RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 C1orf134Q5TEV5 83 aa7.01□□□□□ -1.29
CD44-209ENST00000433892 DNAH5Q8TE73 4624 aa7.01□□□□□ -1.29
CD44-209ENST00000433892 IGLV7-46A0A075B6I9 117 aa6.99□□□□□ -1.29
CD44-209ENST00000433892 A8MUN3 132 aa6.98□□□□□ -1.29
CD44-209ENST00000433892 IGLV7-43P04211 117 aa6.98□□□□□ -1.29
CD44-209ENST00000433892 CD164Q04900 197 aa6.98□□□□□ -1.29
CD44-209ENST00000433892 SPINK6Q6UWN8 80 aa6.98□□□□□ -1.29
CD44-209ENST00000433892 MRPL34Q9BQ48 92 aaKnown RBP6.98□□□□□ -1.29
CD44-209ENST00000433892 CIRBP-AS1Q8TBR5 109 aa6.97□□□□□ -1.29
CD44-209ENST00000433892 LY6G6CO95867 125 aa6.97□□□□□ -1.29
CD44-209ENST00000433892 V9GYY9 64 aa6.97□□□□□ -1.29
CD44-209ENST00000433892 COA5Q86WW8 74 aa6.96□□□□□ -1.3
CD44-209ENST00000433892 Q8N9P0 234 aaPredicted RBP6.96□□□□□ -1.3
CD44-209ENST00000433892 LRP1BQ9NZR2 4599 aa6.93□□□□□ -1.3
CD44-209ENST00000433892 Q5VV11 94 aa6.93□□□□□ -1.3
CD44-209ENST00000433892 KRTAP10-2P60368 255 aa6.92□□□□□ -1.3
CD44-209ENST00000433892 LIMD2Q9BT23 127 aa6.91□□□□□ -1.3
CD44-209ENST00000433892 KRTAP3-3Q9BYR6 98 aa6.9□□□□□ -1.3
CD44-209ENST00000433892 KRTAP3-2Q9BYR7 98 aa6.9□□□□□ -1.3
CD44-209ENST00000433892 PKD1P98161 4303 aa6.9□□□□□ -1.3
CD44-209ENST00000433892 C1orf195Q5TG92 126 aa6.9□□□□□ -1.31
CD44-209ENST00000433892 Q5W150 140 aa6.9□□□□□ -1.31
CD44-209ENST00000433892 PRR15LQ9BU68 103 aa6.9□□□□□ -1.31
CD44-209ENST00000433892 SSBP3-AS1Q7Z2R9 100 aa6.88□□□□□ -1.31
CD44-209ENST00000433892 CHKB-CPT1BH3BT56 60 aa6.88□□□□□ -1.31
CD44-209ENST00000433892 HYDINQ4G0P3 5121 aa6.88□□□□□ -1.31
CD44-209ENST00000433892 FAT2Q9NYQ8 4349 aa6.88□□□□□ -1.31
CD44-209ENST00000433892 A8MU10 97 aa6.87□□□□□ -1.31
CD44-209ENST00000433892 HRES1P13985 223 aa6.85□□□□□ -1.31
CD44-209ENST00000433892 VPS13BQ7Z7G8 4022 aa6.85□□□□□ -1.31
CD44-209ENST00000433892 LOC101927531A0A1B0GV80 90 aa6.85□□□□□ -1.31
CD44-209ENST00000433892 KRTAP13-3Q3SY46 172 aa6.85□□□□□ -1.31
CD44-209ENST00000433892 SPAG11AQ6PDA7 123 aa6.85□□□□□ -1.31
CD44-209ENST00000433892 KRTAP13-2Q52LG2 175 aa6.83□□□□□ -1.32
CD44-209ENST00000433892 KRTAP10-1P60331 282 aa6.82□□□□□ -1.32
CD44-209ENST00000433892 C8orf87E5RJ46 101 aa6.81□□□□□ -1.32
CD44-209ENST00000433892 LINC00313P59037 77 aa6.81□□□□□ -1.32
CD44-209ENST00000433892 Q75L30 129 aa6.8□□□□□ -1.32
CD44-209ENST00000433892 Q6ZSA8 131 aa6.79□□□□□ -1.32
CD44-209ENST00000433892 RETNLBQ9BQ08 111 aa6.79□□□□□ -1.32
CD44-209ENST00000433892 A6NED7 52 aa6.78□□□□□ -1.32
CD44-209ENST00000433892 LINC01558Q9Y6Z2 57 aa6.78□□□□□ -1.32
CD44-209ENST00000433892 LCA10Q71F78 164 aa6.76□□□□□ -1.33
CD44-209ENST00000433892 PRR26Q8N8Z3 221 aa6.76□□□□□ -1.33
CD44-209ENST00000433892 PKHD1P08F94 4074 aa6.76□□□□□ -1.33
CD44-209ENST00000433892 KRTAP1-4P0C5Y4 121 aa6.75□□□□□ -1.33
CD44-209ENST00000433892 FAM229AH3BQW9 127 aa6.74□□□□□ -1.33
CD44-209ENST00000433892 ACYP2P14621 99 aa6.73□□□□□ -1.33
CD44-209ENST00000433892 PMAIP1Q13794 54 aa6.73□□□□□ -1.33
CD44-209ENST00000433892 SPTSSBQ8NFR3 76 aa6.73□□□□□ -1.33
CD44-209ENST00000433892 KRTAP16-1A8MUX0 517 aa6.71□□□□□ -1.34
CD44-209ENST00000433892 PLA2G1BP04054 148 aaKnown RBP6.7□□□□□ -1.34
CD44-209ENST00000433892 IGKV2-30P06310 120 aa6.7□□□□□ -1.34
CD44-209ENST00000433892 SPINK7P58062 85 aa6.69□□□□□ -1.34
CD44-209ENST00000433892 DMAC1Q96GE9 116 aa6.69□□□□□ -1.34
CD44-209ENST00000433892 CDC42SE1Q9NRR8 79 aa6.68□□□□□ -1.34
CD44-209ENST00000433892 C4orf48Q5BLP8 95 aa6.67□□□□□ -1.34
CD44-209ENST00000433892 ATP11AUNQ6ZP68 121 aa6.67□□□□□ -1.34
CD44-209ENST00000433892 TYMSOSQ8TAI1 123 aa6.66□□□□□ -1.34
CD44-209ENST00000433892 SACSQ9NZJ4 4579 aa6.65□□□□□ -1.35
CD44-209ENST00000433892 IGKV2D-30A0A075B6S6 120 aa6.65□□□□□ -1.35
CD44-209ENST00000433892 SPINK1P00995 79 aa6.62□□□□□ -1.35
CD44-209ENST00000433892 DYNC1H1Q14204 4646 aaKnown RBP6.59□□□□□ -1.35
CD44-209ENST00000433892 FAT1Q14517 4588 aa6.59□□□□□ -1.35
CD44-209ENST00000433892 A6NN06 94 aa6.59□□□□□ -1.36
CD44-209ENST00000433892 SEC61GP60059 68 aa6.57□□□□□ -1.36
CD44-209ENST00000433892 C7orf65Q6ZTY9 151 aa6.57□□□□□ -1.36
CD44-209ENST00000433892 KTN1-AS1Q86SY8 53 aa6.56□□□□□ -1.36
CD44-209ENST00000433892 LINC00304Q8N9R0 145 aa6.56□□□□□ -1.36
CD44-209ENST00000433892 A0A1B0GU69 56 aa6.56□□□□□ -1.36
CD44-209ENST00000433892 SMR3BP02814 79 aaPredicted RBP6.55□□□□□ -1.36
CD44-209ENST00000433892 APOBP04114 4563 aaKnown RBP6.51□□□□□ -1.37
CD44-209ENST00000433892 Q8N1X5 172 aa6.5□□□□□ -1.37
CD44-209ENST00000433892 PKHD1L1Q86WI1 4243 aa6.49□□□□□ -1.37
CD44-209ENST00000433892 RPS29P62273 56 aaKnown RBP6.49□□□□□ -1.37
CD44-209ENST00000433892 C9orf92A6NGG3 77 aa6.47□□□□□ -1.37
CD44-209ENST00000433892 UQCR11O14957 56 aa6.43□□□□□ -1.38
CD44-209ENST00000433892 SPATA8Q6RVD6 105 aa6.43□□□□□ -1.38
CD44-209ENST00000433892 MIR22HGQ0VDD5 57 aa6.42□□□□□ -1.38
CD44-209ENST00000433892 KRTAP10-4P60372 401 aaPredicted RBP6.42□□□□□ -1.38
CD44-209ENST00000433892 RBM12B-AS1Q9P1G2 102 aa6.42□□□□□ -1.38
CD44-209ENST00000433892 A0A1B0GVY2 172 aa6.41□□□□□ -1.38
CD44-209ENST00000433892 A8MUU9 505 aa6.4□□□□□ -1.38
CD44-209ENST00000433892 C20orf166-AS1Q96NR2 134 aa6.4□□□□□ -1.38
CD44-209ENST00000433892 KRTAP21-3Q3LHN1 58 aa6.39□□□□□ -1.39
CD44-209ENST00000433892 KMT2CQ8NEZ4 4911 aaKnown RBP6.38□□□□□ -1.39
CD44-209ENST00000433892 RYR2Q92736 4967 aa6.37□□□□□ -1.39
CD44-209ENST00000433892 KRTAP3-1Q9BYR8 98 aa6.34□□□□□ -1.39
CD44-209ENST00000433892 LRP1Q07954 4544 aaKnown RBP6.34□□□□□ -1.39
CD44-209ENST00000433892 PRAC1Q96KF2 57 aa6.32□□□□□ -1.4
CD44-209ENST00000433892 FLG2Q5D862 2391 aaPredicted RBP6.31□□□□□ -1.4
CD44-209ENST00000433892 FAT3Q8TDW7 4589 aa6.31□□□□□ -1.4
CD44-209ENST00000433892 ADM2Q7Z4H4 148 aa6.31□□□□□ -1.4
CD44-209ENST00000433892 TNXBP22105 4242 aa6.3□□□□□ -1.4
CD44-209ENST00000433892 HSPG2P98160 4391 aa6.27□□□□□ -1.41
CD44-209ENST00000433892 MYCBP2O75592 4640 aa6.23□□□□□ -1.41
CD44-209ENST00000433892 H0YAA0 97 aa6.23□□□□□ -1.41
CD44-209ENST00000433892 COX6B2Q6YFQ2 88 aa6.21□□□□□ -1.42
CD44-209ENST00000433892 A0A1B0GU33 70 aa6.2□□□□□ -1.42
CD44-209ENST00000433892 DMBT1Q9UGM3 2413 aaPredicted RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms