RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 DSCR10P59022 87 aa9.22□□□□□ -0.93
COL7A1-202ENST00000422991 A8MWP4 228 aa9.21□□□□□ -0.94
COL7A1-202ENST00000422991 UBL5Q9BZL1 73 aa9.21□□□□□ -0.94
COL7A1-202ENST00000422991 MUC17Q685J3 4493 aa9.2□□□□□ -0.94
COL7A1-202ENST00000422991 IGKV3D-7A0A0C4DH55 119 aa9.19□□□□□ -0.94
COL7A1-202ENST00000422991 NDUFB1O75438 58 aa9.19□□□□□ -0.94
COL7A1-202ENST00000422991 FAM240AA0A1B0GVK7 77 aa9.18□□□□□ -0.94
COL7A1-202ENST00000422991 BPY2O14599 106 aa9.18□□□□□ -0.94
COL7A1-202ENST00000422991 LINC00313P59037 77 aa9.18□□□□□ -0.94
COL7A1-202ENST00000422991 NOTCH2NLQ7Z3S9 236 aa9.18□□□□□ -0.94
COL7A1-202ENST00000422991 MUC2Q02817 5179 aa9.17□□□□□ -0.94
COL7A1-202ENST00000422991 C8orf87E5RJ46 101 aa9.17□□□□□ -0.94
COL7A1-202ENST00000422991 ACYP1P07311 99 aa9.17□□□□□ -0.94
COL7A1-202ENST00000422991 RPL37P61927 97 aaKnown RBP9.16□□□□□ -0.94
COL7A1-202ENST00000422991 KRTAP16-1A8MUX0 517 aa9.15□□□□□ -0.94
COL7A1-202ENST00000422991 PRR15Q8IV56 129 aa9.15□□□□□ -0.94
COL7A1-202ENST00000422991 SEC61BP60468 96 aaKnown RBP9.14□□□□□ -0.95
COL7A1-202ENST00000422991 K7EQZ3 153 aa9.13□□□□□ -0.95
COL7A1-202ENST00000422991 Q75L30 129 aa9.13□□□□□ -0.95
COL7A1-202ENST00000422991 C20orf166-AS1Q96NR2 134 aa9.13□□□□□ -0.95
COL7A1-202ENST00000422991 C8orf17Q9NRJ1 99 aa9.12□□□□□ -0.95
COL7A1-202ENST00000422991 A8MUU9 505 aa9.11□□□□□ -0.95
COL7A1-202ENST00000422991 Q8N9L7 120 aa9.09□□□□□ -0.95
COL7A1-202ENST00000422991 MMP24-AS1A0A0U1RRL7 71 aa9.08□□□□□ -0.96
COL7A1-202ENST00000422991 PCOTHQ58A44 107 aa9.08□□□□□ -0.96
COL7A1-202ENST00000422991 CXCL6P80162 114 aa9.07□□□□□ -0.96
COL7A1-202ENST00000422991 A0A0U1RQV1 116 aa9.06□□□□□ -0.96
COL7A1-202ENST00000422991 J3QR89 54 aa9.06□□□□□ -0.96
COL7A1-202ENST00000422991 ATP5EP2Q5VTU8 51 aa9.01□□□□□ -0.97
COL7A1-202ENST00000422991 ATP11AUNQ6ZP68 121 aa9.01□□□□□ -0.97
COL7A1-202ENST00000422991 TMEM254Q8TBM7 123 aa9.01□□□□□ -0.97
COL7A1-202ENST00000422991 KRTAP4-1Q9BYQ7 146 aa9.01□□□□□ -0.97
COL7A1-202ENST00000422991 hDV103S1A0JD37 113 aa9□□□□□ -0.97
COL7A1-202ENST00000422991 Q8N9P0 234 aaPredicted RBP9□□□□□ -0.97
COL7A1-202ENST00000422991 LINC00643Q86TS7 51 aa8.98□□□□□ -0.97
COL7A1-202ENST00000422991 MRPL34Q9BQ48 92 aaKnown RBP8.98□□□□□ -0.97
COL7A1-202ENST00000422991 WFDC13Q8IUB5 93 aa8.97□□□□□ -0.97
COL7A1-202ENST00000422991 CASC2Q6XLA1 102 aa8.96□□□□□ -0.98
COL7A1-202ENST00000422991 HCG22E2RYF7 251 aa8.95□□□□□ -0.98
COL7A1-202ENST00000422991 K7ERU9 68 aa8.93□□□□□ -0.98
COL7A1-202ENST00000422991 ZCCHC13Q8WW36 166 aaKnown RBP8.91□□□□□ -0.98
COL7A1-202ENST00000422991 FAT4Q6V0I7 4981 aa8.9□□□□□ -0.98
COL7A1-202ENST00000422991 NDUFS5O43920 106 aa8.88□□□□□ -0.99
COL7A1-202ENST00000422991 HIST1H4AP62805 103 aaKnown RBP8.87□□□□□ -0.99
COL7A1-202ENST00000422991 LCE2AQ5TA79 106 aaPredicted RBP8.84□□□□□ -0.99
COL7A1-202ENST00000422991 A0A087WVE0 104 aa8.81□□□□□ -1
COL7A1-202ENST00000422991 Q5W150 140 aa8.78□□□□□ -1
COL7A1-202ENST00000422991 KRTAP19-2Q3LHN2 52 aa8.74□□□□□ -1.01
COL7A1-202ENST00000422991 TP53AIP1Q9HCN2 124 aa8.74□□□□□ -1.01
COL7A1-202ENST00000422991 MT-ATP8P03928 68 aa8.73□□□□□ -1.01
COL7A1-202ENST00000422991 SPINK7P58062 85 aa8.72□□□□□ -1.01
COL7A1-202ENST00000422991 HRES1P13985 223 aa8.7□□□□□ -1.02
COL7A1-202ENST00000422991 IMUPQ9GZP8 106 aa8.7□□□□□ -1.02
COL7A1-202ENST00000422991 LCE2CQ5TA81 110 aa8.69□□□□□ -1.02
COL7A1-202ENST00000422991 MPLKIPQ8TAP9 179 aa8.66□□□□□ -1.02
COL7A1-202ENST00000422991 IGKV2D-30A0A075B6S6 120 aa8.65□□□□□ -1.02
COL7A1-202ENST00000422991 IGKV2-30P06310 120 aa8.65□□□□□ -1.02
COL7A1-202ENST00000422991 C7orf65Q6ZTY9 151 aa8.65□□□□□ -1.02
COL7A1-202ENST00000422991 UQCRQO14949 82 aa8.63□□□□□ -1.03
COL7A1-202ENST00000422991 COX6B2Q6YFQ2 88 aa8.63□□□□□ -1.03
COL7A1-202ENST00000422991 TRAV22A0A0B4J277 110 aa8.62□□□□□ -1.03
COL7A1-202ENST00000422991 KRTAP9-2Q9BYQ4 174 aa8.6□□□□□ -1.03
COL7A1-202ENST00000422991 OCR1Q9BZK8 76 aa8.6□□□□□ -1.03
COL7A1-202ENST00000422991 RBM12B-AS1Q9P1G2 102 aa8.6□□□□□ -1.03
COL7A1-202ENST00000422991 FLGP20930 4061 aaPredicted RBP8.58□□□□□ -1.04
COL7A1-202ENST00000422991 SCGB1A1P11684 91 aa8.56□□□□□ -1.04
COL7A1-202ENST00000422991 FAM236DA0A1B0GTK5 79 aa8.55□□□□□ -1.04
COL7A1-202ENST00000422991 FAM236AA0A1B0GUQ0 79 aa8.55□□□□□ -1.04
COL7A1-202ENST00000422991 FAM236BA0A1B0GV22 79 aa8.55□□□□□ -1.04
COL7A1-202ENST00000422991 H0Y9P7 68 aa8.55□□□□□ -1.04
COL7A1-202ENST00000422991 FAM236CP0DP71 79 aa8.55□□□□□ -1.04
COL7A1-202ENST00000422991 MT1HP80294 61 aa8.54□□□□□ -1.04
COL7A1-202ENST00000422991 ATOX1O00244 68 aa8.53□□□□□ -1.04
COL7A1-202ENST00000422991 LOC101927531A0A1B0GV80 90 aa8.52□□□□□ -1.05
COL7A1-202ENST00000422991 CYP4F30PQ9H0H9 118 aa8.5□□□□□ -1.05
COL7A1-202ENST00000422991 C5orf47Q569G3 176 aa8.47□□□□□ -1.05
COL7A1-202ENST00000422991 MP68P56378 58 aa8.46□□□□□ -1.06
COL7A1-202ENST00000422991 C4orf26Q17RF5 130 aa8.45□□□□□ -1.06
COL7A1-202ENST00000422991 SMIM20Q8N5G0 67 aa8.45□□□□□ -1.06
COL7A1-202ENST00000422991 C1orf64Q8NEQ6 169 aa8.45□□□□□ -1.06
COL7A1-202ENST00000422991 LINC00208Q96KT6 92 aa8.44□□□□□ -1.06
COL7A1-202ENST00000422991 TRAV7A0A075B6U4 112 aa8.43□□□□□ -1.06
COL7A1-202ENST00000422991 H3BPC8 53 aa8.41□□□□□ -1.06
COL7A1-202ENST00000422991 M0R2T5 61 aa8.38□□□□□ -1.07
COL7A1-202ENST00000422991 H1FX-AS1Q4G0G2 97 aa8.38□□□□□ -1.07
COL7A1-202ENST00000422991 LCE2DQ5TA82 110 aaPredicted RBP8.37□□□□□ -1.07
COL7A1-202ENST00000422991 KRTAP3-1Q9BYR8 98 aa8.35□□□□□ -1.07
COL7A1-202ENST00000422991 KLKP1Q107X0 134 aa8.34□□□□□ -1.07
COL7A1-202ENST00000422991 KRTAP10-6P60371 365 aaPredicted RBP8.32□□□□□ -1.08
COL7A1-202ENST00000422991 LORP23490 312 aaPredicted RBP8.31□□□□□ -1.08
COL7A1-202ENST00000422991 SERP2Q8N6R1 65 aa8.31□□□□□ -1.08
COL7A1-202ENST00000422991 KRTAP9-6A0A140TA67 174 aa8.3□□□□□ -1.08
COL7A1-202ENST00000422991 SNURFQ9Y675 71 aa8.21□□□□□ -1.1
COL7A1-202ENST00000422991 C20orf197Q8N268 126 aa8.2□□□□□ -1.1
COL7A1-202ENST00000422991 S4R3F8 94 aa8.2□□□□□ -1.1
COL7A1-202ENST00000422991 A8MUN3 132 aa8.19□□□□□ -1.1
COL7A1-202ENST00000422991 COX7CP15954 63 aa8.18□□□□□ -1.1
COL7A1-202ENST00000422991 FSIP2Q5CZC0 6907 aa8.16□□□□□ -1.1
COL7A1-202ENST00000422991 LCA10Q71F78 164 aa8.15□□□□□ -1.1
COL7A1-202ENST00000422991 KRTAP9-8Q9BYQ0 159 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms