RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.63□□□□□ -1.03
CUX2-202ENST00000397643 M0R2T5 61 aa8.63□□□□□ -1.03
CUX2-202ENST00000397643 C21orf62-AS1Q17RA5 79 aa8.63□□□□□ -1.03
CUX2-202ENST00000397643 Q5XG85 94 aa8.63□□□□□ -1.03
CUX2-202ENST00000397643 VPS25Q9BRG1 176 aa8.63□□□□□ -1.03
CUX2-202ENST00000397643 Q6ZQT0 140 aa8.61□□□□□ -1.03
CUX2-202ENST00000397643 SS18L2Q9UHA2 77 aa8.61□□□□□ -1.03
CUX2-202ENST00000397643 A0A087WSZ3 146 aa8.59□□□□□ -1.03
CUX2-202ENST00000397643 A0A1B0GW54 56 aa8.57□□□□□ -1.04
CUX2-202ENST00000397643 ETDBQ3ZM63 59 aa8.56□□□□□ -1.04
CUX2-202ENST00000397643 COX6B2Q6YFQ2 88 aa8.54□□□□□ -1.04
CUX2-202ENST00000397643 SSPOA2VEC9 5147 aa8.54□□□□□ -1.04
CUX2-202ENST00000397643 RPL37P61927 97 aaKnown RBP8.53□□□□□ -1.04
CUX2-202ENST00000397643 C1orf195Q5TG92 126 aa8.53□□□□□ -1.04
CUX2-202ENST00000397643 USH2AO75445 5202 aa8.52□□□□□ -1.05
CUX2-202ENST00000397643 NREPQ16612 68 aa8.45□□□□□ -1.06
CUX2-202ENST00000397643 Q96NJ1 140 aa8.44□□□□□ -1.06
CUX2-202ENST00000397643 LINC00472Q9H8W2 130 aa8.44□□□□□ -1.06
CUX2-202ENST00000397643 IGKV4-1P06312 121 aa8.42□□□□□ -1.06
CUX2-202ENST00000397643 J3KT08 172 aa8.41□□□□□ -1.06
CUX2-202ENST00000397643 DEFB116Q30KQ4 102 aa8.41□□□□□ -1.06
CUX2-202ENST00000397643 SIGMAR1Q99720 223 aa8.41□□□□□ -1.06
CUX2-202ENST00000397643 FCGBPQ9Y6R7 5405 aaPredicted RBP8.4□□□□□ -1.06
CUX2-202ENST00000397643 KRTAP9-8Q9BYQ0 159 aa8.39□□□□□ -1.07
CUX2-202ENST00000397643 UBL5Q9BZL1 73 aa8.38□□□□□ -1.07
CUX2-202ENST00000397643 LINC00846Q9NV44 126 aa8.38□□□□□ -1.07
CUX2-202ENST00000397643 ACYP1P07311 99 aa8.37□□□□□ -1.07
CUX2-202ENST00000397643 Q6ZVQ6 151 aa8.37□□□□□ -1.07
CUX2-202ENST00000397643 FAM240AA0A1B0GVK7 77 aa8.34□□□□□ -1.07
CUX2-202ENST00000397643 J3QR89 54 aa8.33□□□□□ -1.08
CUX2-202ENST00000397643 BPY2O14599 106 aa8.33□□□□□ -1.08
CUX2-202ENST00000397643 NDUFB1O75438 58 aa8.33□□□□□ -1.08
CUX2-202ENST00000397643 A8MWP4 228 aa8.31□□□□□ -1.08
CUX2-202ENST00000397643 SYNE2Q8WXH0 6885 aaKnown RBP8.3□□□□□ -1.08
CUX2-202ENST00000397643 A0A1B0GVX0 72 aa8.3□□□□□ -1.08
CUX2-202ENST00000397643 IGHV6-1A0A0B4J1U7 121 aa8.29□□□□□ -1.08
CUX2-202ENST00000397643 MACF1Q9UPN3 7388 aaKnown RBP8.28□□□□□ -1.08
CUX2-202ENST00000397643 C8orf87E5RJ46 101 aa8.27□□□□□ -1.09
CUX2-202ENST00000397643 DSCR10P59022 87 aa8.27□□□□□ -1.09
CUX2-202ENST00000397643 LINC00313P59037 77 aa8.27□□□□□ -1.09
CUX2-202ENST00000397643 IGKV3D-7A0A0C4DH55 119 aa8.26□□□□□ -1.09
CUX2-202ENST00000397643 Q75L30 129 aa8.26□□□□□ -1.09
CUX2-202ENST00000397643 KRTAP19-1Q8IUB9 90 aa8.25□□□□□ -1.09
CUX2-202ENST00000397643 PRR15Q8IV56 129 aa8.25□□□□□ -1.09
CUX2-202ENST00000397643 ATP11AUNQ6ZP68 121 aa8.23□□□□□ -1.09
CUX2-202ENST00000397643 K7EQZ3 153 aa8.22□□□□□ -1.09
CUX2-202ENST00000397643 LCE2BO14633 110 aa8.22□□□□□ -1.09
CUX2-202ENST00000397643 CXCL6P80162 114 aa8.22□□□□□ -1.09
CUX2-202ENST00000397643 K7ERU9 68 aa8.21□□□□□ -1.1
CUX2-202ENST00000397643 MT2AP02795 61 aa8.21□□□□□ -1.1
CUX2-202ENST00000397643 NOTCH2NLQ7Z3S9 236 aa8.21□□□□□ -1.1
CUX2-202ENST00000397643 C8orf17Q9NRJ1 99 aa8.21□□□□□ -1.1
CUX2-202ENST00000397643 ATP5EP2Q5VTU8 51 aa8.19□□□□□ -1.1
CUX2-202ENST00000397643 LINC00643Q86TS7 51 aa8.19□□□□□ -1.1
CUX2-202ENST00000397643 Q8N9L7 120 aa8.19□□□□□ -1.1
CUX2-202ENST00000397643 KRTAP16-1A8MUX0 517 aa8.16□□□□□ -1.1
CUX2-202ENST00000397643 MT1FP04733 61 aa8.16□□□□□ -1.1
CUX2-202ENST00000397643 MMP24-AS1A0A0U1RRL7 71 aa8.15□□□□□ -1.1
CUX2-202ENST00000397643 C20orf166-AS1Q96NR2 134 aa8.15□□□□□ -1.1
CUX2-202ENST00000397643 A8MUU9 505 aa8.14□□□□□ -1.11
CUX2-202ENST00000397643 KRTAP9-3Q9BYQ3 159 aa8.14□□□□□ -1.11
CUX2-202ENST00000397643 hDV103S1A0JD37 113 aa8.12□□□□□ -1.11
CUX2-202ENST00000397643 TMEM254Q8TBM7 123 aa8.12□□□□□ -1.11
CUX2-202ENST00000397643 CASC2Q6XLA1 102 aa8.1□□□□□ -1.11
CUX2-202ENST00000397643 MRPL34Q9BQ48 92 aaKnown RBP8.1□□□□□ -1.11
CUX2-202ENST00000397643 HCG22E2RYF7 251 aa8.09□□□□□ -1.11
CUX2-202ENST00000397643 WFDC13Q8IUB5 93 aa8.09□□□□□ -1.11
CUX2-202ENST00000397643 HIST1H4AP62805 103 aaKnown RBP8.08□□□□□ -1.12
CUX2-202ENST00000397643 Q8N9P0 234 aaPredicted RBP8.08□□□□□ -1.12
CUX2-202ENST00000397643 NDUFS5O43920 106 aa8.04□□□□□ -1.12
CUX2-202ENST00000397643 KRTAP10-10P60014 251 aa8.03□□□□□ -1.12
CUX2-202ENST00000397643 PCP4P48539 62 aa8□□□□□ -1.13
CUX2-202ENST00000397643 KRTAP19-6Q3LI70 58 aa7.99□□□□□ -1.13
CUX2-202ENST00000397643 ZCCHC13Q8WW36 166 aaKnown RBP7.99□□□□□ -1.13
CUX2-202ENST00000397643 A0A087WVE0 104 aa7.98□□□□□ -1.13
CUX2-202ENST00000397643 MPLKIPQ8TAP9 179 aa7.98□□□□□ -1.13
CUX2-202ENST00000397643 IMUPQ9GZP8 106 aa7.96□□□□□ -1.14
CUX2-202ENST00000397643 FAM236DA0A1B0GTK5 79 aa7.95□□□□□ -1.14
CUX2-202ENST00000397643 MT-ATP8P03928 68 aa7.95□□□□□ -1.14
CUX2-202ENST00000397643 FAM236CP0DP71 79 aa7.95□□□□□ -1.14
CUX2-202ENST00000397643 HRES1P13985 223 aa7.94□□□□□ -1.14
CUX2-202ENST00000397643 TP53AIP1Q9HCN2 124 aa7.94□□□□□ -1.14
CUX2-202ENST00000397643 KRTAP6-3Q3LI67 103 aa7.89□□□□□ -1.15
CUX2-202ENST00000397643 Q5W150 140 aa7.87□□□□□ -1.15
CUX2-202ENST00000397643 RBM12B-AS1Q9P1G2 102 aa7.87□□□□□ -1.15
CUX2-202ENST00000397643 NEBP20929 6669 aa7.85□□□□□ -1.15
CUX2-202ENST00000397643 SCGB1A1P11684 91 aa7.85□□□□□ -1.15
CUX2-202ENST00000397643 UQCRQO14949 82 aa7.84□□□□□ -1.15
CUX2-202ENST00000397643 SPINK7P58062 85 aa7.83□□□□□ -1.16
CUX2-202ENST00000397643 IGKV2D-30A0A075B6S6 120 aa7.79□□□□□ -1.16
CUX2-202ENST00000397643 TRAV22A0A0B4J277 110 aa7.79□□□□□ -1.16
CUX2-202ENST00000397643 FAM236AA0A1B0GUQ0 79 aa7.79□□□□□ -1.16
CUX2-202ENST00000397643 FAM236BA0A1B0GV22 79 aa7.79□□□□□ -1.16
CUX2-202ENST00000397643 IGKV2-30P06310 120 aa7.79□□□□□ -1.16
CUX2-202ENST00000397643 C7orf65Q6ZTY9 151 aa7.78□□□□□ -1.16
CUX2-202ENST00000397643 OCR1Q9BZK8 76 aa7.78□□□□□ -1.16
CUX2-202ENST00000397643 ATOX1O00244 68 aa7.75□□□□□ -1.17
CUX2-202ENST00000397643 H0Y9P7 68 aa7.74□□□□□ -1.17
CUX2-202ENST00000397643 SMIM20Q8N5G0 67 aa7.74□□□□□ -1.17
CUX2-202ENST00000397643 MP68P56378 58 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms