RNA–Protein interactions for RNA: ENST00000430889.2

HOXC4-202, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,666 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-202ENST00000430889 KRTAP13-2Q52LG2 175 aa8.16□□□□□ -1.1
HOXC4-202ENST00000430889 FAM229BQ4G0N7 80 aa8.15□□□□□ -1.1
HOXC4-202ENST00000430889 A0A087X002 238 aa8.14□□□□□ -1.11
HOXC4-202ENST00000430889 TRAV22A0A0B4J277 110 aa8.14□□□□□ -1.11
HOXC4-202ENST00000430889 H0Y9P7 68 aa8.14□□□□□ -1.11
HOXC4-202ENST00000430889 KRTAP1-4P0C5Y4 121 aa8.14□□□□□ -1.11
HOXC4-202ENST00000430889 IGHV6-1A0A0B4J1U7 121 aa8.12□□□□□ -1.11
HOXC4-202ENST00000430889 LINC00208Q96KT6 92 aa8.12□□□□□ -1.11
HOXC4-202ENST00000430889 NOTCH2NLQ7Z3S9 236 aa8.11□□□□□ -1.11
HOXC4-202ENST00000430889 CYP4F30PQ9H0H9 118 aa8.11□□□□□ -1.11
HOXC4-202ENST00000430889 DYNC1H1Q14204 4646 aaKnown RBP8.11□□□□□ -1.11
HOXC4-202ENST00000430889 TP53AIP1Q9HCN2 124 aa8.11□□□□□ -1.11
HOXC4-202ENST00000430889 PKHD1P08F94 4074 aa8.1□□□□□ -1.11
HOXC4-202ENST00000430889 KRTAP4-8Q9BYQ9 185 aa8.1□□□□□ -1.11
HOXC4-202ENST00000430889 SMIM26A0A096LP01 95 aa8.09□□□□□ -1.11
HOXC4-202ENST00000430889 CDK2AP2O75956 126 aa8.09□□□□□ -1.11
HOXC4-202ENST00000430889 FP248Q71RG6 208 aaPredicted RBP8.09□□□□□ -1.11
HOXC4-202ENST00000430889 MRPL34Q9BQ48 92 aaKnown RBP8.08□□□□□ -1.12
HOXC4-202ENST00000430889 C1orf64Q8NEQ6 169 aa8.07□□□□□ -1.12
HOXC4-202ENST00000430889 RYR2Q92736 4967 aa8.05□□□□□ -1.12
HOXC4-202ENST00000430889 LCE2CQ5TA81 110 aa8.05□□□□□ -1.12
HOXC4-202ENST00000430889 LINC00336Q6ZUF6 198 aa8.05□□□□□ -1.12
HOXC4-202ENST00000430889 SPANXA2-OT1Q8N9U9 137 aa8.05□□□□□ -1.12
HOXC4-202ENST00000430889 KMT2CQ8NEZ4 4911 aaKnown RBP8.05□□□□□ -1.12
HOXC4-202ENST00000430889 C4orf26Q17RF5 130 aa8.05□□□□□ -1.12
HOXC4-202ENST00000430889 SPINK6Q6UWN8 80 aa8.05□□□□□ -1.12
HOXC4-202ENST00000430889 A0A1B0GVY2 172 aa8.04□□□□□ -1.12
HOXC4-202ENST00000430889 XP32Q5T750 250 aa8.03□□□□□ -1.12
HOXC4-202ENST00000430889 C8orf87E5RJ46 101 aa8.02□□□□□ -1.13
HOXC4-202ENST00000430889 C1orf195Q5TG92 126 aa8.02□□□□□ -1.13
HOXC4-202ENST00000430889 KRTAP13-3Q3SY46 172 aa8.02□□□□□ -1.13
HOXC4-202ENST00000430889 APOBP04114 4563 aaKnown RBP8.01□□□□□ -1.13
HOXC4-202ENST00000430889 PRR4Q16378 134 aa7.98□□□□□ -1.13
HOXC4-202ENST00000430889 NDUFS5O43920 106 aa7.97□□□□□ -1.13
HOXC4-202ENST00000430889 LORP23490 312 aaPredicted RBP7.97□□□□□ -1.13
HOXC4-202ENST00000430889 PLA2G1BP04054 148 aaKnown RBP7.96□□□□□ -1.13
HOXC4-202ENST00000430889 IGLV7-46A0A075B6I9 117 aa7.95□□□□□ -1.14
HOXC4-202ENST00000430889 Q5W150 140 aa7.95□□□□□ -1.14
HOXC4-202ENST00000430889 LIMD2Q9BT23 127 aa7.95□□□□□ -1.14
HOXC4-202ENST00000430889 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.95□□□□□ -1.14
HOXC4-202ENST00000430889 KRTAP10-4P60372 401 aaPredicted RBP7.95□□□□□ -1.14
HOXC4-202ENST00000430889 KRTAP16-1A8MUX0 517 aa7.94□□□□□ -1.14
HOXC4-202ENST00000430889 Q8N9P0 234 aaPredicted RBP7.94□□□□□ -1.14
HOXC4-202ENST00000430889 KRTAP9-2Q9BYQ4 174 aa7.93□□□□□ -1.14
HOXC4-202ENST00000430889 PKHD1L1Q86WI1 4243 aa7.93□□□□□ -1.14
HOXC4-202ENST00000430889 LINC00313P59037 77 aa7.92□□□□□ -1.14
HOXC4-202ENST00000430889 TYMSOSQ8TAI1 123 aa7.92□□□□□ -1.14
HOXC4-202ENST00000430889 RYR3Q15413 4870 aa7.92□□□□□ -1.14
HOXC4-202ENST00000430889 SPINK1P00995 79 aa7.91□□□□□ -1.14
HOXC4-202ENST00000430889 PCOTHQ58A44 107 aa7.9□□□□□ -1.14
HOXC4-202ENST00000430889 LOC101927531A0A1B0GV80 90 aa7.89□□□□□ -1.15
HOXC4-202ENST00000430889 FAT1Q14517 4588 aa7.89□□□□□ -1.15
HOXC4-202ENST00000430889 KRTAP9-6A0A140TA67 174 aa7.89□□□□□ -1.15
HOXC4-202ENST00000430889 J3QL48 77 aa7.89□□□□□ -1.15
HOXC4-202ENST00000430889 RPS29P62273 56 aaKnown RBP7.89□□□□□ -1.15
HOXC4-202ENST00000430889 Q1T7F1 81 aa7.88□□□□□ -1.15
HOXC4-202ENST00000430889 PRR26Q8N8Z3 221 aa7.87□□□□□ -1.15
HOXC4-202ENST00000430889 MPLKIPQ8TAP9 179 aa7.87□□□□□ -1.15
HOXC4-202ENST00000430889 SMR3BP02814 79 aaPredicted RBP7.86□□□□□ -1.15
HOXC4-202ENST00000430889 LINC00304Q8N9R0 145 aa7.85□□□□□ -1.15
HOXC4-202ENST00000430889 FAM229AH3BQW9 127 aa7.84□□□□□ -1.15
HOXC4-202ENST00000430889 SPAG11AQ6PDA7 123 aa7.83□□□□□ -1.16
HOXC4-202ENST00000430889 COA5Q86WW8 74 aa7.83□□□□□ -1.16
HOXC4-202ENST00000430889 IGKV2-30P06310 120 aa7.79□□□□□ -1.16
HOXC4-202ENST00000430889 HRES1P13985 223 aa7.76□□□□□ -1.17
HOXC4-202ENST00000430889 V9GYY9 64 aa7.75□□□□□ -1.17
HOXC4-202ENST00000430889 RETNLBQ9BQ08 111 aa7.73□□□□□ -1.17
HOXC4-202ENST00000430889 DMAC1Q96GE9 116 aa7.7□□□□□ -1.18
HOXC4-202ENST00000430889 HSPG2P98160 4391 aa7.7□□□□□ -1.18
HOXC4-202ENST00000430889 RYR1P21817 5038 aa7.69□□□□□ -1.18
HOXC4-202ENST00000430889 PSPHP1O15172 72 aa7.68□□□□□ -1.18
HOXC4-202ENST00000430889 LCE3BQ5TA77 95 aa7.68□□□□□ -1.18
HOXC4-202ENST00000430889 A8MUN3 132 aa7.67□□□□□ -1.18
HOXC4-202ENST00000430889 Q5VV11 94 aa7.67□□□□□ -1.18
HOXC4-202ENST00000430889 PRO0628Q9UI54 55 aa7.67□□□□□ -1.18
HOXC4-202ENST00000430889 TNXBP22105 4242 aa7.67□□□□□ -1.18
HOXC4-202ENST00000430889 ACYP2P14621 99 aa7.64□□□□□ -1.19
HOXC4-202ENST00000430889 C20orf166-AS1Q96NR2 134 aa7.64□□□□□ -1.19
HOXC4-202ENST00000430889 LINC01558Q9Y6Z2 57 aa7.64□□□□□ -1.19
HOXC4-202ENST00000430889 A8MUU9 505 aa7.63□□□□□ -1.19
HOXC4-202ENST00000430889 EPPK1P58107 5090 aaKnown RBP7.63□□□□□ -1.19
HOXC4-202ENST00000430889 FAT3Q8TDW7 4589 aa7.63□□□□□ -1.19
HOXC4-202ENST00000430889 FLG2Q5D862 2391 aaPredicted RBP7.63□□□□□ -1.19
HOXC4-202ENST00000430889 BRK1Q8WUW1 75 aa7.62□□□□□ -1.19
HOXC4-202ENST00000430889 IGKV2D-30A0A075B6S6 120 aa7.61□□□□□ -1.19
HOXC4-202ENST00000430889 LRP1Q07954 4544 aaKnown RBP7.6□□□□□ -1.19
HOXC4-202ENST00000430889 KRTAP10-8P60410 259 aa7.6□□□□□ -1.19
HOXC4-202ENST00000430889 PRR15LQ9BU68 103 aa7.6□□□□□ -1.19
HOXC4-202ENST00000430889 Q75L30 129 aa7.59□□□□□ -1.19
HOXC4-202ENST00000430889 C7orf65Q6ZTY9 151 aa7.57□□□□□ -1.2
HOXC4-202ENST00000430889 C9orf92A6NGG3 77 aa7.57□□□□□ -1.2
HOXC4-202ENST00000430889 Q5VSD8 79 aa7.57□□□□□ -1.2
HOXC4-202ENST00000430889 Q8N1X5 172 aa7.57□□□□□ -1.2
HOXC4-202ENST00000430889 KRTAP17-1Q9BYP8 105 aa7.57□□□□□ -1.2
HOXC4-202ENST00000430889 BIRC6Q9NR09 4857 aa7.55□□□□□ -1.2
HOXC4-202ENST00000430889 KRTAP4-8A0A0G2JLE6 195 aa7.54□□□□□ -1.2
HOXC4-202ENST00000430889 KRTAP9-9Q9BYP9 154 aa7.52□□□□□ -1.21
HOXC4-202ENST00000430889 KRTAP9-4Q9BYQ2 154 aa7.52□□□□□ -1.21
HOXC4-202ENST00000430889 CHKB-CPT1BH3BT56 60 aa7.51□□□□□ -1.21
HOXC4-202ENST00000430889 KRTAP4-12Q9BQ66 201 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms