RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 UBL5Q9BZL1 73 aa8.28□□□□□ -1.08
SKA1-202ENST00000398452 LRP1Q07954 4544 aaKnown RBP8.28□□□□□ -1.08
SKA1-202ENST00000398452 FAM240AA0A1B0GVK7 77 aa8.27□□□□□ -1.09
SKA1-202ENST00000398452 PKHD1L1Q86WI1 4243 aa8.27□□□□□ -1.09
SKA1-202ENST00000398452 KRTAP10-8P60410 259 aa8.25□□□□□ -1.09
SKA1-202ENST00000398452 NREPQ16612 68 aa8.25□□□□□ -1.09
SKA1-202ENST00000398452 RPS29P62273 56 aaKnown RBP8.24□□□□□ -1.09
SKA1-202ENST00000398452 LINC00846Q9NV44 126 aa8.21□□□□□ -1.1
SKA1-202ENST00000398452 Q5XG85 94 aa8.19□□□□□ -1.1
SKA1-202ENST00000398452 FAT3Q8TDW7 4589 aa8.19□□□□□ -1.1
SKA1-202ENST00000398452 Q6ZVQ6 151 aa8.18□□□□□ -1.1
SKA1-202ENST00000398452 MT1HL1P0DM35 61 aa8.16□□□□□ -1.1
SKA1-202ENST00000398452 ASB16-AS1Q495Z4 193 aa8.16□□□□□ -1.1
SKA1-202ENST00000398452 J3KT08 172 aa8.15□□□□□ -1.1
SKA1-202ENST00000398452 BPY2O14599 106 aa8.15□□□□□ -1.1
SKA1-202ENST00000398452 SIGMAR1Q99720 223 aa8.15□□□□□ -1.1
SKA1-202ENST00000398452 IGKV4-1P06312 121 aa8.13□□□□□ -1.11
SKA1-202ENST00000398452 LINC00643Q86TS7 51 aa8.13□□□□□ -1.11
SKA1-202ENST00000398452 ATP5EP2Q5VTU8 51 aa8.12□□□□□ -1.11
SKA1-202ENST00000398452 NDUFB1O75438 58 aa8.11□□□□□ -1.11
SKA1-202ENST00000398452 LINC00472Q9H8W2 130 aa8.11□□□□□ -1.11
SKA1-202ENST00000398452 DEFB116Q30KQ4 102 aa8.1□□□□□ -1.11
SKA1-202ENST00000398452 HMCN2Q8NDA2 5059 aa8.1□□□□□ -1.11
SKA1-202ENST00000398452 C1orf195Q5TG92 126 aa8.09□□□□□ -1.11
SKA1-202ENST00000398452 CXCL6P80162 114 aa8.08□□□□□ -1.12
SKA1-202ENST00000398452 CDIP1Q9H305 208 aa8.07□□□□□ -1.12
SKA1-202ENST00000398452 IGKV3D-7A0A0C4DH55 119 aa8.06□□□□□ -1.12
SKA1-202ENST00000398452 Q96NJ1 140 aa8.06□□□□□ -1.12
SKA1-202ENST00000398452 RETNLBQ9BQ08 111 aa8.05□□□□□ -1.12
SKA1-202ENST00000398452 UBR4Q5T4S7 5183 aa8.04□□□□□ -1.12
SKA1-202ENST00000398452 A8MWP4 228 aa8.04□□□□□ -1.12
SKA1-202ENST00000398452 SCGB1A1P11684 91 aa8.04□□□□□ -1.12
SKA1-202ENST00000398452 FP248Q71RG6 208 aaPredicted RBP8.04□□□□□ -1.12
SKA1-202ENST00000398452 TNXBP22105 4242 aa8.03□□□□□ -1.12
SKA1-202ENST00000398452 HIST1H4AP62805 103 aaKnown RBP8.03□□□□□ -1.12
SKA1-202ENST00000398452 PRR4Q16378 134 aa8.01□□□□□ -1.13
SKA1-202ENST00000398452 IGHV6-1A0A0B4J1U7 121 aa8□□□□□ -1.13
SKA1-202ENST00000398452 DSCR10P59022 87 aa8□□□□□ -1.13
SKA1-202ENST00000398452 A0A1B0GVX0 72 aa7.99□□□□□ -1.13
SKA1-202ENST00000398452 PRR15Q8IV56 129 aa7.99□□□□□ -1.13
SKA1-202ENST00000398452 IGLV7-46A0A075B6I9 117 aa7.98□□□□□ -1.13
SKA1-202ENST00000398452 C8orf87E5RJ46 101 aa7.98□□□□□ -1.13
SKA1-202ENST00000398452 K7EQZ3 153 aa7.98□□□□□ -1.13
SKA1-202ENST00000398452 Q8N9L7 120 aa7.97□□□□□ -1.13
SKA1-202ENST00000398452 MT-ATP8P03928 68 aa7.96□□□□□ -1.14
SKA1-202ENST00000398452 IMUPQ9GZP8 106 aa7.96□□□□□ -1.14
SKA1-202ENST00000398452 LINC00313P59037 77 aa7.95□□□□□ -1.14
SKA1-202ENST00000398452 C8orf17Q9NRJ1 99 aa7.92□□□□□ -1.14
SKA1-202ENST00000398452 HCG22E2RYF7 251 aa7.91□□□□□ -1.14
SKA1-202ENST00000398452 LRP2P98164 4655 aa7.9□□□□□ -1.14
SKA1-202ENST00000398452 hDV103S1A0JD37 113 aa7.89□□□□□ -1.15
SKA1-202ENST00000398452 C9orf92A6NGG3 77 aa7.89□□□□□ -1.15
SKA1-202ENST00000398452 CASC2Q6XLA1 102 aa7.89□□□□□ -1.15
SKA1-202ENST00000398452 WFDC13Q8IUB5 93 aa7.89□□□□□ -1.15
SKA1-202ENST00000398452 C5orf47Q569G3 176 aa7.88□□□□□ -1.15
SKA1-202ENST00000398452 A0A087WVE0 104 aa7.87□□□□□ -1.15
SKA1-202ENST00000398452 MMP24-AS1A0A0U1RRL7 71 aa7.86□□□□□ -1.15
SKA1-202ENST00000398452 TMEM254Q8TBM7 123 aa7.86□□□□□ -1.15
SKA1-202ENST00000398452 NDUFS5O43920 106 aa7.84□□□□□ -1.15
SKA1-202ENST00000398452 TPRXLQ17RH7 258 aa7.84□□□□□ -1.15
SKA1-202ENST00000398452 MRPL34Q9BQ48 92 aaKnown RBP7.84□□□□□ -1.15
SKA1-202ENST00000398452 KRTAP13-3Q3SY46 172 aa7.82□□□□□ -1.16
SKA1-202ENST00000398452 NOTCH2NLQ7Z3S9 236 aa7.82□□□□□ -1.16
SKA1-202ENST00000398452 FAM236AA0A1B0GUQ0 79 aa7.8□□□□□ -1.16
SKA1-202ENST00000398452 FAM236BA0A1B0GV22 79 aa7.8□□□□□ -1.16
SKA1-202ENST00000398452 RNF213Q63HN8 5207 aa7.79□□□□□ -1.16
SKA1-202ENST00000398452 TP53AIP1Q9HCN2 124 aa7.76□□□□□ -1.17
SKA1-202ENST00000398452 KRTAP16-1A8MUX0 517 aa7.75□□□□□ -1.17
SKA1-202ENST00000398452 ATOX1O00244 68 aa7.74□□□□□ -1.17
SKA1-202ENST00000398452 SMIM20Q8N5G0 67 aa7.74□□□□□ -1.17
SKA1-202ENST00000398452 Q8N9P0 234 aaPredicted RBP7.74□□□□□ -1.17
SKA1-202ENST00000398452 C20orf166-AS1Q96NR2 134 aa7.73□□□□□ -1.17
SKA1-202ENST00000398452 LPAP08519 4548 aa7.72□□□□□ -1.17
SKA1-202ENST00000398452 A8MUU9 505 aa7.72□□□□□ -1.17
SKA1-202ENST00000398452 KRTAP5-3Q6L8H2 238 aa7.72□□□□□ -1.17
SKA1-202ENST00000398452 ATP11AUNQ6ZP68 121 aa7.72□□□□□ -1.17
SKA1-202ENST00000398452 Q75L30 129 aa7.72□□□□□ -1.17
SKA1-202ENST00000398452 UQCRQO14949 82 aa7.69□□□□□ -1.18
SKA1-202ENST00000398452 RPL37P61927 97 aaKnown RBP7.69□□□□□ -1.18
SKA1-202ENST00000398452 SEC61BP60468 96 aaKnown RBP7.66□□□□□ -1.18
SKA1-202ENST00000398452 KRTAP3-1Q9BYR8 98 aa7.66□□□□□ -1.18
SKA1-202ENST00000398452 TRAV7A0A075B6U4 112 aa7.65□□□□□ -1.18
SKA1-202ENST00000398452 ZCCHC13Q8WW36 166 aaKnown RBP7.65□□□□□ -1.18
SKA1-202ENST00000398452 MP68P56378 58 aa7.64□□□□□ -1.19
SKA1-202ENST00000398452 OCR1Q9BZK8 76 aa7.64□□□□□ -1.19
SKA1-202ENST00000398452 TRAV22A0A0B4J277 110 aa7.62□□□□□ -1.19
SKA1-202ENST00000398452 ANAPC13Q9BS18 74 aa7.62□□□□□ -1.19
SKA1-202ENST00000398452 SEC61GP60059 68 aa7.61□□□□□ -1.19
SKA1-202ENST00000398452 SERP2Q8N6R1 65 aa7.61□□□□□ -1.19
SKA1-202ENST00000398452 H0Y9P7 68 aa7.6□□□□□ -1.19
SKA1-202ENST00000398452 PCOTHQ58A44 107 aa7.58□□□□□ -1.2
SKA1-202ENST00000398452 H3BPC8 53 aa7.55□□□□□ -1.2
SKA1-202ENST00000398452 Q5W150 140 aa7.55□□□□□ -1.2
SKA1-202ENST00000398452 LOC101927531A0A1B0GV80 90 aa7.54□□□□□ -1.2
SKA1-202ENST00000398452 IGKV2D-30A0A075B6S6 120 aa7.53□□□□□ -1.2
SKA1-202ENST00000398452 IGKV2-30P06310 120 aa7.53□□□□□ -1.2
SKA1-202ENST00000398452 COX7CP15954 63 aa7.53□□□□□ -1.2
SKA1-202ENST00000398452 LINC00208Q96KT6 92 aa7.53□□□□□ -1.2
SKA1-202ENST00000398452 C7orf65Q6ZTY9 151 aa7.52□□□□□ -1.21
SKA1-202ENST00000398452 C1orf64Q8NEQ6 169 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms