RNA–Protein interactions for RNA: ENST00000375274.6

PTCH1-203, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 4,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-203ENST00000375274 Q6ZSA8 131 aa6.76□□□□□ -1.33
PTCH1-203ENST00000375274 KRTAP10-2P60368 255 aa6.76□□□□□ -1.33
PTCH1-203ENST00000375274 CRYBG3Q68DQ2 2970 aa6.76□□□□□ -1.33
PTCH1-203ENST00000375274 TENM4Q6N022 2769 aa6.75□□□□□ -1.33
PTCH1-203ENST00000375274 KRTAP10-1P60331 282 aa6.75□□□□□ -1.33
PTCH1-203ENST00000375274 MXRA5Q9NR99 2828 aa6.69□□□□□ -1.34
PTCH1-203ENST00000375274 S4R3F8 94 aa6.68□□□□□ -1.34
PTCH1-203ENST00000375274 Q6ZRN7 208 aaPredicted RBP6.68□□□□□ -1.34
PTCH1-203ENST00000375274 SPATA8Q6RVD6 105 aa6.67□□□□□ -1.34
PTCH1-203ENST00000375274 RPL37P61927 97 aaKnown RBP6.67□□□□□ -1.34
PTCH1-203ENST00000375274 LUZP6Q538Z0 58 aa6.67□□□□□ -1.34
PTCH1-203ENST00000375274 H3BS24 57 aa6.67□□□□□ -1.34
PTCH1-203ENST00000375274 ASB16-AS1Q495Z4 193 aa6.67□□□□□ -1.34
PTCH1-203ENST00000375274 KRTAP13-1Q8IUC0 172 aa6.66□□□□□ -1.34
PTCH1-203ENST00000375274 A8MU10 97 aa6.65□□□□□ -1.34
PTCH1-203ENST00000375274 CAMK2N1Q7Z7J9 78 aa6.65□□□□□ -1.34
PTCH1-203ENST00000375274 A6NN06 94 aa6.65□□□□□ -1.35
PTCH1-203ENST00000375274 H1FX-AS1Q4G0G2 97 aa6.65□□□□□ -1.35
PTCH1-203ENST00000375274 ROMO1P60602 79 aa6.6□□□□□ -1.35
PTCH1-203ENST00000375274 TENM3Q9P273 2699 aa6.59□□□□□ -1.35
PTCH1-203ENST00000375274 DCHS1Q96JQ0 3298 aa6.59□□□□□ -1.35
PTCH1-203ENST00000375274 R4GN34 69 aa6.58□□□□□ -1.36
PTCH1-203ENST00000375274 WDFY3Q8IZQ1 3526 aa6.57□□□□□ -1.36
PTCH1-203ENST00000375274 KRTAP13-2Q52LG2 175 aa6.55□□□□□ -1.36
PTCH1-203ENST00000375274 RELNP78509 3460 aa6.54□□□□□ -1.36
PTCH1-203ENST00000375274 CELSR1Q9NYQ6 3014 aa6.54□□□□□ -1.36
PTCH1-203ENST00000375274 Q5VSD8 79 aa6.52□□□□□ -1.37
PTCH1-203ENST00000375274 ADM2Q7Z4H4 148 aa6.52□□□□□ -1.37
PTCH1-203ENST00000375274 RPS29P62273 56 aaKnown RBP6.49□□□□□ -1.37
PTCH1-203ENST00000375274 TENM1Q9UKZ4 2725 aa6.47□□□□□ -1.37
PTCH1-203ENST00000375274 M0QZ58 72 aa6.46□□□□□ -1.37
PTCH1-203ENST00000375274 MUC3AQ02505 3323 aa6.46□□□□□ -1.38
PTCH1-203ENST00000375274 SEC61BP60468 96 aaKnown RBP6.45□□□□□ -1.38
PTCH1-203ENST00000375274 KRTAP25-1Q3LHN0 102 aa6.44□□□□□ -1.38
PTCH1-203ENST00000375274 PDZD2O15018 2839 aa6.43□□□□□ -1.38
PTCH1-203ENST00000375274 ASPMQ8IZT6 3477 aa6.41□□□□□ -1.38
PTCH1-203ENST00000375274 M0R2T5 61 aa6.4□□□□□ -1.38
PTCH1-203ENST00000375274 ZFHX4Q86UP3 3567 aa6.4□□□□□ -1.38
PTCH1-203ENST00000375274 LAMA5O15230 3695 aa6.37□□□□□ -1.39
PTCH1-203ENST00000375274 A0A0A0MQY5 61 aa6.37□□□□□ -1.39
PTCH1-203ENST00000375274 DMDP11532 3685 aa6.37□□□□□ -1.39
PTCH1-203ENST00000375274 TGP01266 2768 aa6.36□□□□□ -1.39
PTCH1-203ENST00000375274 PKD1L1Q8TDX9 2849 aa6.36□□□□□ -1.39
PTCH1-203ENST00000375274 A8MUU9 505 aa6.32□□□□□ -1.4
PTCH1-203ENST00000375274 C20orf166-AS1Q96NR2 134 aa6.3□□□□□ -1.4
PTCH1-203ENST00000375274 FBN1P35555 2871 aaKnown RBP6.29□□□□□ -1.4
PTCH1-203ENST00000375274 VWFP04275 2813 aa6.29□□□□□ -1.4
PTCH1-203ENST00000375274 CSMD1Q96PZ7 3565 aa6.28□□□□□ -1.4
PTCH1-203ENST00000375274 KRTAP1-4P0C5Y4 121 aa6.27□□□□□ -1.41
PTCH1-203ENST00000375274 TENM2Q9NT68 2774 aa6.24□□□□□ -1.41
PTCH1-203ENST00000375274 SMG1Q96Q15 3661 aaKnown RBP6.2□□□□□ -1.42
PTCH1-203ENST00000375274 NDUFAF8A1L188 74 aa6.2□□□□□ -1.42
PTCH1-203ENST00000375274 KRTAP16-1A8MUX0 517 aa6.18□□□□□ -1.42
PTCH1-203ENST00000375274 H0YAA0 97 aa6.17□□□□□ -1.42
PTCH1-203ENST00000375274 CUBNO60494 3623 aa6.15□□□□□ -1.43
PTCH1-203ENST00000375274 OTOGQ6ZRI0 2925 aa6.14□□□□□ -1.43
PTCH1-203ENST00000375274 PLAC4Q8WY50 150 aa6.14□□□□□ -1.43
PTCH1-203ENST00000375274 BSNQ9UPA5 3926 aa6.11□□□□□ -1.43
PTCH1-203ENST00000375274 KRTAP13-3Q3SY46 172 aa6.11□□□□□ -1.43
PTCH1-203ENST00000375274 SVEP1Q4LDE5 3571 aa6.11□□□□□ -1.43
PTCH1-203ENST00000375274 SRRM2Q9UQ35 2752 aaKnown RBP6.08□□□□□ -1.44
PTCH1-203ENST00000375274 C10orf95Q9H7T3 257 aa6.07□□□□□ -1.44
PTCH1-203ENST00000375274 XP32Q5T750 250 aa6.07□□□□□ -1.44
PTCH1-203ENST00000375274 FBN3Q75N90 2809 aa6.02□□□□□ -1.45
PTCH1-203ENST00000375274 TNP1P09430 55 aa5.99□□□□□ -1.45
PTCH1-203ENST00000375274 ZFHX3Q15911 3703 aa5.96□□□□□ -1.45
PTCH1-203ENST00000375274 P0C880 135 aa5.96□□□□□ -1.46
PTCH1-203ENST00000375274 NBPF19A0A087WUL8 3843 aa5.96□□□□□ -1.46
PTCH1-203ENST00000375274 ANK3Q12955 4377 aaKnown RBP5.95□□□□□ -1.46
PTCH1-203ENST00000375274 PP632Q6XCG6 107 aa5.92□□□□□ -1.46
PTCH1-203ENST00000375274 CSMD2Q7Z408 3487 aa5.91□□□□□ -1.46
PTCH1-203ENST00000375274 MEGF8Q7Z7M0 2845 aa5.9□□□□□ -1.46
PTCH1-203ENST00000375274 TPRXLQ17RH7 258 aa5.89□□□□□ -1.47
PTCH1-203ENST00000375274 SPENQ96T58 3664 aaKnown RBP5.88□□□□□ -1.47
PTCH1-203ENST00000375274 COL7A1Q02388 2944 aa5.88□□□□□ -1.47
PTCH1-203ENST00000375274 KRTAP10-8P60410 259 aa5.82□□□□□ -1.48
PTCH1-203ENST00000375274 TRRAPQ9Y4A5 3859 aa5.78□□□□□ -1.48
PTCH1-203ENST00000375274 KRTAP3-1Q9BYR8 98 aa5.77□□□□□ -1.49
PTCH1-203ENST00000375274 A0A1B0GVY2 172 aa5.76□□□□□ -1.49
PTCH1-203ENST00000375274 KRTAP12-2P59991 146 aa5.73□□□□□ -1.49
PTCH1-203ENST00000375274 AKAP9Q99996 3911 aa5.69□□□□□ -1.5
PTCH1-203ENST00000375274 KRTAP12-1P59990 96 aa5.67□□□□□ -1.5
PTCH1-203ENST00000375274 KRTAP10-6P60371 365 aaPredicted RBP5.62□□□□□ -1.51
PTCH1-203ENST00000375274 KRTAP13-4Q3LI77 160 aa5.6□□□□□ -1.51
PTCH1-203ENST00000375274 KRTAP10-10P60014 251 aa5.59□□□□□ -1.51
PTCH1-203ENST00000375274 ZNF469Q96JG9 3925 aaPredicted RBP5.53□□□□□ -1.52
PTCH1-203ENST00000375274 VPS13CQ709C8 3753 aa5.51□□□□□ -1.53
PTCH1-203ENST00000375274 PRO2289Q9P1D8 64 aa5.45□□□□□ -1.54
PTCH1-203ENST00000375274 KRTAP3-2Q9BYR7 98 aa5.43□□□□□ -1.54
PTCH1-203ENST00000375274 KRTAP3-3Q9BYR6 98 aa5.42□□□□□ -1.54
PTCH1-203ENST00000375274 HUWE1Q7Z6Z7 4374 aaKnown RBP5.41□□□□□ -1.54
PTCH1-203ENST00000375274 CSMD3Q7Z407 3707 aa5.37□□□□□ -1.55
PTCH1-203ENST00000375274 MT1HL1P0DM35 61 aa5.34□□□□□ -1.55
PTCH1-203ENST00000375274 DNAH9Q9NYC9 4486 aa5.34□□□□□ -1.55
PTCH1-203ENST00000375274 KRTAP10-4P60372 401 aaPredicted RBP5.32□□□□□ -1.56
PTCH1-203ENST00000375274 ANK2Q01484 3957 aa5.31□□□□□ -1.56
PTCH1-203ENST00000375274 KRTAP15-1Q3LI76 137 aa5.31□□□□□ -1.56
PTCH1-203ENST00000375274 ALMS1Q8TCU4 4167 aa5.31□□□□□ -1.56
PTCH1-203ENST00000375274 DNAH3Q8TD57 4116 aa5.22□□□□□ -1.57
PTCH1-203ENST00000375274 CMYA5Q8N3K9 4069 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms