RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 SPTSSBQ8NFR3 76 aa6.48□□□□□ -1.37
CUX1-205ENST00000425244 ZCCHC13Q8WW36 166 aaKnown RBP6.48□□□□□ -1.37
CUX1-205ENST00000425244 MP68P56378 58 aa6.47□□□□□ -1.37
CUX1-205ENST00000425244 ATP11AUNQ6ZP68 121 aa6.47□□□□□ -1.37
CUX1-205ENST00000425244 KRTAP29-1A8MX34 341 aaPredicted RBP6.46□□□□□ -1.37
CUX1-205ENST00000425244 LINC00208Q96KT6 92 aa6.46□□□□□ -1.38
CUX1-205ENST00000425244 ANAPC11Q9NYG5 84 aa6.46□□□□□ -1.38
CUX1-205ENST00000425244 PSORS1C2Q9UIG4 136 aa6.45□□□□□ -1.38
CUX1-205ENST00000425244 CHKB-CPT1BH3BT56 60 aa6.45□□□□□ -1.38
CUX1-205ENST00000425244 CYP4F30PQ9H0H9 118 aa6.45□□□□□ -1.38
CUX1-205ENST00000425244 C7orf65Q6ZTY9 151 aa6.44□□□□□ -1.38
CUX1-205ENST00000425244 KRTAP10-1P60331 282 aa6.44□□□□□ -1.38
CUX1-205ENST00000425244 H0Y9P7 68 aa6.43□□□□□ -1.38
CUX1-205ENST00000425244 MOBPQ13875 183 aa6.43□□□□□ -1.38
CUX1-205ENST00000425244 LCA10Q71F78 164 aa6.43□□□□□ -1.38
CUX1-205ENST00000425244 NDUFB1O75438 58 aa6.43□□□□□ -1.38
CUX1-205ENST00000425244 LRP1BQ9NZR2 4599 aa6.42□□□□□ -1.38
CUX1-205ENST00000425244 CIRBP-AS1Q8TBR5 109 aa6.41□□□□□ -1.38
CUX1-205ENST00000425244 ZNF706Q9Y5V0 76 aaPredicted RBP6.41□□□□□ -1.38
CUX1-205ENST00000425244 MMP24-AS1A0A0U1RRL7 71 aa6.4□□□□□ -1.38
CUX1-205ENST00000425244 LINC00483Q53H64 154 aa6.4□□□□□ -1.38
CUX1-205ENST00000425244 PLAC8Q9NZF1 115 aa6.39□□□□□ -1.39
CUX1-205ENST00000425244 ZNF861PO60384 105 aa6.39□□□□□ -1.39
CUX1-205ENST00000425244 Q96NJ1 140 aa6.39□□□□□ -1.39
CUX1-205ENST00000425244 DYNC1H1Q14204 4646 aaKnown RBP6.38□□□□□ -1.39
CUX1-205ENST00000425244 LIMD2Q9BT23 127 aa6.38□□□□□ -1.39
CUX1-205ENST00000425244 IGHV6-1A0A0B4J1U7 121 aa6.38□□□□□ -1.39
CUX1-205ENST00000425244 Q8N9P0 234 aaPredicted RBP6.37□□□□□ -1.39
CUX1-205ENST00000425244 CDK2AP2O75956 126 aa6.36□□□□□ -1.39
CUX1-205ENST00000425244 PRR15LQ9BU68 103 aa6.36□□□□□ -1.39
CUX1-205ENST00000425244 VPS13BQ7Z7G8 4022 aa6.35□□□□□ -1.39
CUX1-205ENST00000425244 Q75L30 129 aa6.35□□□□□ -1.39
CUX1-205ENST00000425244 A6NED7 52 aa6.35□□□□□ -1.39
CUX1-205ENST00000425244 C8orf17Q9NRJ1 99 aa6.35□□□□□ -1.39
CUX1-205ENST00000425244 H3BPC8 53 aa6.34□□□□□ -1.4
CUX1-205ENST00000425244 SPINK6Q6UWN8 80 aa6.34□□□□□ -1.4
CUX1-205ENST00000425244 CDC42SE1Q9NRR8 79 aa6.34□□□□□ -1.4
CUX1-205ENST00000425244 Q6ZSA8 131 aa6.33□□□□□ -1.4
CUX1-205ENST00000425244 A0A1B0GVX0 72 aa6.33□□□□□ -1.4
CUX1-205ENST00000425244 A0A1B0GVY2 172 aa6.32□□□□□ -1.4
CUX1-205ENST00000425244 IGLV7-43P04211 117 aa6.32□□□□□ -1.4
CUX1-205ENST00000425244 SMR3BP02814 79 aaPredicted RBP6.32□□□□□ -1.4
CUX1-205ENST00000425244 PCOTHQ58A44 107 aa6.32□□□□□ -1.4
CUX1-205ENST00000425244 FAT1Q14517 4588 aa6.31□□□□□ -1.4
CUX1-205ENST00000425244 A0A087X002 238 aa6.31□□□□□ -1.4
CUX1-205ENST00000425244 NOTCH2NLQ7Z3S9 236 aa6.31□□□□□ -1.4
CUX1-205ENST00000425244 APOBP04114 4563 aaKnown RBP6.29□□□□□ -1.4
CUX1-205ENST00000425244 LOC101927531A0A1B0GV80 90 aa6.29□□□□□ -1.4
CUX1-205ENST00000425244 SPANXA2-OT1Q8N9U9 137 aa6.29□□□□□ -1.4
CUX1-205ENST00000425244 TP53AIP1Q9HCN2 124 aa6.29□□□□□ -1.4
CUX1-205ENST00000425244 ASB16-AS1Q495Z4 193 aa6.29□□□□□ -1.4
CUX1-205ENST00000425244 MRPL34Q9BQ48 92 aaKnown RBP6.27□□□□□ -1.41
CUX1-205ENST00000425244 LINC01554Q52M75 96 aa6.27□□□□□ -1.41
CUX1-205ENST00000425244 EPPK1P58107 5090 aaKnown RBP6.26□□□□□ -1.41
CUX1-205ENST00000425244 LINC00313P59037 77 aa6.25□□□□□ -1.41
CUX1-205ENST00000425244 PRAC1Q96KF2 57 aa6.23□□□□□ -1.41
CUX1-205ENST00000425244 IGLV7-46A0A075B6I9 117 aa6.22□□□□□ -1.41
CUX1-205ENST00000425244 COA5Q86WW8 74 aa6.22□□□□□ -1.41
CUX1-205ENST00000425244 A0A0A0MQY5 61 aa6.2□□□□□ -1.42
CUX1-205ENST00000425244 SSBP3-AS1Q7Z2R9 100 aa6.2□□□□□ -1.42
CUX1-205ENST00000425244 Q5W150 140 aa6.18□□□□□ -1.42
CUX1-205ENST00000425244 KIAA1109Q2LD37 5005 aa6.18□□□□□ -1.42
CUX1-205ENST00000425244 HSPG2P98160 4391 aa6.17□□□□□ -1.42
CUX1-205ENST00000425244 KRTAP13-2Q52LG2 175 aa6.17□□□□□ -1.42
CUX1-205ENST00000425244 RETNLBQ9BQ08 111 aa6.17□□□□□ -1.42
CUX1-205ENST00000425244 LINC01558Q9Y6Z2 57 aa6.16□□□□□ -1.42
CUX1-205ENST00000425244 SPINK7P58062 85 aa6.15□□□□□ -1.42
CUX1-205ENST00000425244 ADM2Q7Z4H4 148 aa6.15□□□□□ -1.42
CUX1-205ENST00000425244 PLA2G1BP04054 148 aaKnown RBP6.14□□□□□ -1.43
CUX1-205ENST00000425244 SPAG11AQ6PDA7 123 aa6.13□□□□□ -1.43
CUX1-205ENST00000425244 HRES1P13985 223 aa6.12□□□□□ -1.43
CUX1-205ENST00000425244 RYR1P21817 5038 aa6.11□□□□□ -1.43
CUX1-205ENST00000425244 KRTAP13-3Q3SY46 172 aa6.11□□□□□ -1.43
CUX1-205ENST00000425244 FAM229AH3BQW9 127 aa6.09□□□□□ -1.43
CUX1-205ENST00000425244 KRTAP1-4P0C5Y4 121 aa6.09□□□□□ -1.43
CUX1-205ENST00000425244 Q5VSD8 79 aa6.08□□□□□ -1.44
CUX1-205ENST00000425244 LRP1Q07954 4544 aaKnown RBP6.08□□□□□ -1.44
CUX1-205ENST00000425244 KRTAP10-4P60372 401 aaPredicted RBP6.07□□□□□ -1.44
CUX1-205ENST00000425244 FLG2Q5D862 2391 aaPredicted RBP6.06□□□□□ -1.44
CUX1-205ENST00000425244 TYMSOSQ8TAI1 123 aa6.06□□□□□ -1.44
CUX1-205ENST00000425244 MYCBP2O75592 4640 aa6.05□□□□□ -1.44
CUX1-205ENST00000425244 KRTAP17-1Q9BYP8 105 aa6.05□□□□□ -1.44
CUX1-205ENST00000425244 PKHD1L1Q86WI1 4243 aa6.02□□□□□ -1.45
CUX1-205ENST00000425244 ACYP2P14621 99 aa6.02□□□□□ -1.45
CUX1-205ENST00000425244 IGKV2D-30A0A075B6S6 120 aa6.01□□□□□ -1.45
CUX1-205ENST00000425244 KRTAP16-1A8MUX0 517 aa6.01□□□□□ -1.45
CUX1-205ENST00000425244 IGKV2-30P06310 120 aa6.01□□□□□ -1.45
CUX1-205ENST00000425244 SPINK1P00995 79 aa5.98□□□□□ -1.45
CUX1-205ENST00000425244 DMAC1Q96GE9 116 aa5.98□□□□□ -1.45
CUX1-205ENST00000425244 CSAG1Q6PB30 78 aa5.97□□□□□ -1.45
CUX1-205ENST00000425244 Q8N1X5 172 aa5.96□□□□□ -1.46
CUX1-205ENST00000425244 LINC00304Q8N9R0 145 aa5.96□□□□□ -1.46
CUX1-205ENST00000425244 KRTAP4-5Q9BYR2 181 aa5.93□□□□□ -1.46
CUX1-205ENST00000425244 FAT3Q8TDW7 4589 aa5.93□□□□□ -1.46
CUX1-205ENST00000425244 DMBT1Q9UGM3 2413 aaPredicted RBP5.92□□□□□ -1.46
CUX1-205ENST00000425244 TNXBP22105 4242 aa5.92□□□□□ -1.46
CUX1-205ENST00000425244 C9orf92A6NGG3 77 aa5.89□□□□□ -1.47
CUX1-205ENST00000425244 SPATA8Q6RVD6 105 aa5.89□□□□□ -1.47
CUX1-205ENST00000425244 ABCA13Q86UQ4 5058 aa5.88□□□□□ -1.47
CUX1-205ENST00000425244 BIRC6Q9NR09 4857 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms