RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 FXYD6P3P58550 94 aa1.91□□□□□ -2.1
HMGB1-204ENST00000399489 SSBP3-AS1Q7Z2R9 100 aa1.91□□□□□ -2.1
HMGB1-204ENST00000399489 HIVEP2P31629 2446 aa1.91□□□□□ -2.1
HMGB1-204ENST00000399489 MEGF8Q7Z7M0 2845 aa1.91□□□□□ -2.1
HMGB1-204ENST00000399489 EPPK1P58107 5090 aaKnown RBP1.91□□□□□ -2.1
HMGB1-204ENST00000399489 Q6ZRX8 168 aa1.91□□□□□ -2.1
HMGB1-204ENST00000399489 SMIM11BQ8TCY0 68 aa1.91□□□□□ -2.1
HMGB1-204ENST00000399489 ZANQ9Y493 2812 aa1.9□□□□□ -2.11
HMGB1-204ENST00000399489 CNTRLQ7Z7A1 2325 aa1.9□□□□□ -2.11
HMGB1-204ENST00000399489 H0YGX0 51 aa1.9□□□□□ -2.11
HMGB1-204ENST00000399489 TFF3Q07654 80 aa1.9□□□□□ -2.11
HMGB1-204ENST00000399489 PLAC4Q8WY50 150 aa1.9□□□□□ -2.11
HMGB1-204ENST00000399489 NOTCH1P46531 2555 aa1.9□□□□□ -2.11
HMGB1-204ENST00000399489 PKD1L1Q8TDX9 2849 aa1.9□□□□□ -2.11
HMGB1-204ENST00000399489 SONP18583 2426 aaKnown RBP1.9□□□□□ -2.11
HMGB1-204ENST00000399489 MGAM2Q2M2H8 2515 aa1.9□□□□□ -2.11
HMGB1-204ENST00000399489 NDUFA3O95167 84 aa1.89□□□□□ -2.11
HMGB1-204ENST00000399489 TRRAPQ9Y4A5 3859 aa1.89□□□□□ -2.11
HMGB1-204ENST00000399489 G3V318 75 aa1.88□□□□□ -2.11
HMGB1-204ENST00000399489 C10orf99Q6UWK7 81 aa1.88□□□□□ -2.11
HMGB1-204ENST00000399489 TGP01266 2768 aa1.88□□□□□ -2.11
HMGB1-204ENST00000399489 CPSF4LA6NMK7 179 aaKnown RBP1.88□□□□□ -2.11
HMGB1-204ENST00000399489 UNQ6190/PRO20217Q6UXQ8 127 aa1.88□□□□□ -2.11
HMGB1-204ENST00000399489 BRD3OSQ6XYD6 125 aa1.88□□□□□ -2.11
HMGB1-204ENST00000399489 CACNA1CQ13936 2221 aa1.88□□□□□ -2.11
HMGB1-204ENST00000399489 NBEAL2Q6ZNJ1 2754 aa1.87□□□□□ -2.11
HMGB1-204ENST00000399489 GVQW2A0A096LPI5 108 aaPredicted RBP1.87□□□□□ -2.11
HMGB1-204ENST00000399489 PIN1P1O15428 100 aa1.87□□□□□ -2.11
HMGB1-204ENST00000399489 MRPL33O75394 65 aaKnown RBP1.87□□□□□ -2.11
HMGB1-204ENST00000399489 DEFB106AQ8N104 65 aa1.87□□□□□ -2.11
HMGB1-204ENST00000399489 COX14Q96I36 57 aa1.87□□□□□ -2.11
HMGB1-204ENST00000399489 HRNRQ86YZ3 2850 aaPredicted RBP1.87□□□□□ -2.11
HMGB1-204ENST00000399489 TNCP24821 2201 aa1.86□□□□□ -2.11
HMGB1-204ENST00000399489 A0A096LNT2 108 aa1.86□□□□□ -2.11
HMGB1-204ENST00000399489 LY6G6CO95867 125 aa1.86□□□□□ -2.11
HMGB1-204ENST00000399489 RYR2Q92736 4967 aa1.86□□□□□ -2.11
HMGB1-204ENST00000399489 SACSQ9NZJ4 4579 aa1.86□□□□□ -2.11
HMGB1-204ENST00000399489 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.85□□□□□ -2.111e-6■■■■□ 22.6
HMGB1-204ENST00000399489 HYDINQ4G0P3 5121 aa1.85□□□□□ -2.11
HMGB1-204ENST00000399489 KRTAP10-10P60014 251 aa1.85□□□□□ -2.11
HMGB1-204ENST00000399489 TMEM167BQ9NRX6 74 aa1.85□□□□□ -2.11
HMGB1-204ENST00000399489 WNK1Q9H4A3 2382 aa1.85□□□□□ -2.11
HMGB1-204ENST00000399489 RYR1P21817 5038 aa1.83□□□□□ -2.12
HMGB1-204ENST00000399489 DEFB131BA0A096LNP1 70 aa1.83□□□□□ -2.12
HMGB1-204ENST00000399489 SPINK13Q1W4C9 94 aa1.83□□□□□ -2.12
HMGB1-204ENST00000399489 PCOTHQ58A44 107 aa1.83□□□□□ -2.12
HMGB1-204ENST00000399489 PCLOQ9Y6V0 5065 aa1.83□□□□□ -2.12
HMGB1-204ENST00000399489 CMYA5Q8N3K9 4069 aa1.83□□□□□ -2.12
HMGB1-204ENST00000399489 ABCA1O95477 2261 aa1.83□□□□□ -2.12
HMGB1-204ENST00000399489 ANGP03950 147 aaKnown RBP1.83□□□□□ -2.12
HMGB1-204ENST00000399489 TENM1Q9UKZ4 2725 aa1.82□□□□□ -2.12
HMGB1-204ENST00000399489 HERC2O95714 4834 aa1.82□□□□□ -2.12
HMGB1-204ENST00000399489 USF3Q68DE3 2245 aa1.82□□□□□ -2.12
HMGB1-204ENST00000399489 CRIP1P50238 77 aa1.81□□□□□ -2.12
HMGB1-204ENST00000399489 DEFB110Q30KQ9 67 aa1.81□□□□□ -2.12
HMGB1-204ENST00000399489 LINC00575Q6W349 94 aa1.81□□□□□ -2.12
HMGB1-204ENST00000399489 DNAH1Q9P2D7 4330 aa1.8□□□□□ -2.12
HMGB1-204ENST00000399489 DNAH9Q9NYC9 4486 aa1.8□□□□□ -2.12
HMGB1-204ENST00000399489 STATHP02808 62 aa1.8□□□□□ -2.12
HMGB1-204ENST00000399489 LINC00158P58513 81 aa1.8□□□□□ -2.12
HMGB1-204ENST00000399489 UBE2DNLQ8IWF7 75 aa1.8□□□□□ -2.12
HMGB1-204ENST00000399489 ROS1P08922 2347 aa1.79□□□□□ -2.12
HMGB1-204ENST00000399489 VWFP04275 2813 aa1.79□□□□□ -2.12
HMGB1-204ENST00000399489 DYNC2H1Q8NCM8 4307 aaKnown RBP1.79□□□□□ -2.12
HMGB1-204ENST00000399489 DEFB108AA8MXU0 73 aa1.79□□□□□ -2.12
HMGB1-204ENST00000399489 RPL37P61927 97 aaKnown RBP1.79□□□□□ -2.12
HMGB1-204ENST00000399489 KRTAP12-1P59990 96 aa1.78□□□□□ -2.12
HMGB1-204ENST00000399489 CRIPTQ9P021 101 aa1.77□□□□□ -2.13
HMGB1-204ENST00000399489 CDKN2A-AS1Q9UH64 79 aa1.77□□□□□ -2.13
HMGB1-204ENST00000399489 Q8IZM0 81 aa1.77□□□□□ -2.13
HMGB1-204ENST00000399489 CADP27708 2225 aa1.76□□□□□ -2.13
HMGB1-204ENST00000399489 KRTAP6-3Q3LI67 103 aa1.76□□□□□ -2.13
HMGB1-204ENST00000399489 LINC00308Q8TCZ7 52 aa1.76□□□□□ -2.13
HMGB1-204ENST00000399489 TENM3Q9P273 2699 aa1.76□□□□□ -2.13
HMGB1-204ENST00000399489 H0YGG7 62 aa1.75□□□□□ -2.13
HMGB1-204ENST00000399489 SMIM2Q9BVW6 85 aa1.75□□□□□ -2.13
HMGB1-204ENST00000399489 KIAA1109Q2LD37 5005 aa1.75□□□□□ -2.13
HMGB1-204ENST00000399489 ABCA13Q86UQ4 5058 aa1.74□□□□□ -2.13
HMGB1-204ENST00000399489 DNAH3Q8TD57 4116 aa1.74□□□□□ -2.13
HMGB1-204ENST00000399489 CSMD3Q7Z407 3707 aa1.74□□□□□ -2.13
HMGB1-204ENST00000399489 UBR4Q5T4S7 5183 aa1.73□□□□□ -2.13
HMGB1-204ENST00000399489 CCL22O00626 93 aa1.73□□□□□ -2.13
HMGB1-204ENST00000399489 STARD9Q9P2P6 4700 aa1.73□□□□□ -2.13
HMGB1-204ENST00000399489 HUWE1Q7Z6Z7 4374 aaKnown RBP1.73□□□□□ -2.13
HMGB1-204ENST00000399489 FRAS1Q86XX4 4008 aa1.73□□□□□ -2.13
HMGB1-204ENST00000399489 HERC1Q15751 4861 aa1.72□□□□□ -2.13
HMGB1-204ENST00000399489 PRB3Q04118 309 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-204ENST00000399489 USMG5Q96IX5 58 aa1.72□□□□□ -2.13
HMGB1-204ENST00000399489 PLECQ15149 4684 aaKnown RBP1.72□□□□□ -2.13
HMGB1-204ENST00000399489 TENM2Q9NT68 2774 aa1.72□□□□□ -2.13
HMGB1-204ENST00000399489 NDUFA1O15239 70 aa1.71□□□□□ -2.13
HMGB1-204ENST00000399489 K7EQZ3 153 aa1.71□□□□□ -2.14
HMGB1-204ENST00000399489 COX6B2Q6YFQ2 88 aa1.71□□□□□ -2.14
HMGB1-204ENST00000399489 LYSTQ99698 3801 aa1.71□□□□□ -2.14
HMGB1-204ENST00000399489 MRPL34Q9BQ48 92 aaKnown RBP1.71□□□□□ -2.14
HMGB1-204ENST00000399489 CNFNQ9BYD5 112 aa1.71□□□□□ -2.14
HMGB1-204ENST00000399489 TP53AIP1Q9HCN2 124 aa1.71□□□□□ -2.14
HMGB1-204ENST00000399489 PLCE1Q9P212 2302 aa1.7□□□□□ -2.14
HMGB1-204ENST00000399489 LYNX1G3V0Z9 82 aa1.7□□□□□ -2.14
HMGB1-204ENST00000399489 PIGYQ3MUY2 71 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 141.1 ms