RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 TRPM2O94759 1503 aa0.58□□□□□ -2.32
CCDC88A-206ENST00000430086 FLNBO75369 2602 aaKnown RBP0.57□□□□□ -2.32
CCDC88A-206ENST00000430086 MYCBP2O75592 4640 aa0.57□□□□□ -2.32
CCDC88A-206ENST00000430086 DMBT1Q9UGM3 2413 aaPredicted RBP0.56□□□□□ -2.32
CCDC88A-206ENST00000430086 PHGR1C9JFL3 82 aa0.56□□□□□ -2.32
CCDC88A-206ENST00000430086 M0QY20 66 aa0.56□□□□□ -2.32
CCDC88A-206ENST00000430086 NDUFA1O15239 70 aa0.56□□□□□ -2.32
CCDC88A-206ENST00000430086 GPR98Q8WXG9 6306 aa0.56□□□□□ -2.32
CCDC88A-206ENST00000430086 KMT2AQ03164 3969 aa0.55□□□□□ -2.32
CCDC88A-206ENST00000430086 MAST4O15021 2626 aa0.55□□□□□ -2.32
CCDC88A-206ENST00000430086 NSD1Q96L73 2696 aaPredicted RBP0.55□□□□□ -2.32
CCDC88A-206ENST00000430086 NFAT5O94916 1531 aa0.55□□□□□ -2.32
CCDC88A-206ENST00000430086 DCHS2Q6V1P9 2916 aa0.54□□□□□ -2.32
CCDC88A-206ENST00000430086 MMP24-AS1A0A0U1RRL7 71 aa0.54□□□□□ -2.32
CCDC88A-206ENST00000430086 NF1P21359 2839 aa0.54□□□□□ -2.32
CCDC88A-206ENST00000430086 LPAP08519 4548 aa0.52□□□□□ -2.33
CCDC88A-206ENST00000430086 FAT4Q6V0I7 4981 aa0.52□□□□□ -2.33
CCDC88A-206ENST00000430086 A8MTW9 85 aa0.52□□□□□ -2.33
CCDC88A-206ENST00000430086 ATP7AQ04656 1500 aa0.52□□□□□ -2.33
CCDC88A-206ENST00000430086 FLNAP21333 2647 aaKnown RBP0.51□□□□□ -2.33
CCDC88A-206ENST00000430086 FLNCQ14315 2725 aa0.5□□□□□ -2.33
CCDC88A-206ENST00000430086 SPTBN4Q9H254 2564 aa0.5□□□□□ -2.33
CCDC88A-206ENST00000430086 CLTCL1P53675 1640 aa0.49□□□□□ -2.33
CCDC88A-206ENST00000430086 SAMD9LQ8IVG5 1584 aa0.48□□□□□ -2.33
CCDC88A-206ENST00000430086 MTORP42345 2549 aa0.47□□□□□ -2.33
CCDC88A-206ENST00000430086 SRRM2Q9UQ35 2752 aaKnown RBP0.46□□□□□ -2.34
CCDC88A-206ENST00000430086 M0QZ58 72 aa0.46□□□□□ -2.34
CCDC88A-206ENST00000430086 TNP1P09430 55 aa0.46□□□□□ -2.34
CCDC88A-206ENST00000430086 TOP2AP11388 1531 aaKnown RBP0.45□□□□□ -2.34
CCDC88A-206ENST00000430086 SPRR2AP35326 72 aa0.45□□□□□ -2.34
CCDC88A-206ENST00000430086 GCN1Q92616 2671 aaKnown RBP0.45□□□□□ -2.34
CCDC88A-206ENST00000430086 LYSTQ99698 3801 aa0.44□□□□□ -2.34
CCDC88A-206ENST00000430086 DEFB110Q30KQ9 67 aa0.44□□□□□ -2.34
CCDC88A-206ENST00000430086 ZZEF1O43149 2961 aa0.44□□□□□ -2.34
CCDC88A-206ENST00000430086 SPG11Q96JI7 2443 aa0.42□□□□□ -2.34
CCDC88A-206ENST00000430086 COL7A1Q02388 2944 aa0.42□□□□□ -2.34
CCDC88A-206ENST00000430086 SONP18583 2426 aaKnown RBP0.41□□□□□ -2.34
CCDC88A-206ENST00000430086 ACACAQ13085 2346 aa0.41□□□□□ -2.34
CCDC88A-206ENST00000430086 COL6A3P12111 3177 aa0.41□□□□□ -2.34
CCDC88A-206ENST00000430086 A0A0C4DFX4 3053 aa0.4□□□□□ -2.35
CCDC88A-206ENST00000430086 SETD2Q9BYW2 2564 aaPredicted RBP0.4□□□□□ -2.35
CCDC88A-206ENST00000430086 LRRK2Q5S007 2527 aa0.4□□□□□ -2.35
CCDC88A-206ENST00000430086 HSPG2P98160 4391 aa0.39□□□□□ -2.35
CCDC88A-206ENST00000430086 ANKRD11Q6UB99 2663 aaPredicted RBP0.39□□□□□ -2.35
CCDC88A-206ENST00000430086 MUC5ACP98088 5654 aa0.38□□□□□ -2.35
CCDC88A-206ENST00000430086 PDZD2O15018 2839 aa0.38□□□□□ -2.35
CCDC88A-206ENST00000430086 DMXL1Q9Y485 3027 aa0.38□□□□□ -2.35
CCDC88A-206ENST00000430086 HECTD4Q9Y4D8 3996 aa0.38□□□□□ -2.35
CCDC88A-206ENST00000430086 UTP20O75691 2785 aaKnown RBP0.38□□□□□ -2.35
CCDC88A-206ENST00000430086 TENM2Q9NT68 2774 aa0.38□□□□□ -2.35
CCDC88A-206ENST00000430086 HMCN2Q8NDA2 5059 aa0.36□□□□□ -2.35
CCDC88A-206ENST00000430086 ANKHD1Q8IWZ3 2542 aaKnown RBP0.36□□□□□ -2.35
CCDC88A-206ENST00000430086 EPG5Q9HCE0 2579 aa0.36□□□□□ -2.35
CCDC88A-206ENST00000430086 KRTAP6-2Q3LI66 62 aa0.36□□□□□ -2.35
CCDC88A-206ENST00000430086 PKD1P98161 4303 aa0.36□□□□□ -2.35
CCDC88A-206ENST00000430086 STAB1Q9NY15 2570 aa0.35□□□□□ -2.35
CCDC88A-206ENST00000430086 MDN1Q9NU22 5596 aa0.35□□□□□ -2.35
CCDC88A-206ENST00000430086 MT1AP04731 61 aa0.34□□□□□ -2.36
CCDC88A-206ENST00000430086 RIF1Q5UIP0 2472 aaKnown RBP0.34□□□□□ -2.36
CCDC88A-206ENST00000430086 TACC2O95359 2948 aa0.34□□□□□ -2.36
CCDC88A-206ENST00000430086 POLR2KP53803 58 aaKnown RBP0.33□□□□□ -2.36
CCDC88A-206ENST00000430086 VPS13BQ7Z7G8 4022 aa0.33□□□□□ -2.36
CCDC88A-206ENST00000430086 FAM186AA6NE01 2351 aa0.33□□□□□ -2.36
CCDC88A-206ENST00000430086 ZANQ9Y493 2812 aa0.32□□□□□ -2.36
CCDC88A-206ENST00000430086 SPRR2EP22531 72 aa0.32□□□□□ -2.36
CCDC88A-206ENST00000430086 FASNP49327 2511 aaKnown RBP0.31□□□□□ -2.36
CCDC88A-206ENST00000430086 TGP01266 2768 aa0.31□□□□□ -2.36
CCDC88A-206ENST00000430086 MACF1Q9UPN3 7388 aaKnown RBP0.31□□□□□ -2.36
CCDC88A-206ENST00000430086 MAP1AP78559 2803 aaPredicted RBP0.31□□□□□ -2.36
CCDC88A-206ENST00000430086 SYNE2Q8WXH0 6885 aaKnown RBP0.31□□□□□ -2.36
CCDC88A-206ENST00000430086 KMT2DO14686 5537 aa0.3□□□□□ -2.36
CCDC88A-206ENST00000430086 STAB2Q8WWQ8 2551 aa0.3□□□□□ -2.36
CCDC88A-206ENST00000430086 FSIP2Q5CZC0 6907 aa0.3□□□□□ -2.36
CCDC88A-206ENST00000430086 LRP1BQ9NZR2 4599 aa0.3□□□□□ -2.36
CCDC88A-206ENST00000430086 NBEAQ8NFP9 2946 aa0.3□□□□□ -2.36
CCDC88A-206ENST00000430086 NBEAL1Q6ZS30 2694 aa0.29□□□□□ -2.36
CCDC88A-206ENST00000430086 CLPSL2Q6UWE3 100 aa0.29□□□□□ -2.36
CCDC88A-206ENST00000430086 CUBNO60494 3623 aa0.28□□□□□ -2.36
CCDC88A-206ENST00000430086 HTTP42858 3142 aa0.28□□□□□ -2.37
CCDC88A-206ENST00000430086 HIVEP1P15822 2718 aa0.28□□□□□ -2.37
CCDC88A-206ENST00000430086 PKHD1P08F94 4074 aa0.27□□□□□ -2.37
CCDC88A-206ENST00000430086 SPRR2GQ9BYE4 73 aa0.27□□□□□ -2.37
CCDC88A-206ENST00000430086 FLGP20930 4061 aaPredicted RBP0.27□□□□□ -2.37
CCDC88A-206ENST00000430086 LRP2P98164 4655 aa0.27□□□□□ -2.37
CCDC88A-206ENST00000430086 TEP1Q99973 2627 aaKnown RBP0.27□□□□□ -2.37
CCDC88A-206ENST00000430086 NBEAL2Q6ZNJ1 2754 aa0.27□□□□□ -2.37
CCDC88A-206ENST00000430086 ACACBO00763 2458 aa0.26□□□□□ -2.37
CCDC88A-206ENST00000430086 SACSQ9NZJ4 4579 aa0.26□□□□□ -2.37
CCDC88A-206ENST00000430086 COL6A5A8TX70 2615 aa0.26□□□□□ -2.37
CCDC88A-206ENST00000430086 KALRNO60229 2985 aa0.26□□□□□ -2.37
CCDC88A-206ENST00000430086 SPART-AS1P0CW21 52 aa0.25□□□□□ -2.37
CCDC88A-206ENST00000430086 SPRR2FQ96RM1 72 aa0.24□□□□□ -2.37
CCDC88A-206ENST00000430086 DNAH9Q9NYC9 4486 aa0.23□□□□□ -2.37
CCDC88A-206ENST00000430086 SNRPGP62308 76 aaKnown RBP0.23□□□□□ -2.37
CCDC88A-206ENST00000430086 SVEP1Q4LDE5 3571 aa0.23□□□□□ -2.37
CCDC88A-206ENST00000430086 DNAH3Q8TD57 4116 aa0.23□□□□□ -2.37
CCDC88A-206ENST00000430086 MYO18BQ8IUG5 2567 aa0.22□□□□□ -2.37
CCDC88A-206ENST00000430086 ANK3Q12955 4377 aaKnown RBP0.22□□□□□ -2.37
CCDC88A-206ENST00000430086 RANBP2P49792 3224 aaKnown RBP0.21□□□□□ -2.38
CCDC88A-206ENST00000430086 MGAM2Q2M2H8 2515 aa0.2□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms