RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 MUC17Q685J3 4493 aa4.91□□□□□ -1.62
CD44-205ENST00000352818 TRAV7A0A075B6U4 112 aa4.89□□□□□ -1.63
CD44-205ENST00000352818 IGLV7-43P04211 117 aa4.89□□□□□ -1.63
CD44-205ENST00000352818 C9orf153Q5TBE3 101 aa4.89□□□□□ -1.63
CD44-205ENST00000352818 A0A087WSZ3 146 aa4.88□□□□□ -1.63
CD44-205ENST00000352818 DSCR10P59022 87 aa4.87□□□□□ -1.63
CD44-205ENST00000352818 A0A0G2JQZ4 141 aa4.86□□□□□ -1.63
CD44-205ENST00000352818 Q8N9L7 120 aa4.86□□□□□ -1.63
CD44-205ENST00000352818 SS18L2Q9UHA2 77 aa4.86□□□□□ -1.63
CD44-205ENST00000352818 J3KT08 172 aa4.85□□□□□ -1.63
CD44-205ENST00000352818 LINC00472Q9H8W2 130 aa4.85□□□□□ -1.63
CD44-205ENST00000352818 IGLV9-49A0A0B4J1Y8 123 aa4.84□□□□□ -1.63
CD44-205ENST00000352818 K7EQZ3 153 aa4.84□□□□□ -1.63
CD44-205ENST00000352818 MOBPQ13875 183 aa4.83□□□□□ -1.64
CD44-205ENST00000352818 OCR1Q9BZK8 76 aa4.83□□□□□ -1.64
CD44-205ENST00000352818 A8MWP4 228 aa4.82□□□□□ -1.64
CD44-205ENST00000352818 HCG22E2RYF7 251 aa4.82□□□□□ -1.64
CD44-205ENST00000352818 CD164Q04900 197 aa4.82□□□□□ -1.64
CD44-205ENST00000352818 KLKP1Q107X0 134 aa4.82□□□□□ -1.64
CD44-205ENST00000352818 TMEM258P61165 79 aa4.81□□□□□ -1.64
CD44-205ENST00000352818 FAM229BQ4G0N7 80 aa4.81□□□□□ -1.64
CD44-205ENST00000352818 C5orf47Q569G3 176 aa4.81□□□□□ -1.64
CD44-205ENST00000352818 SSBP3-AS1Q7Z2R9 100 aa4.81□□□□□ -1.64
CD44-205ENST00000352818 PRR15Q8IV56 129 aa4.81□□□□□ -1.64
CD44-205ENST00000352818 LORP23490 312 aaPredicted RBP4.8□□□□□ -1.64
CD44-205ENST00000352818 Q96NJ1 140 aa4.8□□□□□ -1.64
CD44-205ENST00000352818 C20orf197Q8N268 126 aa4.79□□□□□ -1.64
CD44-205ENST00000352818 NDUFC1O43677 76 aa4.78□□□□□ -1.64
CD44-205ENST00000352818 ASB16-AS1Q495Z4 193 aa4.78□□□□□ -1.64
CD44-205ENST00000352818 CYSTM1Q9H1C7 97 aa4.78□□□□□ -1.64
CD44-205ENST00000352818 ANAPC11Q9NYG5 84 aa4.78□□□□□ -1.64
CD44-205ENST00000352818 NDUFB1O75438 58 aa4.77□□□□□ -1.65
CD44-205ENST00000352818 DEFB116Q30KQ4 102 aa4.77□□□□□ -1.65
CD44-205ENST00000352818 TMEM254Q8TBM7 123 aa4.77□□□□□ -1.65
CD44-205ENST00000352818 MMP24-AS1A0A0U1RRL7 71 aa4.76□□□□□ -1.65
CD44-205ENST00000352818 Q5XG85 94 aa4.76□□□□□ -1.65
CD44-205ENST00000352818 H7BZZ5 65 aa4.75□□□□□ -1.65
CD44-205ENST00000352818 KRTAP1-4P0C5Y4 121 aa4.75□□□□□ -1.65
CD44-205ENST00000352818 CASC2Q6XLA1 102 aa4.75□□□□□ -1.65
CD44-205ENST00000352818 KRTAP13-2Q52LG2 175 aa4.74□□□□□ -1.65
CD44-205ENST00000352818 HRCT1Q6UXD1 115 aa4.74□□□□□ -1.65
CD44-205ENST00000352818 SSPOA2VEC9 5147 aa4.73□□□□□ -1.65
CD44-205ENST00000352818 A0A087X002 238 aa4.73□□□□□ -1.65
CD44-205ENST00000352818 A0A1B0GVX0 72 aa4.73□□□□□ -1.65
CD44-205ENST00000352818 ATP5EP56381 51 aaPredicted RBP4.73□□□□□ -1.65
CD44-205ENST00000352818 RPS28P62857 69 aaKnown RBP4.73□□□□□ -1.65
CD44-205ENST00000352818 SPINK6Q6UWN8 80 aa4.73□□□□□ -1.65
CD44-205ENST00000352818 WFDC13Q8IUB5 93 aa4.73□□□□□ -1.65
CD44-205ENST00000352818 SNURFQ9Y675 71 aa4.73□□□□□ -1.65
CD44-205ENST00000352818 H3BPC8 53 aa4.72□□□□□ -1.65
CD44-205ENST00000352818 C8orf17Q9NRJ1 99 aa4.72□□□□□ -1.65
CD44-205ENST00000352818 FAM236DA0A1B0GTK5 79 aa4.71□□□□□ -1.66
CD44-205ENST00000352818 hDV103S1A0JD37 113 aa4.71□□□□□ -1.66
CD44-205ENST00000352818 FAM236CP0DP71 79 aa4.71□□□□□ -1.66
CD44-205ENST00000352818 ZCCHC13Q8WW36 166 aaKnown RBP4.71□□□□□ -1.66
CD44-205ENST00000352818 FCGBPQ9Y6R7 5405 aaPredicted RBP4.71□□□□□ -1.66
CD44-205ENST00000352818 LIMD2Q9BT23 127 aa4.7□□□□□ -1.66
CD44-205ENST00000352818 USH2AO75445 5202 aa4.69□□□□□ -1.66
CD44-205ENST00000352818 C8orf87E5RJ46 101 aa4.69□□□□□ -1.66
CD44-205ENST00000352818 PRR4Q16378 134 aa4.69□□□□□ -1.66
CD44-205ENST00000352818 TP53AIP1Q9HCN2 124 aa4.69□□□□□ -1.66
CD44-205ENST00000352818 SYNE2Q8WXH0 6885 aaKnown RBP4.68□□□□□ -1.66
CD44-205ENST00000352818 MP68P56378 58 aa4.68□□□□□ -1.66
CD44-205ENST00000352818 RPS29P62273 56 aaKnown RBP4.68□□□□□ -1.66
CD44-205ENST00000352818 IGHV6-1A0A0B4J1U7 121 aa4.67□□□□□ -1.66
CD44-205ENST00000352818 TRAV22A0A0B4J277 110 aa4.66□□□□□ -1.66
CD44-205ENST00000352818 C1orf195Q5TG92 126 aa4.66□□□□□ -1.66
CD44-205ENST00000352818 TYMSOSQ8TAI1 123 aa4.66□□□□□ -1.66
CD44-205ENST00000352818 MRPL34Q9BQ48 92 aaKnown RBP4.66□□□□□ -1.66
CD44-205ENST00000352818 H0Y9P7 68 aa4.65□□□□□ -1.67
CD44-205ENST00000352818 SPINK1P00995 79 aa4.65□□□□□ -1.67
CD44-205ENST00000352818 SPAG11AQ6PDA7 123 aa4.65□□□□□ -1.67
CD44-205ENST00000352818 SERP1Q9Y6X1 66 aa4.65□□□□□ -1.67
CD44-205ENST00000352818 MACF1Q9UPN3 7388 aaKnown RBP4.64□□□□□ -1.67
CD44-205ENST00000352818 NOTCH2NLQ7Z3S9 236 aa4.62□□□□□ -1.67
CD44-205ENST00000352818 LINC00304Q8N9R0 145 aa4.62□□□□□ -1.67
CD44-205ENST00000352818 LINC00208Q96KT6 92 aa4.62□□□□□ -1.67
CD44-205ENST00000352818 PRR26Q8N8Z3 221 aa4.61□□□□□ -1.67
CD44-205ENST00000352818 SPANXA2-OT1Q8N9U9 137 aa4.61□□□□□ -1.67
CD44-205ENST00000352818 KRTAP4-1Q9BYQ7 146 aa4.61□□□□□ -1.67
CD44-205ENST00000352818 CYP4F30PQ9H0H9 118 aa4.61□□□□□ -1.67
CD44-205ENST00000352818 LINC00313P59037 77 aa4.6□□□□□ -1.67
CD44-205ENST00000352818 C1orf64Q8NEQ6 169 aa4.6□□□□□ -1.67
CD44-205ENST00000352818 Q8N9P0 234 aaPredicted RBP4.59□□□□□ -1.67
CD44-205ENST00000352818 NDUFS5O43920 106 aa4.58□□□□□ -1.68
CD44-205ENST00000352818 KRTAP13-3Q3SY46 172 aa4.58□□□□□ -1.68
CD44-205ENST00000352818 KRTAP16-1A8MUX0 517 aa4.57□□□□□ -1.68
CD44-205ENST00000352818 LOC101927531A0A1B0GV80 90 aa4.56□□□□□ -1.68
CD44-205ENST00000352818 KRTAP10-6P60371 365 aaPredicted RBP4.55□□□□□ -1.68
CD44-205ENST00000352818 MT1HP80294 61 aa4.55□□□□□ -1.68
CD44-205ENST00000352818 KRTAP19-2Q3LHN2 52 aa4.55□□□□□ -1.68
CD44-205ENST00000352818 PRO0628Q9UI54 55 aa4.54□□□□□ -1.68
CD44-205ENST00000352818 IGLV7-46A0A075B6I9 117 aa4.53□□□□□ -1.68
CD44-205ENST00000352818 SMIM26A0A096LP01 95 aa4.53□□□□□ -1.68
CD44-205ENST00000352818 Q5W150 140 aa4.53□□□□□ -1.68
CD44-205ENST00000352818 NEBP20929 6669 aa4.51□□□□□ -1.69
CD44-205ENST00000352818 IGKV2-30P06310 120 aa4.48□□□□□ -1.69
CD44-205ENST00000352818 C4orf26Q17RF5 130 aa4.48□□□□□ -1.69
CD44-205ENST00000352818 PCOTHQ58A44 107 aa4.48□□□□□ -1.69
CD44-205ENST00000352818 FP248Q71RG6 208 aaPredicted RBP4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms