RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 LINC00472Q9H8W2 130 aa6.81□□□□□ -1.32
PTCH1-202ENST00000375271 TMEM238LA0A1B0GVL6 79 aa6.8□□□□□ -1.32
PTCH1-202ENST00000375271 HIST3H2BBQ8N257 126 aa6.8□□□□□ -1.32
PTCH1-202ENST00000375271 S100A6P06703 90 aa6.79□□□□□ -1.32
PTCH1-202ENST00000375271 WFDC13Q8IUB5 93 aa6.79□□□□□ -1.32
PTCH1-202ENST00000375271 TMEM256-PLSCR3K7ERE1 68 aa6.78□□□□□ -1.32
PTCH1-202ENST00000375271 PRO1854Q9UHT4 67 aa6.78□□□□□ -1.32
PTCH1-202ENST00000375271 DLEU1O43261 78 aa6.77□□□□□ -1.33
PTCH1-202ENST00000375271 TRIAP1O43715 76 aa6.75□□□□□ -1.33
PTCH1-202ENST00000375271 NDUFB1O75438 58 aa6.75□□□□□ -1.33
PTCH1-202ENST00000375271 PSMB2P49721 201 aa6.75□□□□□ -1.33
PTCH1-202ENST00000375271 J3KT08 172 aa6.74□□□□□ -1.33
PTCH1-202ENST00000375271 C14orf144Q96I85 54 aa6.74□□□□□ -1.33
PTCH1-202ENST00000375271 DSCR8Q96T75 97 aa6.74□□□□□ -1.33
PTCH1-202ENST00000375271 HIGD1BQ9P298 99 aa6.74□□□□□ -1.33
PTCH1-202ENST00000375271 COX6CP09669 75 aa6.73□□□□□ -1.33
PTCH1-202ENST00000375271 TMA7Q9Y2S6 64 aaKnown RBP6.73□□□□□ -1.33
PTCH1-202ENST00000375271 C21orf62-AS1Q17RA5 79 aa6.72□□□□□ -1.33
PTCH1-202ENST00000375271 CEND1Q8N111 149 aa6.72□□□□□ -1.33
PTCH1-202ENST00000375271 PAM16Q9Y3D7 125 aa6.7□□□□□ -1.34
PTCH1-202ENST00000375271 SPATA45Q537H7 98 aa6.69□□□□□ -1.34
PTCH1-202ENST00000375271 RBM3P98179 157 aaKnown RBP6.68□□□□□ -1.34
PTCH1-202ENST00000375271 UBE2V1Q13404 147 aa6.68□□□□□ -1.34
PTCH1-202ENST00000375271 VAMP8Q9BV40 100 aa6.66□□□□□ -1.34
PTCH1-202ENST00000375271 FXYD2P54710 66 aa6.64□□□□□ -1.35
PTCH1-202ENST00000375271 H1FX-AS1Q4G0G2 97 aa6.64□□□□□ -1.35
PTCH1-202ENST00000375271 C2orf91Q6ZV80 131 aa6.64□□□□□ -1.35
PTCH1-202ENST00000375271 NEBP20929 6669 aa6.64□□□□□ -1.35
PTCH1-202ENST00000375271 IGKV3D-7A0A0C4DH55 119 aa6.63□□□□□ -1.35
PTCH1-202ENST00000375271 C9JAW5 83 aa6.63□□□□□ -1.35
PTCH1-202ENST00000375271 C8orf17Q9NRJ1 99 aa6.62□□□□□ -1.35
PTCH1-202ENST00000375271 Q6ZVQ6 151 aa6.6□□□□□ -1.35
PTCH1-202ENST00000375271 A6NN06 94 aa6.59□□□□□ -1.35
PTCH1-202ENST00000375271 SCGB1C2P0DMR2 95 aa6.59□□□□□ -1.35
PTCH1-202ENST00000375271 K7ERJ3 54 aa6.58□□□□□ -1.36
PTCH1-202ENST00000375271 Q6ZQT0 140 aa6.58□□□□□ -1.36
PTCH1-202ENST00000375271 FAM236AA0A1B0GUQ0 79 aa6.56□□□□□ -1.36
PTCH1-202ENST00000375271 FAM236BA0A1B0GV22 79 aa6.56□□□□□ -1.36
PTCH1-202ENST00000375271 NDUFS5O43920 106 aa6.56□□□□□ -1.36
PTCH1-202ENST00000375271 HSD52Q0P140 79 aa6.56□□□□□ -1.36
PTCH1-202ENST00000375271 KRTAP20-1Q3LI63 56 aa6.55□□□□□ -1.36
PTCH1-202ENST00000375271 MUC12Q9UKN1 5478 aa6.53□□□□□ -1.36
PTCH1-202ENST00000375271 IGKV2D-30A0A075B6S6 120 aa6.52□□□□□ -1.37
PTCH1-202ENST00000375271 IGKV2-30P06310 120 aa6.52□□□□□ -1.37
PTCH1-202ENST00000375271 BAALC-AS2P0C853 105 aa6.52□□□□□ -1.37
PTCH1-202ENST00000375271 MRPL34Q9BQ48 92 aaKnown RBP6.52□□□□□ -1.37
PTCH1-202ENST00000375271 A0A1B0GW54 56 aa6.5□□□□□ -1.37
PTCH1-202ENST00000375271 TMEM254Q8TBM7 123 aa6.5□□□□□ -1.37
PTCH1-202ENST00000375271 Q5VV11 94 aa6.49□□□□□ -1.37
PTCH1-202ENST00000375271 C7orf65Q6ZTY9 151 aa6.49□□□□□ -1.37
PTCH1-202ENST00000375271 PRR15Q8IV56 129 aa6.49□□□□□ -1.37
PTCH1-202ENST00000375271 JMJD7-PLA2G4BH0Y9G9 81 aa6.48□□□□□ -1.37
PTCH1-202ENST00000375271 NREPQ16612 68 aa6.47□□□□□ -1.37
PTCH1-202ENST00000375271 hDV103S1A0JD37 113 aa6.46□□□□□ -1.38
PTCH1-202ENST00000375271 PDE6GP18545 87 aa6.46□□□□□ -1.38
PTCH1-202ENST00000375271 MMP24-AS1A0A0U1RRL7 71 aa6.44□□□□□ -1.38
PTCH1-202ENST00000375271 C5orf47Q569G3 176 aa6.44□□□□□ -1.38
PTCH1-202ENST00000375271 LOC110117498A0A087WWA1 95 aa6.43□□□□□ -1.38
PTCH1-202ENST00000375271 PCP4L1A6NKN8 68 aa6.43□□□□□ -1.38
PTCH1-202ENST00000375271 ATXN8Q156A1 80 aa6.43□□□□□ -1.38
PTCH1-202ENST00000375271 SMIM6P0DI80 62 aa6.4□□□□□ -1.38
PTCH1-202ENST00000375271 IMUPQ9GZP8 106 aa6.4□□□□□ -1.38
PTCH1-202ENST00000375271 C4orf26Q17RF5 130 aa6.39□□□□□ -1.39
PTCH1-202ENST00000375271 C14orf132Q9NPU4 83 aa6.39□□□□□ -1.39
PTCH1-202ENST00000375271 K7EQZ3 153 aa6.37□□□□□ -1.39
PTCH1-202ENST00000375271 UQCR10Q9UDW1 63 aa6.37□□□□□ -1.39
PTCH1-202ENST00000375271 MT1BP07438 61 aa6.36□□□□□ -1.39
PTCH1-202ENST00000375271 CSAG1Q6PB30 78 aa6.36□□□□□ -1.39
PTCH1-202ENST00000375271 S4R3F8 94 aa6.36□□□□□ -1.39
PTCH1-202ENST00000375271 KRTAP10-5P60370 271 aa6.34□□□□□ -1.39
PTCH1-202ENST00000375271 MDN1Q9NU22 5596 aa6.32□□□□□ -1.4
PTCH1-202ENST00000375271 BPY2O14599 106 aa6.32□□□□□ -1.4
PTCH1-202ENST00000375271 KRTAP5-9P26371 169 aa6.32□□□□□ -1.4
PTCH1-202ENST00000375271 Q5W150 140 aa6.32□□□□□ -1.4
PTCH1-202ENST00000375271 HCG22E2RYF7 251 aa6.31□□□□□ -1.4
PTCH1-202ENST00000375271 KRTAP19-8Q3LI54 63 aa6.31□□□□□ -1.4
PTCH1-202ENST00000375271 SPRR2GQ9BYE4 73 aa6.31□□□□□ -1.4
PTCH1-202ENST00000375271 CASC2Q6XLA1 102 aa6.3□□□□□ -1.4
PTCH1-202ENST00000375271 CXCL6P80162 114 aa6.28□□□□□ -1.4
PTCH1-202ENST00000375271 PYY3Q5JQD4 70 aa6.28□□□□□ -1.4
PTCH1-202ENST00000375271 KMT2DO14686 5537 aa6.28□□□□□ -1.4
PTCH1-202ENST00000375271 NAA38Q9BRA0 125 aaKnown RBP6.27□□□□□ -1.41
PTCH1-202ENST00000375271 KRTAP2-3P0C7H8 128 aa6.26□□□□□ -1.41
PTCH1-202ENST00000375271 KLKP1Q107X0 134 aa6.26□□□□□ -1.41
PTCH1-202ENST00000375271 KRTAP2-4Q9BYR9 128 aa6.26□□□□□ -1.41
PTCH1-202ENST00000375271 M0R143 59 aa6.24□□□□□ -1.41
PTCH1-202ENST00000375271 LCA10Q71F78 164 aa6.24□□□□□ -1.41
PTCH1-202ENST00000375271 C1orf64Q8NEQ6 169 aa6.24□□□□□ -1.41
PTCH1-202ENST00000375271 H3BS24 57 aa6.23□□□□□ -1.41
PTCH1-202ENST00000375271 Q8N9L7 120 aa6.21□□□□□ -1.42
PTCH1-202ENST00000375271 LOC100996750A0A140TA64 210 aa6.2□□□□□ -1.42
PTCH1-202ENST00000375271 TSTD3H0UI37 97 aa6.2□□□□□ -1.42
PTCH1-202ENST00000375271 KRTAP4-6Q9BYQ5 205 aa6.2□□□□□ -1.42
PTCH1-202ENST00000375271 CRIPTQ9P021 101 aa6.18□□□□□ -1.42
PTCH1-202ENST00000375271 SPRR2EP22531 72 aa6.16□□□□□ -1.42
PTCH1-202ENST00000375271 SPRR2BP35325 72 aa6.16□□□□□ -1.42
PTCH1-202ENST00000375271 SPRR2AP35326 72 aa6.16□□□□□ -1.42
PTCH1-202ENST00000375271 SPRR2FQ96RM1 72 aa6.16□□□□□ -1.42
PTCH1-202ENST00000375271 A0A1B0GV90 55 aa6.15□□□□□ -1.42
PTCH1-202ENST00000375271 KRTAP3-1Q9BYR8 98 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms