RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 C1orf195Q5TG92 126 aa7.89□□□□□ -1.15
PTPRF-202ENST00000372405 A0A1B0GVX0 72 aa7.88□□□□□ -1.15
PTPRF-202ENST00000372405 SPINK1P00995 79 aa7.87□□□□□ -1.15
PTPRF-202ENST00000372405 NOTCH2NLQ7Z3S9 236 aa7.87□□□□□ -1.15
PTPRF-202ENST00000372405 LINC00304Q8N9R0 145 aa7.87□□□□□ -1.15
PTPRF-202ENST00000372405 IGHV6-1A0A0B4J1U7 121 aa7.86□□□□□ -1.15
PTPRF-202ENST00000372405 C4orf48Q5BLP8 95 aa7.86□□□□□ -1.15
PTPRF-202ENST00000372405 CASC2Q6XLA1 102 aa7.86□□□□□ -1.15
PTPRF-202ENST00000372405 LIMD2Q9BT23 127 aa7.86□□□□□ -1.15
PTPRF-202ENST00000372405 C8orf17Q9NRJ1 99 aa7.86□□□□□ -1.15
PTPRF-202ENST00000372405 C20orf197Q8N268 126 aa7.85□□□□□ -1.15
PTPRF-202ENST00000372405 TNXBP22105 4242 aa7.85□□□□□ -1.15
PTPRF-202ENST00000372405 RPS28P62857 69 aaKnown RBP7.84□□□□□ -1.15
PTPRF-202ENST00000372405 KLKP1Q107X0 134 aa7.83□□□□□ -1.16
PTPRF-202ENST00000372405 hDV103S1A0JD37 113 aa7.82□□□□□ -1.16
PTPRF-202ENST00000372405 SPAG11AQ6PDA7 123 aa7.82□□□□□ -1.16
PTPRF-202ENST00000372405 FAT3Q8TDW7 4589 aa7.82□□□□□ -1.16
PTPRF-202ENST00000372405 RPS29P62273 56 aaKnown RBP7.81□□□□□ -1.16
PTPRF-202ENST00000372405 Q8N1X5 172 aa7.8□□□□□ -1.16
PTPRF-202ENST00000372405 H7BZZ5 65 aa7.79□□□□□ -1.16
PTPRF-202ENST00000372405 FLG2Q5D862 2391 aaPredicted RBP7.78□□□□□ -1.16
PTPRF-202ENST00000372405 MYCBP2O75592 4640 aa7.77□□□□□ -1.17
PTPRF-202ENST00000372405 KRTAP10-8P60410 259 aa7.77□□□□□ -1.17
PTPRF-202ENST00000372405 SNURFQ9Y675 71 aa7.77□□□□□ -1.17
PTPRF-202ENST00000372405 TMEM254Q8TBM7 123 aa7.76□□□□□ -1.17
PTPRF-202ENST00000372405 MRPL34Q9BQ48 92 aaKnown RBP7.75□□□□□ -1.17
PTPRF-202ENST00000372405 A0A0U1RQV1 116 aa7.74□□□□□ -1.17
PTPRF-202ENST00000372405 FAM236DA0A1B0GTK5 79 aa7.73□□□□□ -1.17
PTPRF-202ENST00000372405 C8orf87E5RJ46 101 aa7.73□□□□□ -1.17
PTPRF-202ENST00000372405 FAM236CP0DP71 79 aa7.73□□□□□ -1.17
PTPRF-202ENST00000372405 OXTP01178 125 aa7.73□□□□□ -1.17
PTPRF-202ENST00000372405 NDUFC1O43677 76 aa7.72□□□□□ -1.17
PTPRF-202ENST00000372405 LINC00313P59037 77 aa7.71□□□□□ -1.17
PTPRF-202ENST00000372405 C5orf47Q569G3 176 aa7.71□□□□□ -1.18
PTPRF-202ENST00000372405 KRTAP16-1A8MUX0 517 aa7.7□□□□□ -1.18
PTPRF-202ENST00000372405 SVIPQ8NHG7 77 aa7.69□□□□□ -1.18
PTPRF-202ENST00000372405 ZCCHC13Q8WW36 166 aaKnown RBP7.69□□□□□ -1.18
PTPRF-202ENST00000372405 KRTAP4-5Q9BYR2 181 aa7.69□□□□□ -1.18
PTPRF-202ENST00000372405 NDUFS5O43920 106 aa7.68□□□□□ -1.18
PTPRF-202ENST00000372405 RETNLBQ9BQ08 111 aa7.68□□□□□ -1.18
PTPRF-202ENST00000372405 MT1HL1P0DM35 61 aa7.68□□□□□ -1.18
PTPRF-202ENST00000372405 TP53AIP1Q9HCN2 124 aa7.67□□□□□ -1.18
PTPRF-202ENST00000372405 H0Y9P7 68 aa7.66□□□□□ -1.18
PTPRF-202ENST00000372405 Q8N9P0 234 aaPredicted RBP7.66□□□□□ -1.18
PTPRF-202ENST00000372405 SERP1Q9Y6X1 66 aa7.66□□□□□ -1.18
PTPRF-202ENST00000372405 TRAV22A0A0B4J277 110 aa7.65□□□□□ -1.18
PTPRF-202ENST00000372405 DMBT1Q9UGM3 2413 aaPredicted RBP7.65□□□□□ -1.19
PTPRF-202ENST00000372405 BIRC6Q9NR09 4857 aa7.64□□□□□ -1.19
PTPRF-202ENST00000372405 MP68P56378 58 aa7.64□□□□□ -1.19
PTPRF-202ENST00000372405 ATP5EP56381 51 aaPredicted RBP7.64□□□□□ -1.19
PTPRF-202ENST00000372405 Q5W150 140 aa7.63□□□□□ -1.19
PTPRF-202ENST00000372405 LINC00208Q96KT6 92 aa7.63□□□□□ -1.19
PTPRF-202ENST00000372405 KRTAP13-3Q3SY46 172 aa7.62□□□□□ -1.19
PTPRF-202ENST00000372405 ABCA13Q86UQ4 5058 aa7.6□□□□□ -1.19
PTPRF-202ENST00000372405 H3BPC8 53 aa7.59□□□□□ -1.19
PTPRF-202ENST00000372405 C1orf64Q8NEQ6 169 aa7.59□□□□□ -1.19
PTPRF-202ENST00000372405 HERC2O95714 4834 aa7.58□□□□□ -1.2
PTPRF-202ENST00000372405 C9orf92A6NGG3 77 aa7.57□□□□□ -1.2
PTPRF-202ENST00000372405 SMIM26A0A096LP01 95 aa7.51□□□□□ -1.21
PTPRF-202ENST00000372405 C4orf26Q17RF5 130 aa7.51□□□□□ -1.21
PTPRF-202ENST00000372405 C20orf166-AS1Q96NR2 134 aa7.5□□□□□ -1.21
PTPRF-202ENST00000372405 FP248Q71RG6 208 aaPredicted RBP7.5□□□□□ -1.21
PTPRF-202ENST00000372405 A8MUU9 505 aa7.49□□□□□ -1.21
PTPRF-202ENST00000372405 LOC101927531A0A1B0GV80 90 aa7.47□□□□□ -1.21
PTPRF-202ENST00000372405 PCOTHQ58A44 107 aa7.47□□□□□ -1.21
PTPRF-202ENST00000372405 CYP4F30PQ9H0H9 118 aa7.46□□□□□ -1.21
PTPRF-202ENST00000372405 IGLV7-46A0A075B6I9 117 aa7.45□□□□□ -1.22
PTPRF-202ENST00000372405 PRR4Q16378 134 aa7.44□□□□□ -1.22
PTPRF-202ENST00000372405 IGKV2-30P06310 120 aa7.44□□□□□ -1.22
PTPRF-202ENST00000372405 SPANXA2-OT1Q8N9U9 137 aa7.42□□□□□ -1.22
PTPRF-202ENST00000372405 Q75L30 129 aa7.4□□□□□ -1.22
PTPRF-202ENST00000372405 IGKV2D-30A0A075B6S6 120 aa7.39□□□□□ -1.23
PTPRF-202ENST00000372405 XP32Q5T750 250 aa7.38□□□□□ -1.23
PTPRF-202ENST00000372405 HRES1P13985 223 aa7.35□□□□□ -1.23
PTPRF-202ENST00000372405 LPAP08519 4548 aa7.33□□□□□ -1.24
PTPRF-202ENST00000372405 RPL37P61927 97 aaKnown RBP7.33□□□□□ -1.24
PTPRF-202ENST00000372405 PCLOQ9Y6V0 5065 aa7.32□□□□□ -1.24
PTPRF-202ENST00000372405 J3QL48 77 aa7.32□□□□□ -1.24
PTPRF-202ENST00000372405 C7orf65Q6ZTY9 151 aa7.31□□□□□ -1.24
PTPRF-202ENST00000372405 MPLKIPQ8TAP9 179 aa7.31□□□□□ -1.24
PTPRF-202ENST00000372405 TPRXLQ17RH7 258 aa7.31□□□□□ -1.24
PTPRF-202ENST00000372405 LRP2P98164 4655 aa7.3□□□□□ -1.24
PTPRF-202ENST00000372405 Q1T7F1 81 aa7.28□□□□□ -1.24
PTPRF-202ENST00000372405 ATP11AUNQ6ZP68 121 aa7.27□□□□□ -1.25
PTPRF-202ENST00000372405 SPINK7P58062 85 aa7.26□□□□□ -1.25
PTPRF-202ENST00000372405 DMAC1Q96GE9 116 aa7.24□□□□□ -1.25
PTPRF-202ENST00000372405 COA5Q86WW8 74 aa7.23□□□□□ -1.25
PTPRF-202ENST00000372405 PRO0628Q9UI54 55 aa7.22□□□□□ -1.25
PTPRF-202ENST00000372405 V9GYY9 64 aa7.17□□□□□ -1.26
PTPRF-202ENST00000372405 HERC1Q15751 4861 aa7.17□□□□□ -1.26
PTPRF-202ENST00000372405 ACYP2P14621 99 aa7.17□□□□□ -1.26
PTPRF-202ENST00000372405 KRTAP3-1Q9BYR8 98 aa7.15□□□□□ -1.26
PTPRF-202ENST00000372405 BRK1Q8WUW1 75 aa7.15□□□□□ -1.27
PTPRF-202ENST00000372405 PSPHP1O15172 72 aa7.12□□□□□ -1.27
PTPRF-202ENST00000372405 A8MUN3 132 aa7.09□□□□□ -1.27
PTPRF-202ENST00000372405 Q5VV11 94 aa7.08□□□□□ -1.28
PTPRF-202ENST00000372405 HMCN2Q8NDA2 5059 aa7.08□□□□□ -1.28
PTPRF-202ENST00000372405 COX6B2Q6YFQ2 88 aa7.08□□□□□ -1.28
PTPRF-202ENST00000372405 CHKB-CPT1BH3BT56 60 aa7.04□□□□□ -1.28
PTPRF-202ENST00000372405 MUC17Q685J3 4493 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms