0.99
CLCNKA-203ENST00000439316 FAT3Q8TDW7 4589 aa8.84□□□□□ -0.99
CLCNKA-203ENST00000439316 ADM2Q7Z4H4 148 aa8.82□□□□□ -1
CLCNKA-203ENST00000439316 KRTAP3-1Q9BYR8 98 aa8.8□□□□□ -1
CLCNKA-203ENST00000439316 KRTAP10-8P60410 259 aa8.77□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms