RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 NBDYA0A0U1RRE5 68 aa5.6□□□□□ -1.51
COL28A1-201ENST00000399429 ASB16-AS1Q495Z4 193 aa5.58□□□□□ -1.52
COL28A1-201ENST00000399429 DMAC1Q96GE9 116 aa5.58□□□□□ -1.52
COL28A1-201ENST00000399429 KRTAP11-1Q8IUC1 163 aa5.57□□□□□ -1.52
COL28A1-201ENST00000399429 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.56□□□□□ -1.52
COL28A1-201ENST00000399429 A0A1B0GU33 70 aa5.55□□□□□ -1.52
COL28A1-201ENST00000399429 PDZD2O15018 2839 aa5.55□□□□□ -1.52
COL28A1-201ENST00000399429 ZFHX3Q15911 3703 aa5.54□□□□□ -1.52
COL28A1-201ENST00000399429 A0A0D9SG42 100 aa5.53□□□□□ -1.52
COL28A1-201ENST00000399429 TYMSOSQ8TAI1 123 aa5.53□□□□□ -1.52
COL28A1-201ENST00000399429 KRTAP1-5Q9BYS1 174 aa5.53□□□□□ -1.52
COL28A1-201ENST00000399429 IGLV7-43P04211 117 aa5.52□□□□□ -1.53
COL28A1-201ENST00000399429 APLNQ9ULZ1 77 aa5.52□□□□□ -1.53
COL28A1-201ENST00000399429 WWC2-AS2Q96NR7 200 aa5.51□□□□□ -1.53
COL28A1-201ENST00000399429 VWFP04275 2813 aa5.51□□□□□ -1.53
COL28A1-201ENST00000399429 BSNQ9UPA5 3926 aa5.5□□□□□ -1.53
COL28A1-201ENST00000399429 PLAC8Q9NZF1 115 aa5.5□□□□□ -1.53
COL28A1-201ENST00000399429 PANO1I0J062 215 aa5.49□□□□□ -1.53
COL28A1-201ENST00000399429 PKD1L1Q8TDX9 2849 aa5.49□□□□□ -1.53
COL28A1-201ENST00000399429 TENM3Q9P273 2699 aa5.48□□□□□ -1.53
COL28A1-201ENST00000399429 KRTAP25-1Q3LHN0 102 aa5.48□□□□□ -1.53
COL28A1-201ENST00000399429 A0A087WTM6 91 aa5.47□□□□□ -1.53
COL28A1-201ENST00000399429 ROMO1P60602 79 aa5.47□□□□□ -1.53
COL28A1-201ENST00000399429 SRRM2Q9UQ35 2752 aaKnown RBP5.47□□□□□ -1.53
COL28A1-201ENST00000399429 C9orf92A6NGG3 77 aa5.45□□□□□ -1.54
COL28A1-201ENST00000399429 LINC00483Q53H64 154 aa5.4□□□□□ -1.54
COL28A1-201ENST00000399429 VPS13CQ709C8 3753 aa5.4□□□□□ -1.54
COL28A1-201ENST00000399429 TENM1Q9UKZ4 2725 aa5.4□□□□□ -1.54
COL28A1-201ENST00000399429 KMT2BQ9UMN6 2715 aaPredicted RBP5.39□□□□□ -1.55
COL28A1-201ENST00000399429 A8MUU9 505 aa5.37□□□□□ -1.55
COL28A1-201ENST00000399429 TGP01266 2768 aa5.36□□□□□ -1.55
COL28A1-201ENST00000399429 SMR3BP02814 79 aaPredicted RBP5.36□□□□□ -1.55
COL28A1-201ENST00000399429 FBN1P35555 2871 aaKnown RBP5.36□□□□□ -1.55
COL28A1-201ENST00000399429 NDUFAF8A1L188 74 aa5.36□□□□□ -1.55
COL28A1-201ENST00000399429 H1FX-AS1Q4G0G2 97 aa5.36□□□□□ -1.55
COL28A1-201ENST00000399429 LINC00304Q8N9R0 145 aa5.36□□□□□ -1.55
COL28A1-201ENST00000399429 KRTAP13-1Q8IUC0 172 aa5.34□□□□□ -1.55
COL28A1-201ENST00000399429 TENM4Q6N022 2769 aa5.32□□□□□ -1.56
COL28A1-201ENST00000399429 KRTAP16-1A8MUX0 517 aa5.31□□□□□ -1.56
COL28A1-201ENST00000399429 RPL37P61927 97 aaKnown RBP5.31□□□□□ -1.56
COL28A1-201ENST00000399429 OTOGQ6ZRI0 2925 aa5.3□□□□□ -1.56
COL28A1-201ENST00000399429 Q6ZSA8 131 aa5.29□□□□□ -1.56
COL28A1-201ENST00000399429 TENM2Q9NT68 2774 aa5.26□□□□□ -1.57
COL28A1-201ENST00000399429 H0YAA0 97 aa5.26□□□□□ -1.57
COL28A1-201ENST00000399429 COL7A1Q02388 2944 aa5.24□□□□□ -1.57
COL28A1-201ENST00000399429 A0A0A0MQY5 61 aa5.22□□□□□ -1.57
COL28A1-201ENST00000399429 COX6B2Q6YFQ2 88 aa5.22□□□□□ -1.57
COL28A1-201ENST00000399429 LUZP6Q538Z0 58 aa5.2□□□□□ -1.58
COL28A1-201ENST00000399429 KRTAP13-3Q3SY46 172 aa5.2□□□□□ -1.58
COL28A1-201ENST00000399429 J3QL48 77 aa5.19□□□□□ -1.58
COL28A1-201ENST00000399429 NBPF19A0A087WUL8 3843 aa5.19□□□□□ -1.58
COL28A1-201ENST00000399429 C10orf95Q9H7T3 257 aa5.18□□□□□ -1.58
COL28A1-201ENST00000399429 C20orf166-AS1Q96NR2 134 aa5.18□□□□□ -1.58
COL28A1-201ENST00000399429 Q6ZRN7 208 aaPredicted RBP5.17□□□□□ -1.58
COL28A1-201ENST00000399429 TRRAPQ9Y4A5 3859 aa5.16□□□□□ -1.58
COL28A1-201ENST00000399429 KRTAP13-2Q52LG2 175 aa5.16□□□□□ -1.58
COL28A1-201ENST00000399429 CSMD3Q7Z407 3707 aa5.12□□□□□ -1.59
COL28A1-201ENST00000399429 KRTAP10-2P60368 255 aa5.12□□□□□ -1.59
COL28A1-201ENST00000399429 S4R3F8 94 aa5.09□□□□□ -1.59
COL28A1-201ENST00000399429 P0C880 135 aa5.08□□□□□ -1.6
COL28A1-201ENST00000399429 FBN3Q75N90 2809 aa5.08□□□□□ -1.6
COL28A1-201ENST00000399429 KRTAP10-1P60331 282 aa5.07□□□□□ -1.6
COL28A1-201ENST00000399429 CAMK2N1Q7Z7J9 78 aa5.03□□□□□ -1.6
COL28A1-201ENST00000399429 AKAP9Q99996 3911 aa5.02□□□□□ -1.61
COL28A1-201ENST00000399429 ZNF469Q96JG9 3925 aaPredicted RBP5□□□□□ -1.61
COL28A1-201ENST00000399429 MEGF8Q7Z7M0 2845 aa4.98□□□□□ -1.61
COL28A1-201ENST00000399429 TPRXLQ17RH7 258 aa4.97□□□□□ -1.61
COL28A1-201ENST00000399429 R4GN34 69 aa4.96□□□□□ -1.61
COL28A1-201ENST00000399429 M0QZ58 72 aa4.94□□□□□ -1.62
COL28A1-201ENST00000399429 KRTAP1-4P0C5Y4 121 aa4.92□□□□□ -1.62
COL28A1-201ENST00000399429 ANK3Q12955 4377 aaKnown RBP4.92□□□□□ -1.62
COL28A1-201ENST00000399429 M0R2T5 61 aa4.89□□□□□ -1.63
COL28A1-201ENST00000399429 PLAC4Q8WY50 150 aa4.87□□□□□ -1.63
COL28A1-201ENST00000399429 KRTAP3-1Q9BYR8 98 aa4.86□□□□□ -1.63
COL28A1-201ENST00000399429 RPS29P62273 56 aaKnown RBP4.86□□□□□ -1.63
COL28A1-201ENST00000399429 Q5VSD8 79 aa4.85□□□□□ -1.63
COL28A1-201ENST00000399429 KRTAP12-2P59991 146 aa4.81□□□□□ -1.64
COL28A1-201ENST00000399429 SEC61BP60468 96 aaKnown RBP4.8□□□□□ -1.64
COL28A1-201ENST00000399429 KRTAP13-4Q3LI77 160 aa4.8□□□□□ -1.64
COL28A1-201ENST00000399429 KRTAP15-1Q3LI76 137 aa4.79□□□□□ -1.64
COL28A1-201ENST00000399429 KRTAP10-8P60410 259 aa4.79□□□□□ -1.64
COL28A1-201ENST00000399429 DNAH10Q8IVF4 4471 aa4.74□□□□□ -1.65
COL28A1-201ENST00000399429 KRTAP10-6P60371 365 aaPredicted RBP4.73□□□□□ -1.65
COL28A1-201ENST00000399429 KRTAP12-1P59990 96 aa4.71□□□□□ -1.66
COL28A1-201ENST00000399429 XP32Q5T750 250 aa4.63□□□□□ -1.67
COL28A1-201ENST00000399429 ALMS1Q8TCU4 4167 aa4.62□□□□□ -1.67
COL28A1-201ENST00000399429 HUWE1Q7Z6Z7 4374 aaKnown RBP4.61□□□□□ -1.67
COL28A1-201ENST00000399429 KRTAP3-2Q9BYR7 98 aa4.6□□□□□ -1.67
COL28A1-201ENST00000399429 PP632Q6XCG6 107 aa4.59□□□□□ -1.67
COL28A1-201ENST00000399429 KRTAP3-3Q9BYR6 98 aa4.57□□□□□ -1.68
COL28A1-201ENST00000399429 KRTAP21-3Q3LHN1 58 aa4.57□□□□□ -1.68
COL28A1-201ENST00000399429 ANK2Q01484 3957 aa4.56□□□□□ -1.68
COL28A1-201ENST00000399429 TNP1P09430 55 aa4.55□□□□□ -1.68
COL28A1-201ENST00000399429 DNAH8Q96JB1 4490 aa4.51□□□□□ -1.69
COL28A1-201ENST00000399429 CMYA5Q8N3K9 4069 aa4.5□□□□□ -1.69
COL28A1-201ENST00000399429 LYSTQ99698 3801 aa4.48□□□□□ -1.69
COL28A1-201ENST00000399429 DNAH1Q9P2D7 4330 aa4.47□□□□□ -1.69
COL28A1-201ENST00000399429 PLECQ15149 4684 aaKnown RBP4.47□□□□□ -1.69
COL28A1-201ENST00000399429 DNAH9Q9NYC9 4486 aa4.46□□□□□ -1.7
COL28A1-201ENST00000399429 FRAS1Q86XX4 4008 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms