RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 PSORS1C2Q9UIG4 136 aa5.86□□□□□ -1.47
CD44-206ENST00000415148 STARD9Q9P2P6 4700 aa5.85□□□□□ -1.47
CD44-206ENST00000415148 DNAH2Q9P225 4427 aa5.85□□□□□ -1.47
CD44-206ENST00000415148 MRPL34Q9BQ48 92 aaKnown RBP5.85□□□□□ -1.47
CD44-206ENST00000415148 IGHV6-1A0A0B4J1U7 121 aa5.84□□□□□ -1.47
CD44-206ENST00000415148 LOC101927531A0A1B0GV80 90 aa5.84□□□□□ -1.48
CD44-206ENST00000415148 RTL8CO15255 209 aa5.84□□□□□ -1.48
CD44-206ENST00000415148 VPS13DQ5THJ4 4388 aa5.83□□□□□ -1.48
CD44-206ENST00000415148 KMT2AQ03164 3969 aa5.83□□□□□ -1.48
CD44-206ENST00000415148 NDUFS5O43920 106 aa5.82□□□□□ -1.48
CD44-206ENST00000415148 SPTSSBQ8NFR3 76 aa5.82□□□□□ -1.48
CD44-206ENST00000415148 SPAG11AQ6PDA7 123 aa5.81□□□□□ -1.48
CD44-206ENST00000415148 Q75L30 129 aa5.81□□□□□ -1.48
CD44-206ENST00000415148 ALMS1Q8TCU4 4167 aa5.79□□□□□ -1.48
CD44-206ENST00000415148 A6NED7 52 aa5.79□□□□□ -1.48
CD44-206ENST00000415148 FBN3Q75N90 2809 aa5.79□□□□□ -1.48
CD44-206ENST00000415148 HRES1P13985 223 aa5.79□□□□□ -1.48
CD44-206ENST00000415148 LINC01558Q9Y6Z2 57 aa5.79□□□□□ -1.48
CD44-206ENST00000415148 PRKDCP78527 4128 aaKnown RBP5.78□□□□□ -1.48
CD44-206ENST00000415148 IGLV7-43P04211 117 aa5.77□□□□□ -1.49
CD44-206ENST00000415148 SSBP3-AS1Q7Z2R9 100 aa5.77□□□□□ -1.49
CD44-206ENST00000415148 SPINK7P58062 85 aa5.77□□□□□ -1.49
CD44-206ENST00000415148 Q5W150 140 aa5.77□□□□□ -1.49
CD44-206ENST00000415148 C8orf87E5RJ46 101 aa5.76□□□□□ -1.49
CD44-206ENST00000415148 MEGF8Q7Z7M0 2845 aa5.75□□□□□ -1.49
CD44-206ENST00000415148 KRTAP13-3Q3SY46 172 aa5.75□□□□□ -1.49
CD44-206ENST00000415148 DNAH6Q9C0G6 4158 aa5.75□□□□□ -1.49
CD44-206ENST00000415148 A6NN06 94 aa5.74□□□□□ -1.49
CD44-206ENST00000415148 C1orf134Q5TEV5 83 aa5.73□□□□□ -1.49
CD44-206ENST00000415148 ATP11AUNQ6ZP68 121 aa5.73□□□□□ -1.49
CD44-206ENST00000415148 PRR26Q8N8Z3 221 aa5.73□□□□□ -1.49
CD44-206ENST00000415148 SPINK6Q6UWN8 80 aa5.73□□□□□ -1.49
CD44-206ENST00000415148 DNAH11Q96DT5 4516 aa5.72□□□□□ -1.49
CD44-206ENST00000415148 C4orf48Q5BLP8 95 aa5.72□□□□□ -1.49
CD44-206ENST00000415148 CDC42SE1Q9NRR8 79 aa5.72□□□□□ -1.49
CD44-206ENST00000415148 KTN1-AS1Q86SY8 53 aa5.71□□□□□ -1.5
CD44-206ENST00000415148 CIRBP-AS1Q8TBR5 109 aa5.71□□□□□ -1.5
CD44-206ENST00000415148 TGP01266 2768 aa5.7□□□□□ -1.5
CD44-206ENST00000415148 ACYP2P14621 99 aa5.7□□□□□ -1.5
CD44-206ENST00000415148 DNAH5Q8TE73 4624 aa5.69□□□□□ -1.5
CD44-206ENST00000415148 RBM12B-AS1Q9P1G2 102 aa5.68□□□□□ -1.5
CD44-206ENST00000415148 LINC00313P59037 77 aa5.67□□□□□ -1.5
CD44-206ENST00000415148 FAM229AH3BQW9 127 aa5.67□□□□□ -1.5
CD44-206ENST00000415148 RETNLBQ9BQ08 111 aa5.67□□□□□ -1.5
CD44-206ENST00000415148 DMAC1Q96GE9 116 aa5.65□□□□□ -1.51
CD44-206ENST00000415148 LRP1BQ9NZR2 4599 aa5.63□□□□□ -1.51
CD44-206ENST00000415148 IGKV2-30P06310 120 aa5.62□□□□□ -1.51
CD44-206ENST00000415148 LY6G6CO95867 125 aa5.61□□□□□ -1.51
CD44-206ENST00000415148 KRTAP13-2Q52LG2 175 aa5.61□□□□□ -1.51
CD44-206ENST00000415148 Q6ZSA8 131 aa5.6□□□□□ -1.51
CD44-206ENST00000415148 KRTAP16-1A8MUX0 517 aa5.59□□□□□ -1.51
CD44-206ENST00000415148 KRTAP10-2P60368 255 aa5.59□□□□□ -1.51
CD44-206ENST00000415148 C7orf65Q6ZTY9 151 aa5.59□□□□□ -1.51
CD44-206ENST00000415148 ADM2Q7Z4H4 148 aa5.58□□□□□ -1.52
CD44-206ENST00000415148 PRAC1Q96KF2 57 aa5.58□□□□□ -1.52
CD44-206ENST00000415148 PKD1P98161 4303 aa5.55□□□□□ -1.52
CD44-206ENST00000415148 KRTAP1-4P0C5Y4 121 aa5.55□□□□□ -1.52
CD44-206ENST00000415148 HYDINQ4G0P3 5121 aa5.54□□□□□ -1.52
CD44-206ENST00000415148 FAT2Q9NYQ8 4349 aa5.54□□□□□ -1.52
CD44-206ENST00000415148 VPS13BQ7Z7G8 4022 aa5.54□□□□□ -1.52
CD44-206ENST00000415148 A0A1B0GU69 56 aa5.53□□□□□ -1.52
CD44-206ENST00000415148 KRTAP10-1P60331 282 aa5.53□□□□□ -1.52
CD44-206ENST00000415148 SPINK1P00995 79 aa5.51□□□□□ -1.53
CD44-206ENST00000415148 SPATA8Q6RVD6 105 aa5.5□□□□□ -1.53
CD44-206ENST00000415148 IGKV2D-30A0A075B6S6 120 aa5.49□□□□□ -1.53
CD44-206ENST00000415148 TYMSOSQ8TAI1 123 aa5.49□□□□□ -1.53
CD44-206ENST00000415148 PLA2G1BP04054 148 aaKnown RBP5.48□□□□□ -1.53
CD44-206ENST00000415148 RPS29P62273 56 aaKnown RBP5.48□□□□□ -1.53
CD44-206ENST00000415148 UQCR11O14957 56 aa5.47□□□□□ -1.53
CD44-206ENST00000415148 MIR22HGQ0VDD5 57 aa5.44□□□□□ -1.54
CD44-206ENST00000415148 Q8N1X5 172 aa5.41□□□□□ -1.54
CD44-206ENST00000415148 LINC00304Q8N9R0 145 aa5.41□□□□□ -1.54
CD44-206ENST00000415148 PKHD1P08F94 4074 aa5.39□□□□□ -1.55
CD44-206ENST00000415148 SACSQ9NZJ4 4579 aa5.37□□□□□ -1.55
CD44-206ENST00000415148 C20orf166-AS1Q96NR2 134 aa5.35□□□□□ -1.55
CD44-206ENST00000415148 A8MUU9 505 aa5.34□□□□□ -1.55
CD44-206ENST00000415148 KMT2CQ8NEZ4 4911 aaKnown RBP5.34□□□□□ -1.56
CD44-206ENST00000415148 CSAG1Q6PB30 78 aa5.34□□□□□ -1.56
CD44-206ENST00000415148 LINC01554Q52M75 96 aa5.32□□□□□ -1.56
CD44-206ENST00000415148 FAT1Q14517 4588 aa5.31□□□□□ -1.56
CD44-206ENST00000415148 H0YAA0 97 aa5.29□□□□□ -1.56
CD44-206ENST00000415148 RYR2Q92736 4967 aa5.29□□□□□ -1.56
CD44-206ENST00000415148 KRTAP3-1Q9BYR8 98 aa5.28□□□□□ -1.56
CD44-206ENST00000415148 PKHD1L1Q86WI1 4243 aa5.28□□□□□ -1.56
CD44-206ENST00000415148 DYNC1H1Q14204 4646 aaKnown RBP5.28□□□□□ -1.56
CD44-206ENST00000415148 C9orf92A6NGG3 77 aa5.27□□□□□ -1.57
CD44-206ENST00000415148 SMR3BP02814 79 aaPredicted RBP5.24□□□□□ -1.57
CD44-206ENST00000415148 KRTAP10-4P60372 401 aaPredicted RBP5.24□□□□□ -1.57
CD44-206ENST00000415148 APOBP04114 4563 aaKnown RBP5.24□□□□□ -1.57
CD44-206ENST00000415148 RYR3Q15413 4870 aa5.24□□□□□ -1.57
CD44-206ENST00000415148 FLG2Q5D862 2391 aaPredicted RBP5.23□□□□□ -1.57
CD44-206ENST00000415148 A0A1B0GU33 70 aa5.22□□□□□ -1.57
CD44-206ENST00000415148 A0A1B0GVY2 172 aa5.22□□□□□ -1.57
CD44-206ENST00000415148 H1FX-AS1Q4G0G2 97 aa5.2□□□□□ -1.58
CD44-206ENST00000415148 COX6B2Q6YFQ2 88 aa5.2□□□□□ -1.58
CD44-206ENST00000415148 CRIPTQ9P021 101 aa5.17□□□□□ -1.58
CD44-206ENST00000415148 HSPG2P98160 4391 aa5.15□□□□□ -1.58
CD44-206ENST00000415148 FAT3Q8TDW7 4589 aa5.13□□□□□ -1.59
CD44-206ENST00000415148 LRP1Q07954 4544 aaKnown RBP5.12□□□□□ -1.59
CD44-206ENST00000415148 KRTAP25-1Q3LHN0 102 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms