RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 KRTAP10-4P60372 401 aaPredicted RBP14.56□□□□□ -0.08
SHOX2-201ENST00000389589 C4orf48Q5BLP8 95 aa14.56□□□□□ -0.08
SHOX2-201ENST00000389589 SPINK1P00995 79 aa14.51□□□□□ -0.09
SHOX2-201ENST00000389589 C1orf195Q5TG92 126 aa14.5□□□□□ -0.09
SHOX2-201ENST00000389589 MP68P56378 58 aa14.5□□□□□ -0.09
SHOX2-201ENST00000389589 PRR26Q8N8Z3 221 aa14.49□□□□□ -0.09
SHOX2-201ENST00000389589 TP53AIP1Q9HCN2 124 aa14.48□□□□□ -0.09
SHOX2-201ENST00000389589 C8orf87E5RJ46 101 aa14.46□□□□□ -0.09
SHOX2-201ENST00000389589 ZCCHC13Q8WW36 166 aaKnown RBP14.46□□□□□ -0.09
SHOX2-201ENST00000389589 MRPL34Q9BQ48 92 aaKnown RBP14.46□□□□□ -0.09
SHOX2-201ENST00000389589 FAM236DA0A1B0GTK5 79 aa14.46□□□□□ -0.09
SHOX2-201ENST00000389589 FAM236CP0DP71 79 aa14.46□□□□□ -0.09
SHOX2-201ENST00000389589 NOTCH2NLQ7Z3S9 236 aa14.45□□□□□ -0.1
SHOX2-201ENST00000389589 SPAG11AQ6PDA7 123 aa14.44□□□□□ -0.1
SHOX2-201ENST00000389589 H3BPC8 53 aa14.43□□□□□ -0.1
SHOX2-201ENST00000389589 LINC00304Q8N9R0 145 aa14.43□□□□□ -0.1
SHOX2-201ENST00000389589 FAT1Q14517 4588 aa14.43□□□□□ -0.1
SHOX2-201ENST00000389589 H0Y9P7 68 aa14.42□□□□□ -0.1
SHOX2-201ENST00000389589 RPS29P62273 56 aaKnown RBP14.42□□□□□ -0.1
SHOX2-201ENST00000389589 FAM229AH3BQW9 127 aa14.4□□□□□ -0.1
SHOX2-201ENST00000389589 TRAV22A0A0B4J277 110 aa14.38□□□□□ -0.11
SHOX2-201ENST00000389589 ATP5EP56381 51 aaPredicted RBP14.38□□□□□ -0.11
SHOX2-201ENST00000389589 RYR3Q15413 4870 aa14.38□□□□□ -0.11
SHOX2-201ENST00000389589 NDUFS5O43920 106 aa14.37□□□□□ -0.11
SHOX2-201ENST00000389589 RPS28P62857 69 aaKnown RBP14.37□□□□□ -0.11
SHOX2-201ENST00000389589 LINC00208Q96KT6 92 aa14.36□□□□□ -0.11
SHOX2-201ENST00000389589 LINC00313P59037 77 aa14.35□□□□□ -0.11
SHOX2-201ENST00000389589 PKHD1L1Q86WI1 4243 aa14.33□□□□□ -0.12
SHOX2-201ENST00000389589 C1orf64Q8NEQ6 169 aa14.29□□□□□ -0.12
SHOX2-201ENST00000389589 Q5VSD8 79 aa14.24□□□□□ -0.13
SHOX2-201ENST00000389589 SERP1Q9Y6X1 66 aa14.23□□□□□ -0.13
SHOX2-201ENST00000389589 Q8N9P0 234 aaPredicted RBP14.19□□□□□ -0.14
SHOX2-201ENST00000389589 HSPG2P98160 4391 aa14.19□□□□□ -0.14
SHOX2-201ENST00000389589 KRTAP16-1A8MUX0 517 aa14.16□□□□□ -0.14
SHOX2-201ENST00000389589 RYR1P21817 5038 aa14.14□□□□□ -0.15
SHOX2-201ENST00000389589 OXTP01178 125 aa14.11□□□□□ -0.15
SHOX2-201ENST00000389589 KRTAP13-3Q3SY46 172 aa14.11□□□□□ -0.15
SHOX2-201ENST00000389589 SPANXA2-OT1Q8N9U9 137 aa14.11□□□□□ -0.15
SHOX2-201ENST00000389589 Q5W150 140 aa14.1□□□□□ -0.15
SHOX2-201ENST00000389589 LOC101927531A0A1B0GV80 90 aa14.08□□□□□ -0.16
SHOX2-201ENST00000389589 CYP4F30PQ9H0H9 118 aa14.08□□□□□ -0.16
SHOX2-201ENST00000389589 KRTAP10-8P60410 259 aa14.03□□□□□ -0.16
SHOX2-201ENST00000389589 PCOTHQ58A44 107 aa14□□□□□ -0.17
SHOX2-201ENST00000389589 PRR4Q16378 134 aa13.99□□□□□ -0.17
SHOX2-201ENST00000389589 Q8N1X5 172 aa13.97□□□□□ -0.17
SHOX2-201ENST00000389589 IGLV7-46A0A075B6I9 117 aa13.96□□□□□ -0.17
SHOX2-201ENST00000389589 FLG2Q5D862 2391 aaPredicted RBP13.95□□□□□ -0.18
SHOX2-201ENST00000389589 KRTAP17-1Q9BYP8 105 aa13.94□□□□□ -0.18
SHOX2-201ENST00000389589 TNXBP22105 4242 aa13.93□□□□□ -0.18
SHOX2-201ENST00000389589 SMIM26A0A096LP01 95 aa13.91□□□□□ -0.18
SHOX2-201ENST00000389589 RETNLBQ9BQ08 111 aa13.91□□□□□ -0.18
SHOX2-201ENST00000389589 KIAA1109Q2LD37 5005 aa13.91□□□□□ -0.18
SHOX2-201ENST00000389589 LRP1Q07954 4544 aaKnown RBP13.88□□□□□ -0.19
SHOX2-201ENST00000389589 IGKV2-30P06310 120 aa13.86□□□□□ -0.19
SHOX2-201ENST00000389589 EPPK1P58107 5090 aaKnown RBP13.85□□□□□ -0.19
SHOX2-201ENST00000389589 C9orf92A6NGG3 77 aa13.84□□□□□ -0.19
SHOX2-201ENST00000389589 FAT3Q8TDW7 4589 aa13.84□□□□□ -0.19
SHOX2-201ENST00000389589 C20orf166-AS1Q96NR2 134 aa13.81□□□□□ -0.2
SHOX2-201ENST00000389589 A8MUU9 505 aa13.79□□□□□ -0.2
SHOX2-201ENST00000389589 FP248Q71RG6 208 aaPredicted RBP13.77□□□□□ -0.21
SHOX2-201ENST00000389589 IGKV2D-30A0A075B6S6 120 aa13.72□□□□□ -0.21
SHOX2-201ENST00000389589 MT1HL1P0DM35 61 aa13.72□□□□□ -0.21
SHOX2-201ENST00000389589 HRES1P13985 223 aa13.72□□□□□ -0.21
SHOX2-201ENST00000389589 COA5Q86WW8 74 aa13.68□□□□□ -0.22
SHOX2-201ENST00000389589 DMBT1Q9UGM3 2413 aaPredicted RBP13.67□□□□□ -0.22
SHOX2-201ENST00000389589 C7orf65Q6ZTY9 151 aa13.65□□□□□ -0.22
SHOX2-201ENST00000389589 Q75L30 129 aa13.64□□□□□ -0.23
SHOX2-201ENST00000389589 C4orf26Q17RF5 130 aa13.61□□□□□ -0.23
SHOX2-201ENST00000389589 DMAC1Q96GE9 116 aa13.6□□□□□ -0.23
SHOX2-201ENST00000389589 MPLKIPQ8TAP9 179 aa13.59□□□□□ -0.23
SHOX2-201ENST00000389589 ACYP2P14621 99 aa13.59□□□□□ -0.23
SHOX2-201ENST00000389589 MYCBP2O75592 4640 aa13.58□□□□□ -0.24
SHOX2-201ENST00000389589 Q1T7F1 81 aa13.55□□□□□ -0.24
SHOX2-201ENST00000389589 V9GYY9 64 aa13.5□□□□□ -0.25
SHOX2-201ENST00000389589 KRTAP4-5Q9BYR2 181 aa13.49□□□□□ -0.25
SHOX2-201ENST00000389589 ATP11AUNQ6ZP68 121 aa13.43□□□□□ -0.26
SHOX2-201ENST00000389589 BIRC6Q9NR09 4857 aa13.43□□□□□ -0.26
SHOX2-201ENST00000389589 RPL37P61927 97 aaKnown RBP13.42□□□□□ -0.26
SHOX2-201ENST00000389589 XP32Q5T750 250 aa13.42□□□□□ -0.26
SHOX2-201ENST00000389589 SPINK7P58062 85 aa13.41□□□□□ -0.26
SHOX2-201ENST00000389589 CHKB-CPT1BH3BT56 60 aa13.38□□□□□ -0.27
SHOX2-201ENST00000389589 A8MUN3 132 aa13.36□□□□□ -0.27
SHOX2-201ENST00000389589 TPRXLQ17RH7 258 aa13.29□□□□□ -0.28
SHOX2-201ENST00000389589 PSPHP1O15172 72 aa13.27□□□□□ -0.28
SHOX2-201ENST00000389589 LINC01558Q9Y6Z2 57 aa13.26□□□□□ -0.29
SHOX2-201ENST00000389589 PRR15LQ9BU68 103 aa13.2□□□□□ -0.3
SHOX2-201ENST00000389589 ABCA13Q86UQ4 5058 aa13.19□□□□□ -0.3
SHOX2-201ENST00000389589 J3QL48 77 aa13.17□□□□□ -0.3
SHOX2-201ENST00000389589 HERC2O95714 4834 aa13.17□□□□□ -0.3
SHOX2-201ENST00000389589 Q5VV11 94 aa13.16□□□□□ -0.3
SHOX2-201ENST00000389589 COX6B2Q6YFQ2 88 aa13.14□□□□□ -0.31
SHOX2-201ENST00000389589 KRTAP3-1Q9BYR8 98 aa13.14□□□□□ -0.31
SHOX2-201ENST00000389589 SPTSSBQ8NFR3 76 aa13.04□□□□□ -0.32
SHOX2-201ENST00000389589 BRK1Q8WUW1 75 aa13.01□□□□□ -0.33
SHOX2-201ENST00000389589 A0A1B0GU69 56 aa12.94□□□□□ -0.34
SHOX2-201ENST00000389589 LRP2P98164 4655 aa12.93□□□□□ -0.34
SHOX2-201ENST00000389589 PRO0628Q9UI54 55 aa12.92□□□□□ -0.34
SHOX2-201ENST00000389589 LPAP08519 4548 aa12.89□□□□□ -0.35
SHOX2-201ENST00000389589 A6NED7 52 aa12.88□□□□□ -0.35
SHOX2-201ENST00000389589 SEC61BP60468 96 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms