RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 ASB16-AS1Q495Z4 193 aa12.76□□□□□ -0.37
TRIM54-202ENST00000380075 SSBP3-AS1Q7Z2R9 100 aa12.76□□□□□ -0.37
TRIM54-202ENST00000380075 A0A1B0GVX0 72 aa12.73□□□□□ -0.37
TRIM54-202ENST00000380075 SMIM26A0A096LP01 95 aa12.72□□□□□ -0.37
TRIM54-202ENST00000380075 C8orf17Q9NRJ1 99 aa12.72□□□□□ -0.37
TRIM54-202ENST00000380075 H0Y9P7 68 aa12.72□□□□□ -0.37
TRIM54-202ENST00000380075 TP53AIP1Q9HCN2 124 aa12.7□□□□□ -0.38
TRIM54-202ENST00000380075 Q5XG85 94 aa12.69□□□□□ -0.38
TRIM54-202ENST00000380075 LINC00208Q96KT6 92 aa12.69□□□□□ -0.38
TRIM54-202ENST00000380075 TRAV22A0A0B4J277 110 aa12.69□□□□□ -0.38
TRIM54-202ENST00000380075 SMR3BP02814 79 aaPredicted RBP12.68□□□□□ -0.38
TRIM54-202ENST00000380075 FAT1Q14517 4588 aa12.67□□□□□ -0.38
TRIM54-202ENST00000380075 KRTAP17-1Q9BYP8 105 aa12.65□□□□□ -0.38
TRIM54-202ENST00000380075 IGHV6-1A0A0B4J1U7 121 aa12.65□□□□□ -0.38
TRIM54-202ENST00000380075 FAM229BQ4G0N7 80 aa12.64□□□□□ -0.39
TRIM54-202ENST00000380075 CYP4F30PQ9H0H9 118 aa12.64□□□□□ -0.39
TRIM54-202ENST00000380075 HERC2O95714 4834 aa12.63□□□□□ -0.39
TRIM54-202ENST00000380075 C1orf64Q8NEQ6 169 aa12.6□□□□□ -0.39
TRIM54-202ENST00000380075 SPANXA2-OT1Q8N9U9 137 aa12.6□□□□□ -0.39
TRIM54-202ENST00000380075 MRPL34Q9BQ48 92 aaKnown RBP12.6□□□□□ -0.39
TRIM54-202ENST00000380075 VPS13BQ7Z7G8 4022 aa12.58□□□□□ -0.39
TRIM54-202ENST00000380075 FP248Q71RG6 208 aaPredicted RBP12.57□□□□□ -0.4
TRIM54-202ENST00000380075 C4orf26Q17RF5 130 aa12.56□□□□□ -0.4
TRIM54-202ENST00000380075 Q8N1X5 172 aa12.56□□□□□ -0.4
TRIM54-202ENST00000380075 A0A087X002 238 aa12.54□□□□□ -0.4
TRIM54-202ENST00000380075 SPINK6Q6UWN8 80 aa12.53□□□□□ -0.4
TRIM54-202ENST00000380075 C8orf87E5RJ46 101 aa12.52□□□□□ -0.4
TRIM54-202ENST00000380075 KRTAP13-2Q52LG2 175 aa12.52□□□□□ -0.4
TRIM54-202ENST00000380075 Q5VSD8 79 aa12.52□□□□□ -0.41
TRIM54-202ENST00000380075 FAM229AH3BQW9 127 aa12.51□□□□□ -0.41
TRIM54-202ENST00000380075 NDUFS5O43920 106 aa12.51□□□□□ -0.41
TRIM54-202ENST00000380075 NOTCH2NLQ7Z3S9 236 aa12.49□□□□□ -0.41
TRIM54-202ENST00000380075 KRTAP4-5Q9BYR2 181 aa12.49□□□□□ -0.41
TRIM54-202ENST00000380075 KRTAP1-4P0C5Y4 121 aa12.48□□□□□ -0.41
TRIM54-202ENST00000380075 KRTAP10-4P60372 401 aaPredicted RBP12.45□□□□□ -0.42
TRIM54-202ENST00000380075 PRR4Q16378 134 aa12.45□□□□□ -0.42
TRIM54-202ENST00000380075 PLA2G1BP04054 148 aaKnown RBP12.44□□□□□ -0.42
TRIM54-202ENST00000380075 LIMD2Q9BT23 127 aa12.44□□□□□ -0.42
TRIM54-202ENST00000380075 IGLV7-46A0A075B6I9 117 aa12.4□□□□□ -0.42
TRIM54-202ENST00000380075 C1orf195Q5TG92 126 aa12.4□□□□□ -0.42
TRIM54-202ENST00000380075 ABCA13Q86UQ4 5058 aa12.39□□□□□ -0.43
TRIM54-202ENST00000380075 LINC00313P59037 77 aa12.36□□□□□ -0.43
TRIM54-202ENST00000380075 MPLKIPQ8TAP9 179 aa12.36□□□□□ -0.43
TRIM54-202ENST00000380075 LOC101927531A0A1B0GV80 90 aa12.35□□□□□ -0.43
TRIM54-202ENST00000380075 C4orf48Q5BLP8 95 aa12.34□□□□□ -0.43
TRIM54-202ENST00000380075 Q1T7F1 81 aa12.33□□□□□ -0.44
TRIM54-202ENST00000380075 TYMSOSQ8TAI1 123 aa12.33□□□□□ -0.44
TRIM54-202ENST00000380075 PCOTHQ58A44 107 aa12.32□□□□□ -0.44
TRIM54-202ENST00000380075 SPINK1P00995 79 aa12.31□□□□□ -0.44
TRIM54-202ENST00000380075 KRTAP13-3Q3SY46 172 aa12.31□□□□□ -0.44
TRIM54-202ENST00000380075 Q8N9P0 234 aaPredicted RBP12.29□□□□□ -0.44
TRIM54-202ENST00000380075 PKHD1L1Q86WI1 4243 aa12.29□□□□□ -0.44
TRIM54-202ENST00000380075 PCLOQ9Y6V0 5065 aa12.28□□□□□ -0.44
TRIM54-202ENST00000380075 Q5W150 140 aa12.27□□□□□ -0.44
TRIM54-202ENST00000380075 V9GYY9 64 aa12.27□□□□□ -0.45
TRIM54-202ENST00000380075 RPS29P62273 56 aaKnown RBP12.25□□□□□ -0.45
TRIM54-202ENST00000380075 MYCBP2O75592 4640 aa12.23□□□□□ -0.45
TRIM54-202ENST00000380075 SPAG11AQ6PDA7 123 aa12.21□□□□□ -0.45
TRIM54-202ENST00000380075 COA5Q86WW8 74 aa12.21□□□□□ -0.46
TRIM54-202ENST00000380075 FLG2Q5D862 2391 aaPredicted RBP12.2□□□□□ -0.46
TRIM54-202ENST00000380075 KRTAP16-1A8MUX0 517 aa12.19□□□□□ -0.46
TRIM54-202ENST00000380075 LINC00304Q8N9R0 145 aa12.18□□□□□ -0.46
TRIM54-202ENST00000380075 LRP1Q07954 4544 aaKnown RBP12.17□□□□□ -0.46
TRIM54-202ENST00000380075 PRR26Q8N8Z3 221 aa12.15□□□□□ -0.46
TRIM54-202ENST00000380075 FAT3Q8TDW7 4589 aa12.12□□□□□ -0.47
TRIM54-202ENST00000380075 PRO0628Q9UI54 55 aa12.1□□□□□ -0.47
TRIM54-202ENST00000380075 IGKV2-30P06310 120 aa12.08□□□□□ -0.48
TRIM54-202ENST00000380075 HRES1P13985 223 aa12.06□□□□□ -0.48
TRIM54-202ENST00000380075 PSPHP1O15172 72 aa12.03□□□□□ -0.48
TRIM54-202ENST00000380075 BRK1Q8WUW1 75 aa12.03□□□□□ -0.48
TRIM54-202ENST00000380075 ACYP2P14621 99 aa12□□□□□ -0.49
TRIM54-202ENST00000380075 RETNLBQ9BQ08 111 aa12□□□□□ -0.49
TRIM54-202ENST00000380075 TNXBP22105 4242 aa11.99□□□□□ -0.49
TRIM54-202ENST00000380075 A8MUN3 132 aa11.99□□□□□ -0.49
TRIM54-202ENST00000380075 DMAC1Q96GE9 116 aa11.98□□□□□ -0.49
TRIM54-202ENST00000380075 MT1HL1P0DM35 61 aa11.94□□□□□ -0.5
TRIM54-202ENST00000380075 Q5VV11 94 aa11.94□□□□□ -0.5
TRIM54-202ENST00000380075 J3QL48 77 aa11.92□□□□□ -0.5
TRIM54-202ENST00000380075 LINC01558Q9Y6Z2 57 aa11.92□□□□□ -0.5
TRIM54-202ENST00000380075 PRR15LQ9BU68 103 aa11.92□□□□□ -0.5
TRIM54-202ENST00000380075 KRTAP10-8P60410 259 aa11.91□□□□□ -0.5
TRIM54-202ENST00000380075 IGKV2D-30A0A075B6S6 120 aa11.88□□□□□ -0.51
TRIM54-202ENST00000380075 DMBT1Q9UGM3 2413 aaPredicted RBP11.87□□□□□ -0.51
TRIM54-202ENST00000380075 Q75L30 129 aa11.87□□□□□ -0.51
TRIM54-202ENST00000380075 CHKB-CPT1BH3BT56 60 aa11.83□□□□□ -0.52
TRIM54-202ENST00000380075 C7orf65Q6ZTY9 151 aa11.82□□□□□ -0.52
TRIM54-202ENST00000380075 HERC1Q15751 4861 aa11.82□□□□□ -0.52
TRIM54-202ENST00000380075 C20orf166-AS1Q96NR2 134 aa11.81□□□□□ -0.52
TRIM54-202ENST00000380075 A8MUU9 505 aa11.79□□□□□ -0.52
TRIM54-202ENST00000380075 C9orf92A6NGG3 77 aa11.72□□□□□ -0.53
TRIM54-202ENST00000380075 A6NED7 52 aa11.68□□□□□ -0.54
TRIM54-202ENST00000380075 CDC42SE1Q9NRR8 79 aa11.59□□□□□ -0.55
TRIM54-202ENST00000380075 LCA10Q71F78 164 aa11.56□□□□□ -0.56
TRIM54-202ENST00000380075 A0A1B0GU69 56 aa11.54□□□□□ -0.56
TRIM54-202ENST00000380075 A8MU10 97 aa11.52□□□□□ -0.57
TRIM54-202ENST00000380075 SPINK7P58062 85 aa11.52□□□□□ -0.57
TRIM54-202ENST00000380075 ATP11AUNQ6ZP68 121 aa11.5□□□□□ -0.57
TRIM54-202ENST00000380075 HMCN2Q8NDA2 5059 aa11.5□□□□□ -0.57
TRIM54-202ENST00000380075 SPTSSBQ8NFR3 76 aa11.47□□□□□ -0.57
TRIM54-202ENST00000380075 PMAIP1Q13794 54 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms