RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 FP248Q71RG6 208 aaPredicted RBP7.12□□□□□ -1.27
COL9A1-202ENST00000357250 ZFHX3Q15911 3703 aa7.11□□□□□ -1.27
COL9A1-202ENST00000357250 NBPF19A0A087WUL8 3843 aa7.1□□□□□ -1.27
COL9A1-202ENST00000357250 LINC00483Q53H64 154 aa7.1□□□□□ -1.27
COL9A1-202ENST00000357250 CSAG1Q6PB30 78 aa7.1□□□□□ -1.27
COL9A1-202ENST00000357250 OTOGQ6ZRI0 2925 aa7.09□□□□□ -1.27
COL9A1-202ENST00000357250 SPENQ96T58 3664 aaKnown RBP7.09□□□□□ -1.27
COL9A1-202ENST00000357250 TENM3Q9P273 2699 aa7.08□□□□□ -1.28
COL9A1-202ENST00000357250 LUZP6Q538Z0 58 aa7.08□□□□□ -1.28
COL9A1-202ENST00000357250 PKD1L1Q8TDX9 2849 aa7.07□□□□□ -1.28
COL9A1-202ENST00000357250 CYSTM1Q9H1C7 97 aa7.07□□□□□ -1.28
COL9A1-202ENST00000357250 KRTAP4-16G5E9R7 235 aaPredicted RBP7.07□□□□□ -1.28
COL9A1-202ENST00000357250 Q5VV11 94 aa7.06□□□□□ -1.28
COL9A1-202ENST00000357250 FLG2Q5D862 2391 aaPredicted RBP7.06□□□□□ -1.28
COL9A1-202ENST00000357250 VWFP04275 2813 aa7.06□□□□□ -1.28
COL9A1-202ENST00000357250 DMBT1Q9UGM3 2413 aaPredicted RBP7.05□□□□□ -1.28
COL9A1-202ENST00000357250 CAMK2N1Q7Z7J9 78 aa7.04□□□□□ -1.28
COL9A1-202ENST00000357250 SPINK7P58062 85 aa7.03□□□□□ -1.28
COL9A1-202ENST00000357250 S4R3F8 94 aa7.03□□□□□ -1.28
COL9A1-202ENST00000357250 Q6ZR54 194 aa7.03□□□□□ -1.28
COL9A1-202ENST00000357250 PDZD2O15018 2839 aa7.02□□□□□ -1.29
COL9A1-202ENST00000357250 KRTAP29-1A8MX34 341 aaPredicted RBP7□□□□□ -1.29
COL9A1-202ENST00000357250 PANO1I0J062 215 aa6.99□□□□□ -1.29
COL9A1-202ENST00000357250 SEC61BP60468 96 aaKnown RBP6.98□□□□□ -1.29
COL9A1-202ENST00000357250 ASB16-AS1Q495Z4 193 aa6.96□□□□□ -1.3
COL9A1-202ENST00000357250 LCE6AA0A183 80 aa6.95□□□□□ -1.3
COL9A1-202ENST00000357250 KRTAP10-1P60331 282 aa6.94□□□□□ -1.3
COL9A1-202ENST00000357250 KRTAP10-2P60368 255 aa6.93□□□□□ -1.3
COL9A1-202ENST00000357250 RPL37P61927 97 aaKnown RBP6.92□□□□□ -1.3
COL9A1-202ENST00000357250 OXTP01178 125 aa6.91□□□□□ -1.3
COL9A1-202ENST00000357250 R4GN34 69 aa6.91□□□□□ -1.3
COL9A1-202ENST00000357250 RPS29P62273 56 aaKnown RBP6.9□□□□□ -1.31
COL9A1-202ENST00000357250 Q5VSD8 79 aa6.88□□□□□ -1.31
COL9A1-202ENST00000357250 M0R2T5 61 aa6.87□□□□□ -1.31
COL9A1-202ENST00000357250 H1FX-AS1Q4G0G2 97 aa6.87□□□□□ -1.31
COL9A1-202ENST00000357250 KRTAP11-1Q8IUC1 163 aa6.85□□□□□ -1.31
COL9A1-202ENST00000357250 PRAC1Q96KF2 57 aa6.85□□□□□ -1.31
COL9A1-202ENST00000357250 TENM2Q9NT68 2774 aa6.85□□□□□ -1.31
COL9A1-202ENST00000357250 BSNQ9UPA5 3926 aa6.85□□□□□ -1.31
COL9A1-202ENST00000357250 ROMO1P60602 79 aa6.85□□□□□ -1.31
COL9A1-202ENST00000357250 TGP01266 2768 aa6.83□□□□□ -1.32
COL9A1-202ENST00000357250 KRTAP7-1Q8IUC3 87 aa6.81□□□□□ -1.32
COL9A1-202ENST00000357250 Q6ZRN7 208 aaPredicted RBP6.8□□□□□ -1.32
COL9A1-202ENST00000357250 A0A087X002 238 aa6.79□□□□□ -1.32
COL9A1-202ENST00000357250 SPATA8Q6RVD6 105 aa6.78□□□□□ -1.32
COL9A1-202ENST00000357250 A0A0A0MQY5 61 aa6.76□□□□□ -1.33
COL9A1-202ENST00000357250 KRTAP13-1Q8IUC0 172 aa6.75□□□□□ -1.33
COL9A1-202ENST00000357250 M0QZ58 72 aa6.74□□□□□ -1.33
COL9A1-202ENST00000357250 NOTCH2NLQ7Z3S9 236 aa6.71□□□□□ -1.33
COL9A1-202ENST00000357250 SRRM2Q9UQ35 2752 aaKnown RBP6.7□□□□□ -1.34
COL9A1-202ENST00000357250 TRRAPQ9Y4A5 3859 aa6.69□□□□□ -1.34
COL9A1-202ENST00000357250 ADM2Q7Z4H4 148 aa6.68□□□□□ -1.34
COL9A1-202ENST00000357250 H3BS24 57 aa6.66□□□□□ -1.34
COL9A1-202ENST00000357250 KRTAP13-2Q52LG2 175 aa6.63□□□□□ -1.35
COL9A1-202ENST00000357250 A6NN06 94 aa6.62□□□□□ -1.35
COL9A1-202ENST00000357250 PLAC4Q8WY50 150 aa6.61□□□□□ -1.35
COL9A1-202ENST00000357250 VPS13CQ709C8 3753 aa6.61□□□□□ -1.35
COL9A1-202ENST00000357250 KRTAP21-3Q3LHN1 58 aa6.59□□□□□ -1.35
COL9A1-202ENST00000357250 KRTAP25-1Q3LHN0 102 aa6.54□□□□□ -1.36
COL9A1-202ENST00000357250 A8MUU9 505 aa6.53□□□□□ -1.36
COL9A1-202ENST00000357250 C20orf166-AS1Q96NR2 134 aa6.51□□□□□ -1.37
COL9A1-202ENST00000357250 ANK3Q12955 4377 aaKnown RBP6.5□□□□□ -1.37
COL9A1-202ENST00000357250 FBN3Q75N90 2809 aa6.47□□□□□ -1.37
COL9A1-202ENST00000357250 A8MU10 97 aa6.46□□□□□ -1.38
COL9A1-202ENST00000357250 ZNF469Q96JG9 3925 aaPredicted RBP6.45□□□□□ -1.38
COL9A1-202ENST00000357250 COL7A1Q02388 2944 aa6.37□□□□□ -1.39
COL9A1-202ENST00000357250 KRTAP16-1A8MUX0 517 aa6.35□□□□□ -1.39
COL9A1-202ENST00000357250 KRTAP1-4P0C5Y4 121 aa6.35□□□□□ -1.39
COL9A1-202ENST00000357250 TNP1P09430 55 aa6.34□□□□□ -1.4
COL9A1-202ENST00000357250 PP632Q6XCG6 107 aa6.3□□□□□ -1.4
COL9A1-202ENST00000357250 MEGF8Q7Z7M0 2845 aa6.3□□□□□ -1.4
COL9A1-202ENST00000357250 XP32Q5T750 250 aa6.26□□□□□ -1.41
COL9A1-202ENST00000357250 TPRXLQ17RH7 258 aa6.21□□□□□ -1.41
COL9A1-202ENST00000357250 CSMD3Q7Z407 3707 aa6.21□□□□□ -1.41
COL9A1-202ENST00000357250 NDUFAF8A1L188 74 aa6.2□□□□□ -1.42
COL9A1-202ENST00000357250 H0YAA0 97 aa6.14□□□□□ -1.43
COL9A1-202ENST00000357250 KRTAP13-3Q3SY46 172 aa6.08□□□□□ -1.44
COL9A1-202ENST00000357250 C10orf95Q9H7T3 257 aa6.08□□□□□ -1.44
COL9A1-202ENST00000357250 AKAP9Q99996 3911 aa6.07□□□□□ -1.44
COL9A1-202ENST00000357250 P0C880 135 aa6.05□□□□□ -1.44
COL9A1-202ENST00000357250 KRTAP10-8P60410 259 aa6.02□□□□□ -1.45
COL9A1-202ENST00000357250 A0A1B0GVY2 172 aa6.01□□□□□ -1.45
COL9A1-202ENST00000357250 HUWE1Q7Z6Z7 4374 aaKnown RBP5.98□□□□□ -1.45
COL9A1-202ENST00000357250 PRO2289Q9P1D8 64 aa5.95□□□□□ -1.46
COL9A1-202ENST00000357250 DNHD1Q96M86 4753 aa5.9□□□□□ -1.46
COL9A1-202ENST00000357250 KRTAP10-10P60014 251 aa5.9□□□□□ -1.47
COL9A1-202ENST00000357250 DNAH9Q9NYC9 4486 aa5.78□□□□□ -1.48
COL9A1-202ENST00000357250 KRTAP13-4Q3LI77 160 aa5.75□□□□□ -1.49
COL9A1-202ENST00000357250 PLECQ15149 4684 aaKnown RBP5.73□□□□□ -1.49
COL9A1-202ENST00000357250 KRTAP12-2P59991 146 aa5.72□□□□□ -1.49
COL9A1-202ENST00000357250 KRTAP12-1P59990 96 aa5.7□□□□□ -1.5
COL9A1-202ENST00000357250 KRTAP3-1Q9BYR8 98 aa5.68□□□□□ -1.5
COL9A1-202ENST00000357250 DNAH10Q8IVF4 4471 aa5.68□□□□□ -1.5
COL9A1-202ENST00000357250 DNAH11Q96DT5 4516 aa5.65□□□□□ -1.5
COL9A1-202ENST00000357250 KRTAP4-5Q9BYR2 181 aa5.63□□□□□ -1.51
COL9A1-202ENST00000357250 DNAH5Q8TE73 4624 aa5.62□□□□□ -1.51
COL9A1-202ENST00000357250 DNAH1Q9P2D7 4330 aa5.59□□□□□ -1.51
COL9A1-202ENST00000357250 PRKDCP78527 4128 aaKnown RBP5.59□□□□□ -1.51
COL9A1-202ENST00000357250 MT1HL1P0DM35 61 aa5.59□□□□□ -1.51
COL9A1-202ENST00000357250 STARD9Q9P2P6 4700 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms