RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 C9orf118A6NHY6 69 aa12.87□□□□□ -0.35
RAPGEF1-206ENST00000438647 KRTAP16-1A8MUX0 517 aa12.86□□□□□ -0.35
RAPGEF1-206ENST00000438647 C8orf87E5RJ46 101 aa12.85□□□□□ -0.35
RAPGEF1-206ENST00000438647 A0A1B0GVX0 72 aa12.84□□□□□ -0.35
RAPGEF1-206ENST00000438647 NOTCH2NLQ7Z3S9 236 aa12.84□□□□□ -0.35
RAPGEF1-206ENST00000438647 TAX1BP3O14907 124 aa12.82□□□□□ -0.36
RAPGEF1-206ENST00000438647 C14orf132Q9NPU4 83 aa12.82□□□□□ -0.36
RAPGEF1-206ENST00000438647 A0A1W2PPM0 123 aa12.8□□□□□ -0.36
RAPGEF1-206ENST00000438647 H3BT86 120 aa12.78□□□□□ -0.36
RAPGEF1-206ENST00000438647 NDUFB1O75438 58 aa12.78□□□□□ -0.36
RAPGEF1-206ENST00000438647 FLGP20930 4061 aaPredicted RBP12.77□□□□□ -0.37
RAPGEF1-206ENST00000438647 M0R2T5 61 aa12.76□□□□□ -0.37
RAPGEF1-206ENST00000438647 A8MWP4 228 aa12.69□□□□□ -0.38
RAPGEF1-206ENST00000438647 NREPQ16612 68 aa12.68□□□□□ -0.38
RAPGEF1-206ENST00000438647 MTURNQ8N3F0 131 aa12.68□□□□□ -0.38
RAPGEF1-206ENST00000438647 KRTAP10-6P60371 365 aaPredicted RBP12.65□□□□□ -0.38
RAPGEF1-206ENST00000438647 SPCS1Q9Y6A9 102 aa12.65□□□□□ -0.38
RAPGEF1-206ENST00000438647 LORP23490 312 aaPredicted RBP12.63□□□□□ -0.39
RAPGEF1-206ENST00000438647 LCE2DQ5TA82 110 aaPredicted RBP12.63□□□□□ -0.39
RAPGEF1-206ENST00000438647 C8orf17Q9NRJ1 99 aa12.62□□□□□ -0.39
RAPGEF1-206ENST00000438647 IGKV3D-7A0A0C4DH55 119 aa12.61□□□□□ -0.39
RAPGEF1-206ENST00000438647 COL5A1-AS1Q5SY13 56 aa12.61□□□□□ -0.39
RAPGEF1-206ENST00000438647 PRR15Q8IV56 129 aa12.58□□□□□ -0.4
RAPGEF1-206ENST00000438647 Q8N9P0 234 aaPredicted RBP12.58□□□□□ -0.4
RAPGEF1-206ENST00000438647 ZCCHC13Q8WW36 166 aaKnown RBP12.58□□□□□ -0.4
RAPGEF1-206ENST00000438647 RBM12B-AS1Q9P1G2 102 aa12.54□□□□□ -0.4
RAPGEF1-206ENST00000438647 FAM236DA0A1B0GTK5 79 aa12.53□□□□□ -0.4
RAPGEF1-206ENST00000438647 FAM236CP0DP71 79 aa12.53□□□□□ -0.4
RAPGEF1-206ENST00000438647 Q6ZVQ6 151 aa12.53□□□□□ -0.4
RAPGEF1-206ENST00000438647 HRES1P13985 223 aa12.5□□□□□ -0.41
RAPGEF1-206ENST00000438647 MPLKIPQ8TAP9 179 aa12.48□□□□□ -0.41
RAPGEF1-206ENST00000438647 SMCPP49901 116 aaPredicted RBP12.47□□□□□ -0.41
RAPGEF1-206ENST00000438647 BPY2O14599 106 aa12.46□□□□□ -0.41
RAPGEF1-206ENST00000438647 MMP24-AS1A0A0U1RRL7 71 aa12.45□□□□□ -0.42
RAPGEF1-206ENST00000438647 K7EP34 96 aa12.45□□□□□ -0.42
RAPGEF1-206ENST00000438647 TMEM254Q8TBM7 123 aa12.45□□□□□ -0.42
RAPGEF1-206ENST00000438647 K7EQZ3 153 aa12.44□□□□□ -0.42
RAPGEF1-206ENST00000438647 KRTAP9-6A0A140TA67 174 aa12.43□□□□□ -0.42
RAPGEF1-206ENST00000438647 SPINK7P58062 85 aa12.43□□□□□ -0.42
RAPGEF1-206ENST00000438647 MRPL34Q9BQ48 92 aaKnown RBP12.43□□□□□ -0.42
RAPGEF1-206ENST00000438647 PRO0461Q9UI25 63 aa12.41□□□□□ -0.42
RAPGEF1-206ENST00000438647 hDV103S1A0JD37 113 aa12.4□□□□□ -0.42
RAPGEF1-206ENST00000438647 GTF2H5Q6ZYL4 71 aa12.36□□□□□ -0.43
RAPGEF1-206ENST00000438647 PCP4L1A6NKN8 68 aa12.34□□□□□ -0.43
RAPGEF1-206ENST00000438647 NDUFS5O43920 106 aa12.33□□□□□ -0.44
RAPGEF1-206ENST00000438647 UBL5Q9BZL1 73 aa12.31□□□□□ -0.44
RAPGEF1-206ENST00000438647 FSIP2Q5CZC0 6907 aa12.29□□□□□ -0.44
RAPGEF1-206ENST00000438647 Q8N9L7 120 aa12.27□□□□□ -0.45
RAPGEF1-206ENST00000438647 LINC00846Q9NV44 126 aa12.27□□□□□ -0.45
RAPGEF1-206ENST00000438647 WFDC13Q8IUB5 93 aa12.26□□□□□ -0.45
RAPGEF1-206ENST00000438647 F8W1H4 67 aa12.25□□□□□ -0.45
RAPGEF1-206ENST00000438647 CASC2Q6XLA1 102 aa12.24□□□□□ -0.45
RAPGEF1-206ENST00000438647 CRCT1Q9UGL9 99 aa12.24□□□□□ -0.45
RAPGEF1-206ENST00000438647 KRTAP9-8Q9BYQ0 159 aa12.22□□□□□ -0.45
RAPGEF1-206ENST00000438647 HCG22E2RYF7 251 aa12.15□□□□□ -0.46
RAPGEF1-206ENST00000438647 ETDBQ3ZM63 59 aa12.15□□□□□ -0.46
RAPGEF1-206ENST00000438647 CXCL6P80162 114 aa12.11□□□□□ -0.47
RAPGEF1-206ENST00000438647 Q5W150 140 aa12.11□□□□□ -0.47
RAPGEF1-206ENST00000438647 C7orf65Q6ZTY9 151 aa12.11□□□□□ -0.47
RAPGEF1-206ENST00000438647 IGKV2D-30A0A075B6S6 120 aa12.1□□□□□ -0.47
RAPGEF1-206ENST00000438647 IGKV2-30P06310 120 aa12.1□□□□□ -0.47
RAPGEF1-206ENST00000438647 MT2AP02795 61 aa12.07□□□□□ -0.48
RAPGEF1-206ENST00000438647 H1FX-AS1Q4G0G2 97 aa11.99□□□□□ -0.49
RAPGEF1-206ENST00000438647 MT1FP04733 61 aa11.97□□□□□ -0.49
RAPGEF1-206ENST00000438647 KRTAP10-10P60014 251 aa11.97□□□□□ -0.49
RAPGEF1-206ENST00000438647 ACYP1P07311 99 aa11.94□□□□□ -0.5
RAPGEF1-206ENST00000438647 TP53AIP1Q9HCN2 124 aa11.93□□□□□ -0.5
RAPGEF1-206ENST00000438647 USH2AO75445 5202 aa11.87□□□□□ -0.51
RAPGEF1-206ENST00000438647 FAM240AA0A1B0GVK7 77 aa11.87□□□□□ -0.51
RAPGEF1-206ENST00000438647 C4orf26Q17RF5 130 aa11.86□□□□□ -0.51
RAPGEF1-206ENST00000438647 KRTAP9-3Q9BYQ3 159 aa11.84□□□□□ -0.51
RAPGEF1-206ENST00000438647 ATP5EP2Q5VTU8 51 aa11.82□□□□□ -0.52
RAPGEF1-206ENST00000438647 LCE2BO14633 110 aa11.73□□□□□ -0.53
RAPGEF1-206ENST00000438647 SSPOA2VEC9 5147 aa11.71□□□□□ -0.53
RAPGEF1-206ENST00000438647 HIST1H4AP62805 103 aaKnown RBP11.7□□□□□ -0.54
RAPGEF1-206ENST00000438647 C1orf64Q8NEQ6 169 aa11.68□□□□□ -0.54
RAPGEF1-206ENST00000438647 TRAV22A0A0B4J277 110 aa11.66□□□□□ -0.54
RAPGEF1-206ENST00000438647 A0A1B0GV90 55 aa11.65□□□□□ -0.54
RAPGEF1-206ENST00000438647 KRTAP3-1Q9BYR8 98 aa11.64□□□□□ -0.55
RAPGEF1-206ENST00000438647 LINC00643Q86TS7 51 aa11.63□□□□□ -0.55
RAPGEF1-206ENST00000438647 CYP4F30PQ9H0H9 118 aa11.62□□□□□ -0.55
RAPGEF1-206ENST00000438647 S4R3F8 94 aa11.61□□□□□ -0.55
RAPGEF1-206ENST00000438647 LOC101927531A0A1B0GV80 90 aa11.6□□□□□ -0.55
RAPGEF1-206ENST00000438647 C5orf47Q569G3 176 aa11.58□□□□□ -0.56
RAPGEF1-206ENST00000438647 UQCRQO14949 82 aa11.57□□□□□ -0.56
RAPGEF1-206ENST00000438647 ATOX1O00244 68 aa11.53□□□□□ -0.56
RAPGEF1-206ENST00000438647 CSAG1Q6PB30 78 aa11.52□□□□□ -0.57
RAPGEF1-206ENST00000438647 A0A087WVE0 104 aa11.51□□□□□ -0.57
RAPGEF1-206ENST00000438647 LCA10Q71F78 164 aa11.5□□□□□ -0.57
RAPGEF1-206ENST00000438647 KRTAP19-1Q8IUB9 90 aa11.5□□□□□ -0.57
RAPGEF1-206ENST00000438647 H0Y9P7 68 aa11.49□□□□□ -0.57
RAPGEF1-206ENST00000438647 J3QR89 54 aa11.47□□□□□ -0.57
RAPGEF1-206ENST00000438647 FCGBPQ9Y6R7 5405 aaPredicted RBP11.45□□□□□ -0.58
RAPGEF1-206ENST00000438647 FAM236AA0A1B0GUQ0 79 aa11.43□□□□□ -0.58
RAPGEF1-206ENST00000438647 FAM236BA0A1B0GV22 79 aa11.43□□□□□ -0.58
RAPGEF1-206ENST00000438647 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.37□□□□□ -0.59
RAPGEF1-206ENST00000438647 KRTAP19-6Q3LI70 58 aa11.35□□□□□ -0.59
RAPGEF1-206ENST00000438647 MP68P56378 58 aa11.32□□□□□ -0.6
RAPGEF1-206ENST00000438647 OCR1Q9BZK8 76 aa11.32□□□□□ -0.6
RAPGEF1-206ENST00000438647 LINC00208Q96KT6 92 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 168 ms